data_8QVH # _model_server_result.job_id vUd2YE2StTrgYWmKf8ekrg _model_server_result.datetime_utc '2024-10-27 20:23:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8QVH # _exptl.entry_id 8QVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.522 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[(trans-4-{[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylcarbamoyl]amino}cyclohexyl)oxy]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QVH _cell.length_a 95.41 _cell.length_b 95.41 _cell.length_c 244.29 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 47.705 82.627484 285.005 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 N2 O4' _chem_comp.formula_weight 412.522 _chem_comp.id AUB _chem_comp.mon_nstd_flag . _chem_comp.name '4-[(trans-4-{[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylcarbamoyl]amino}cyclohexyl)oxy]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 AUB sing 70 n n C6 C5 AUB sing 71 n n C1 C9 AUB sing 72 n n C1 C2 AUB sing 73 n n C9 C3 AUB sing 74 n n C5 C4 AUB sing 75 n n C5 C10 AUB sing 76 n n C4 C3 AUB sing 77 n n C2 C7 AUB sing 78 n n C3 C8 AUB sing 79 n n C10 C7 AUB sing 80 n n C7 C8 AUB sing 81 n n C7 N11 AUB sing 82 n n N11 C26 AUB sing 83 n n O27 C26 AUB doub 84 n n C26 N18 AUB sing 85 n n N18 C13 AUB sing 86 n n C13 C14 AUB sing 87 n n C13 C12 AUB sing 88 n n C14 C15 AUB sing 89 n n C12 C17 AUB sing 90 n n C15 C16 AUB sing 91 n n C17 C16 AUB sing 92 n n C16 O19 AUB sing 93 n n O19 C20 AUB sing 94 n n C20 C21 AUB doub 95 n y C20 C25 AUB sing 96 n y C21 C22 AUB sing 97 n y C25 C24 AUB doub 98 n y C22 C23 AUB doub 99 n y C24 C23 AUB sing 100 n y C23 C28 AUB sing 101 n n C28 O29 AUB doub 102 n n C28 O30 AUB sing 103 n n C22 H1 AUB sing 104 n n C24 H2 AUB sing 105 n n C21 H3 AUB sing 106 n n C25 H4 AUB sing 107 n n C14 H5 AUB sing 108 n n C14 H6 AUB sing 109 n n C12 H7 AUB sing 110 n n C12 H8 AUB sing 111 n n C15 H9 AUB sing 112 n n C15 H10 AUB sing 113 n n C17 H11 AUB sing 114 n n C17 H12 AUB sing 115 n n C6 H13 AUB sing 116 n n C6 H14 AUB sing 117 n n C9 H15 AUB sing 118 n n C9 H16 AUB sing 119 n n C4 H17 AUB sing 120 n n C4 H18 AUB sing 121 n n C2 H19 AUB sing 122 n n C2 H20 AUB sing 123 n n C10 H21 AUB sing 124 n n C10 H22 AUB sing 125 n n C8 H23 AUB sing 126 n n C8 H24 AUB sing 127 n n C1 H25 AUB sing 128 n n C5 H26 AUB sing 129 n n C3 H27 AUB sing 130 n n C13 H28 AUB sing 131 n n C16 H29 AUB sing 132 n n N18 H30 AUB sing 133 n n N11 H31 AUB sing 134 n n O30 H32 AUB sing 135 n n # _atom_sites.entry_id 8QVH _atom_sites.fract_transf_matrix[1][1] 0.010481 _atom_sites.fract_transf_matrix[1][2] 0.006051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AUB A 1 601 601 AUB UNL . C 3 HOH A 1 701 133 HOH HOH . C 3 HOH A 2 702 107 HOH HOH . C 3 HOH A 3 703 95 HOH HOH . C 3 HOH A 4 704 60 HOH HOH . C 3 HOH A 5 705 70 HOH HOH . C 3 HOH A 6 706 14 HOH HOH . C 3 HOH A 7 707 159 HOH HOH . C 3 HOH A 8 708 24 HOH HOH . C 3 HOH A 9 709 144 HOH HOH . C 3 HOH A 10 710 32 HOH HOH . C 3 HOH A 11 711 64 HOH HOH . C 3 HOH A 12 712 94 HOH HOH . C 3 HOH A 13 713 132 HOH HOH . C 3 HOH A 14 714 77 HOH HOH . C 3 HOH A 15 715 12 HOH HOH . C 3 HOH A 16 716 11 HOH HOH . C 3 HOH A 17 717 111 HOH HOH . C 3 HOH A 18 718 112 HOH HOH . C 3 HOH A 19 719 156 HOH HOH . C 3 HOH A 20 720 91 HOH HOH . C 3 HOH A 21 721 113 HOH HOH . C 3 HOH A 22 722 176 HOH HOH . C 3 HOH A 23 723 73 HOH HOH . C 3 HOH A 24 724 3 HOH HOH . C 3 HOH A 25 725 39 HOH HOH . C 3 HOH A 26 726 123 HOH HOH . C 3 HOH A 27 727 79 HOH HOH . C 3 HOH A 28 728 8 HOH HOH . C 3 HOH A 29 729 57 HOH HOH . C 3 HOH A 30 730 59 HOH HOH . C 3 HOH A 31 731 56 HOH HOH . C 3 HOH A 32 732 7 HOH HOH . C 3 HOH A 33 733 34 HOH HOH . C 3 HOH A 34 734 118 HOH HOH . C 3 HOH A 35 735 103 HOH HOH . C 3 HOH A 36 736 92 HOH HOH . C 3 HOH A 37 737 26 HOH HOH . C 3 HOH A 38 738 16 HOH HOH . C 3 HOH A 39 739 17 HOH HOH . C 3 HOH A 40 740 168 HOH HOH . C 3 HOH A 41 741 6 HOH HOH . C 3 HOH A 42 742 83 HOH HOH . C 3 HOH A 43 743 158 HOH HOH . C 3 HOH A 44 744 157 HOH HOH . C 3 HOH A 45 745 108 HOH HOH . C 3 HOH A 46 746 2 HOH HOH . C 3 HOH A 47 747 9 HOH HOH . C 3 HOH A 48 748 5 HOH HOH . C 3 HOH A 49 749 30 HOH HOH . C 3 HOH A 50 750 88 HOH HOH . C 3 HOH A 51 751 33 HOH HOH . C 3 HOH A 52 752 25 HOH HOH . C 3 HOH A 53 753 18 HOH HOH . C 3 HOH A 54 754 21 HOH HOH . C 3 HOH A 55 755 65 HOH HOH . C 3 HOH A 56 756 74 HOH HOH . C 3 HOH A 57 757 114 HOH HOH . C 3 HOH A 58 758 109 HOH HOH . C 3 HOH A 59 759 81 HOH HOH . C 3 HOH A 60 760 51 HOH HOH . C 3 HOH A 61 761 90 HOH HOH . C 3 HOH A 62 762 15 HOH HOH . C 3 HOH A 63 763 66 HOH HOH . C 3 HOH A 64 764 19 HOH HOH . C 3 HOH A 65 765 50 HOH HOH . C 3 HOH A 66 766 172 HOH HOH . C 3 HOH A 67 767 130 HOH HOH . C 3 HOH A 68 768 76 HOH HOH . C 3 HOH A 69 769 169 HOH HOH . C 3 HOH A 70 770 42 HOH HOH . C 3 HOH A 71 771 97 HOH HOH . C 3 HOH A 72 772 46 HOH HOH . C 3 HOH A 73 773 48 HOH HOH . C 3 HOH A 74 774 131 HOH HOH . C 3 HOH A 75 775 153 HOH HOH . C 3 HOH A 76 776 1 HOH HOH . C 3 HOH A 77 777 100 HOH HOH . C 3 HOH A 78 778 20 HOH HOH . C 3 HOH A 79 779 106 HOH HOH . C 3 HOH A 80 780 134 HOH HOH . C 3 HOH A 81 781 67 HOH HOH . C 3 HOH A 82 782 142 HOH HOH . C 3 HOH A 83 783 177 HOH HOH . C 3 HOH A 84 784 23 HOH HOH . C 3 HOH A 85 785 29 HOH HOH . C 3 HOH A 86 786 58 HOH HOH . C 3 HOH A 87 787 93 HOH HOH . C 3 HOH A 88 788 54 HOH HOH . C 3 HOH A 89 789 53 HOH HOH . C 3 HOH A 90 790 161 HOH HOH . C 3 HOH A 91 791 102 HOH HOH . C 3 HOH A 92 792 105 HOH HOH . C 3 HOH A 93 793 49 HOH HOH . C 3 HOH A 94 794 78 HOH HOH . C 3 HOH A 95 795 61 HOH HOH . C 3 HOH A 96 796 127 HOH HOH . C 3 HOH A 97 797 171 HOH HOH . C 3 HOH A 98 798 36 HOH HOH . C 3 HOH A 99 799 35 HOH HOH . C 3 HOH A 100 800 86 HOH HOH . C 3 HOH A 101 801 136 HOH HOH . C 3 HOH A 102 802 45 HOH HOH . C 3 HOH A 103 803 122 HOH HOH . C 3 HOH A 104 804 10 HOH HOH . C 3 HOH A 105 805 149 HOH HOH . C 3 HOH A 106 806 27 HOH HOH . C 3 HOH A 107 807 89 HOH HOH . C 3 HOH A 108 808 4 HOH HOH . C 3 HOH A 109 809 41 HOH HOH . C 3 HOH A 110 810 148 HOH HOH . C 3 HOH A 111 811 38 HOH HOH . C 3 HOH A 112 812 120 HOH HOH . C 3 HOH A 113 813 28 HOH HOH . C 3 HOH A 114 814 101 HOH HOH . C 3 HOH A 115 815 164 HOH HOH . C 3 HOH A 116 816 125 HOH HOH . C 3 HOH A 117 817 151 HOH HOH . C 3 HOH A 118 818 84 HOH HOH . C 3 HOH A 119 819 87 HOH HOH . C 3 HOH A 120 820 145 HOH HOH . C 3 HOH A 121 821 63 HOH HOH . C 3 HOH A 122 822 44 HOH HOH . C 3 HOH A 123 823 104 HOH HOH . C 3 HOH A 124 824 150 HOH HOH . C 3 HOH A 125 825 52 HOH HOH . C 3 HOH A 126 826 162 HOH HOH . C 3 HOH A 127 827 167 HOH HOH . C 3 HOH A 128 828 166 HOH HOH . C 3 HOH A 129 829 40 HOH HOH . C 3 HOH A 130 830 137 HOH HOH . C 3 HOH A 131 831 72 HOH HOH . C 3 HOH A 132 832 55 HOH HOH . C 3 HOH A 133 833 75 HOH HOH . C 3 HOH A 134 834 155 HOH HOH . C 3 HOH A 135 835 163 HOH HOH . C 3 HOH A 136 836 173 HOH HOH . C 3 HOH A 137 837 85 HOH HOH . C 3 HOH A 138 838 13 HOH HOH . C 3 HOH A 139 839 98 HOH HOH . C 3 HOH A 140 840 80 HOH HOH . C 3 HOH A 141 841 43 HOH HOH . C 3 HOH A 142 842 121 HOH HOH . C 3 HOH A 143 843 128 HOH HOH . C 3 HOH A 144 844 165 HOH HOH . C 3 HOH A 145 845 129 HOH HOH . C 3 HOH A 146 846 174 HOH HOH . C 3 HOH A 147 847 99 HOH HOH . C 3 HOH A 148 848 47 HOH HOH . C 3 HOH A 149 849 37 HOH HOH . C 3 HOH A 150 850 170 HOH HOH . C 3 HOH A 151 851 141 HOH HOH . C 3 HOH A 152 852 71 HOH HOH . C 3 HOH A 153 853 62 HOH HOH . C 3 HOH A 154 854 115 HOH HOH . C 3 HOH A 155 855 152 HOH HOH . C 3 HOH A 156 856 140 HOH HOH . C 3 HOH A 157 857 82 HOH HOH . C 3 HOH A 158 858 126 HOH HOH . C 3 HOH A 159 859 154 HOH HOH . C 3 HOH A 160 860 138 HOH HOH . C 3 HOH A 161 861 117 HOH HOH . C 3 HOH A 162 862 178 HOH HOH . C 3 HOH A 163 863 69 HOH HOH . C 3 HOH A 164 864 31 HOH HOH . C 3 HOH A 165 865 124 HOH HOH . C 3 HOH A 166 866 68 HOH HOH . C 3 HOH A 167 867 96 HOH HOH . C 3 HOH A 168 868 147 HOH HOH . C 3 HOH A 169 869 110 HOH HOH . C 3 HOH A 170 870 22 HOH HOH . C 3 HOH A 171 871 160 HOH HOH . C 3 HOH A 172 872 181 HOH HOH . C 3 HOH A 173 873 175 HOH HOH . C 3 HOH A 174 874 119 HOH HOH . C 3 HOH A 175 875 180 HOH HOH . C 3 HOH A 176 876 179 HOH HOH . C 3 HOH A 177 877 143 HOH HOH . C 3 HOH A 178 878 135 HOH HOH . C 3 HOH A 179 879 183 HOH HOH . C 3 HOH A 180 880 116 HOH HOH . C 3 HOH A 181 881 146 HOH HOH . C 3 HOH A 182 882 182 HOH HOH . C 3 HOH A 183 883 139 HOH HOH . C 3 HOH A 184 884 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 AUB . . . B 2 17.048 10.649 129.971 1 46.33 ? C22 AUB 601 A 1 HETATM 2 C C24 AUB . . . B 2 18.562 8.758 129.675 1 46.45 ? C24 AUB 601 A 1 HETATM 3 C C21 AUB . . . B 2 17.527 10.815 131.27 1 46 ? C21 AUB 601 A 1 HETATM 4 C C25 AUB . . . B 2 19.036 8.932 130.974 1 46.12 ? C25 AUB 601 A 1 HETATM 5 C C23 AUB . . . B 2 17.58 9.623 129.194 1 46.92 ? C23 AUB 601 A 1 HETATM 6 C C20 AUB . . . B 2 18.516 9.953 131.77 1 45.64 ? C20 AUB 601 A 1 HETATM 7 C C28 AUB . . . B 2 17.087 9.464 127.824 1 47.91 ? C28 AUB 601 A 1 HETATM 8 C C26 AUB . . . B 2 16.487 11.581 138.94 1 41.76 ? C26 AUB 601 A 1 HETATM 9 C C14 AUB . . . B 2 18.69 11.993 136.174 1 42.96 ? C14 AUB 601 A 1 HETATM 10 C C12 AUB . . . B 2 16.52 10.733 135.692 1 42.86 ? C12 AUB 601 A 1 HETATM 11 C C15 AUB . . . B 2 19.356 11.306 134.975 1 43.15 ? C15 AUB 601 A 1 HETATM 12 C C17 AUB . . . B 2 17.226 9.959 134.575 1 43.25 ? C17 AUB 601 A 1 HETATM 13 C C6 AUB . . . B 2 13.628 10.866 142.835 1 42.14 ? C6 AUB 601 A 1 HETATM 14 C C9 AUB . . . B 2 14.325 13.224 143.565 1 41.86 ? C9 AUB 601 A 1 HETATM 15 C C4 AUB . . . B 2 12.358 12.905 141.996 1 42.24 ? C4 AUB 601 A 1 HETATM 16 C C2 AUB . . . B 2 15.802 11.873 142.023 1 41.83 ? C2 AUB 601 A 1 HETATM 17 C C10 AUB . . . B 2 13.817 11.562 140.425 1 42.25 ? C10 AUB 601 A 1 HETATM 18 C C8 AUB . . . B 2 14.529 13.901 141.151 1 42.11 ? C8 AUB 601 A 1 HETATM 19 C C1 AUB . . . B 2 14.83 11.781 143.237 1 42.07 ? C1 AUB 601 A 1 HETATM 20 C C5 AUB . . . B 2 12.837 11.462 141.634 1 42.26 ? C5 AUB 601 A 1 HETATM 21 C C3 AUB . . . B 2 13.555 13.84 142.364 1 42.04 ? C3 AUB 601 A 1 HETATM 22 C C13 AUB . . . B 2 17.511 11.205 136.773 1 42.66 ? C13 AUB 601 A 1 HETATM 23 C C16 AUB . . . B 2 18.343 10.808 133.941 1 43.72 ? C16 AUB 601 A 1 HETATM 24 C C7 AUB . . . B 2 15.05 12.469 140.793 1 41.96 ? C7 AUB 601 A 1 HETATM 25 N N18 AUB . . . B 2 16.818 12.034 137.702 1 42.12 ? N18 AUB 601 A 1 HETATM 26 N N11 AUB . . . B 2 15.968 12.604 139.695 1 41.77 ? N11 AUB 601 A 1 HETATM 27 O O29 AUB . . . B 2 16.232 10.19 127.331 1 48.18 ? O29 AUB 601 A 1 HETATM 28 O O27 AUB . . . B 2 16.694 10.432 139.297 1 41.71 ? O27 AUB 601 A 1 HETATM 29 O O30 AUB . . . B 2 17.745 8.416 127.251 1 48.11 ? O30 AUB 601 A 1 HETATM 30 O O19 AUB . . . B 2 19.081 10.013 133.034 1 44.68 ? O19 AUB 601 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #