data_8QVK # _model_server_result.job_id OThB_vfcALxpqiGF8fL9bw _model_server_result.datetime_utc '2024-10-27 22:21:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8QVK # _exptl.entry_id 8QVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.393 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5,5-dioxodibenzothiophen-2-yl)-4,4-difluoro-piperidine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QVK _cell.length_a 95.43 _cell.length_b 95.43 _cell.length_c 246.89 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -47.715 82.644804 -41.148333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H16 F2 N2 O3 S' _chem_comp.formula_weight 378.393 _chem_comp.id 6N0 _chem_comp.mon_nstd_flag . _chem_comp.name N-(5,5-dioxodibenzothiophen-2-yl)-4,4-difluoro-piperidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6N0 sing 1 n y C1 C6 6N0 doub 2 n y C2 C3 6N0 doub 3 n y C6 C5 6N0 sing 4 n y C10 C11 6N0 sing 5 n y C10 C9 6N0 doub 6 n y C3 C4 6N0 sing 7 n y C11 C12 6N0 doub 8 n y C8 C7 6N0 doub 9 n y C8 C9 6N0 sing 10 n y C5 C7 6N0 sing 11 n n C5 C4 6N0 doub 12 n y C7 C12 6N0 sing 13 n y C9 N16 6N0 sing 14 n n C4 S13 6N0 sing 15 n n C12 S13 6N0 sing 16 n n C17 N19 6N0 sing 17 n n C17 N16 6N0 sing 18 n n C17 O18 6N0 doub 19 n n C21 C20 6N0 sing 20 n n C21 C22 6N0 sing 21 n n C23 C24 6N0 sing 22 n n C23 C22 6N0 sing 23 n n C20 N19 6N0 sing 24 n n C24 N19 6N0 sing 25 n n C22 F25 6N0 sing 26 n n C22 F26 6N0 sing 27 n n O14 S13 6N0 doub 28 n n O15 S13 6N0 doub 29 n n C1 H1 6N0 sing 30 n n C2 H2 6N0 sing 31 n n C6 H6 6N0 sing 32 n n C3 H3 6N0 sing 33 n n C10 H10 6N0 sing 34 n n C11 H11 6N0 sing 35 n n C8 H8 6N0 sing 36 n n N16 H16 6N0 sing 37 n n C21 H211 6N0 sing 38 n n C21 H212 6N0 sing 39 n n C20 H201 6N0 sing 40 n n C20 H202 6N0 sing 41 n n C23 H231 6N0 sing 42 n n C23 H232 6N0 sing 43 n n C24 H241 6N0 sing 44 n n C24 H242 6N0 sing 45 n n # _atom_sites.entry_id 8QVK _atom_sites.fract_transf_matrix[1][1] 0.010479 _atom_sites.fract_transf_matrix[1][2] 0.00605 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6N0 A 1 601 601 6N0 UNL . C 3 HOH A 1 701 135 HOH HOH . C 3 HOH A 2 702 109 HOH HOH . C 3 HOH A 3 703 114 HOH HOH . C 3 HOH A 4 704 129 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 3 HOH HOH . C 3 HOH A 7 707 151 HOH HOH . C 3 HOH A 8 708 10 HOH HOH . C 3 HOH A 9 709 32 HOH HOH . C 3 HOH A 10 710 157 HOH HOH . C 3 HOH A 11 711 111 HOH HOH . C 3 HOH A 12 712 100 HOH HOH . C 3 HOH A 13 713 137 HOH HOH . C 3 HOH A 14 714 28 HOH HOH . C 3 HOH A 15 715 96 HOH HOH . C 3 HOH A 16 716 50 HOH HOH . C 3 HOH A 17 717 73 HOH HOH . C 3 HOH A 18 718 63 HOH HOH . C 3 HOH A 19 719 7 HOH HOH . C 3 HOH A 20 720 11 HOH HOH . C 3 HOH A 21 721 115 HOH HOH . C 3 HOH A 22 722 1 HOH HOH . C 3 HOH A 23 723 122 HOH HOH . C 3 HOH A 24 724 45 HOH HOH . C 3 HOH A 25 725 9 HOH HOH . C 3 HOH A 26 726 107 HOH HOH . C 3 HOH A 27 727 4 HOH HOH . C 3 HOH A 28 728 23 HOH HOH . C 3 HOH A 29 729 75 HOH HOH . C 3 HOH A 30 730 136 HOH HOH . C 3 HOH A 31 731 65 HOH HOH . C 3 HOH A 32 732 59 HOH HOH . C 3 HOH A 33 733 102 HOH HOH . C 3 HOH A 34 734 123 HOH HOH . C 3 HOH A 35 735 92 HOH HOH . C 3 HOH A 36 736 130 HOH HOH . C 3 HOH A 37 737 15 HOH HOH . C 3 HOH A 38 738 77 HOH HOH . C 3 HOH A 39 739 104 HOH HOH . C 3 HOH A 40 740 138 HOH HOH . C 3 HOH A 41 741 61 HOH HOH . C 3 HOH A 42 742 81 HOH HOH . C 3 HOH A 43 743 124 HOH HOH . C 3 HOH A 44 744 144 HOH HOH . C 3 HOH A 45 745 57 HOH HOH . C 3 HOH A 46 746 74 HOH HOH . C 3 HOH A 47 747 2 HOH HOH . C 3 HOH A 48 748 27 HOH HOH . C 3 HOH A 49 749 47 HOH HOH . C 3 HOH A 50 750 140 HOH HOH . C 3 HOH A 51 751 108 HOH HOH . C 3 HOH A 52 752 68 HOH HOH . C 3 HOH A 53 753 34 HOH HOH . C 3 HOH A 54 754 31 HOH HOH . C 3 HOH A 55 755 14 HOH HOH . C 3 HOH A 56 756 97 HOH HOH . C 3 HOH A 57 757 72 HOH HOH . C 3 HOH A 58 758 155 HOH HOH . C 3 HOH A 59 759 30 HOH HOH . C 3 HOH A 60 760 156 HOH HOH . C 3 HOH A 61 761 24 HOH HOH . C 3 HOH A 62 762 13 HOH HOH . C 3 HOH A 63 763 82 HOH HOH . C 3 HOH A 64 764 52 HOH HOH . C 3 HOH A 65 765 79 HOH HOH . C 3 HOH A 66 766 53 HOH HOH . C 3 HOH A 67 767 62 HOH HOH . C 3 HOH A 68 768 12 HOH HOH . C 3 HOH A 69 769 56 HOH HOH . C 3 HOH A 70 770 8 HOH HOH . C 3 HOH A 71 771 117 HOH HOH . C 3 HOH A 72 772 60 HOH HOH . C 3 HOH A 73 773 110 HOH HOH . C 3 HOH A 74 774 48 HOH HOH . C 3 HOH A 75 775 42 HOH HOH . C 3 HOH A 76 776 64 HOH HOH . C 3 HOH A 77 777 78 HOH HOH . C 3 HOH A 78 778 44 HOH HOH . C 3 HOH A 79 779 85 HOH HOH . C 3 HOH A 80 780 20 HOH HOH . C 3 HOH A 81 781 158 HOH HOH . C 3 HOH A 82 782 95 HOH HOH . C 3 HOH A 83 783 147 HOH HOH . C 3 HOH A 84 784 67 HOH HOH . C 3 HOH A 85 785 89 HOH HOH . C 3 HOH A 86 786 84 HOH HOH . C 3 HOH A 87 787 37 HOH HOH . C 3 HOH A 88 788 58 HOH HOH . C 3 HOH A 89 789 134 HOH HOH . C 3 HOH A 90 790 116 HOH HOH . C 3 HOH A 91 791 43 HOH HOH . C 3 HOH A 92 792 83 HOH HOH . C 3 HOH A 93 793 119 HOH HOH . C 3 HOH A 94 794 154 HOH HOH . C 3 HOH A 95 795 112 HOH HOH . C 3 HOH A 96 796 70 HOH HOH . C 3 HOH A 97 797 36 HOH HOH . C 3 HOH A 98 798 41 HOH HOH . C 3 HOH A 99 799 94 HOH HOH . C 3 HOH A 100 800 19 HOH HOH . C 3 HOH A 101 801 103 HOH HOH . C 3 HOH A 102 802 26 HOH HOH . C 3 HOH A 103 803 88 HOH HOH . C 3 HOH A 104 804 101 HOH HOH . C 3 HOH A 105 805 98 HOH HOH . C 3 HOH A 106 806 16 HOH HOH . C 3 HOH A 107 807 22 HOH HOH . C 3 HOH A 108 808 35 HOH HOH . C 3 HOH A 109 809 99 HOH HOH . C 3 HOH A 110 810 39 HOH HOH . C 3 HOH A 111 811 145 HOH HOH . C 3 HOH A 112 812 126 HOH HOH . C 3 HOH A 113 813 54 HOH HOH . C 3 HOH A 114 814 132 HOH HOH . C 3 HOH A 115 815 150 HOH HOH . C 3 HOH A 116 816 152 HOH HOH . C 3 HOH A 117 817 71 HOH HOH . C 3 HOH A 118 818 33 HOH HOH . C 3 HOH A 119 819 55 HOH HOH . C 3 HOH A 120 820 29 HOH HOH . C 3 HOH A 121 821 118 HOH HOH . C 3 HOH A 122 822 76 HOH HOH . C 3 HOH A 123 823 93 HOH HOH . C 3 HOH A 124 824 51 HOH HOH . C 3 HOH A 125 825 80 HOH HOH . C 3 HOH A 126 826 87 HOH HOH . C 3 HOH A 127 827 6 HOH HOH . C 3 HOH A 128 828 38 HOH HOH . C 3 HOH A 129 829 121 HOH HOH . C 3 HOH A 130 830 86 HOH HOH . C 3 HOH A 131 831 25 HOH HOH . C 3 HOH A 132 832 139 HOH HOH . C 3 HOH A 133 833 120 HOH HOH . C 3 HOH A 134 834 66 HOH HOH . C 3 HOH A 135 835 17 HOH HOH . C 3 HOH A 136 836 18 HOH HOH . C 3 HOH A 137 837 40 HOH HOH . C 3 HOH A 138 838 69 HOH HOH . C 3 HOH A 139 839 146 HOH HOH . C 3 HOH A 140 840 49 HOH HOH . C 3 HOH A 141 841 46 HOH HOH . C 3 HOH A 142 842 133 HOH HOH . C 3 HOH A 143 843 105 HOH HOH . C 3 HOH A 144 844 128 HOH HOH . C 3 HOH A 145 845 153 HOH HOH . C 3 HOH A 146 846 21 HOH HOH . C 3 HOH A 147 847 106 HOH HOH . C 3 HOH A 148 848 148 HOH HOH . C 3 HOH A 149 849 90 HOH HOH . C 3 HOH A 150 850 91 HOH HOH . C 3 HOH A 151 851 113 HOH HOH . C 3 HOH A 152 852 142 HOH HOH . C 3 HOH A 153 853 125 HOH HOH . C 3 HOH A 154 854 131 HOH HOH . C 3 HOH A 155 855 141 HOH HOH . C 3 HOH A 156 856 143 HOH HOH . C 3 HOH A 157 857 149 HOH HOH . C 3 HOH A 158 858 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6N0 . . . B 2 -18.482 6.205 -12.39 1 71.81 ? C1 6N0 601 A 1 HETATM 2 C C2 6N0 . . . B 2 -19.539 6.224 -11.464 1 71.8 ? C2 6N0 601 A 1 HETATM 3 C C6 6N0 . . . B 2 -18.089 7.369 -13.067 1 71.68 ? C6 6N0 601 A 1 HETATM 4 C C10 6N0 . . . B 2 -18.363 12.534 -14.241 1 69.57 ? C10 6N0 601 A 1 HETATM 5 C C3 6N0 . . . B 2 -20.232 7.408 -11.217 1 71.76 ? C3 6N0 601 A 1 HETATM 6 C C11 6N0 . . . B 2 -19.328 12.177 -13.307 1 69.76 ? C11 6N0 601 A 1 HETATM 7 C C8 6N0 . . . B 2 -17.52 10.24 -14.334 1 70.08 ? C8 6N0 601 A 1 HETATM 8 C C5 6N0 . . . B 2 -18.761 8.561 -12.839 1 71.31 ? C5 6N0 601 A 1 HETATM 9 C C7 6N0 . . . B 2 -18.497 9.872 -13.422 1 70.56 ? C7 6N0 601 A 1 HETATM 10 C C9 6N0 . . . B 2 -17.467 11.578 -14.751 1 69.57 ? C9 6N0 601 A 1 HETATM 11 C C4 6N0 . . . B 2 -19.817 8.527 -11.913 1 71.38 ? C4 6N0 601 A 1 HETATM 12 C C12 6N0 . . . B 2 -19.369 10.856 -12.934 1 70.29 ? C12 6N0 601 A 1 HETATM 13 C C17 6N0 . . . B 2 -16.38 11.448 -16.904 1 68.44 ? C17 6N0 601 A 1 HETATM 14 C C21 6N0 . . . B 2 -15.059 12.406 -20.16 1 67.94 ? C21 6N0 601 A 1 HETATM 15 C C23 6N0 . . . B 2 -14.357 14.157 -18.363 1 67.92 ? C23 6N0 601 A 1 HETATM 16 C C20 6N0 . . . B 2 -15.191 11.366 -19.048 1 67.97 ? C20 6N0 601 A 1 HETATM 17 C C24 6N0 . . . B 2 -14.454 13.042 -17.318 1 68.13 ? C24 6N0 601 A 1 HETATM 18 C C22 6N0 . . . B 2 -14.163 13.581 -19.764 1 68.03 ? C22 6N0 601 A 1 HETATM 19 N N19 6N0 . . . B 2 -15.423 11.994 -17.732 1 68.18 ? N19 6N0 601 A 1 HETATM 20 N N16 6N0 . . . B 2 -16.494 11.998 -15.658 1 68.92 ? N16 6N0 601 A 1 HETATM 21 O O18 6N0 . . . B 2 -17.068 10.51 -17.261 1 68.42 ? O18 6N0 601 A 1 HETATM 22 O O14 6N0 . . . B 2 -21.817 10.096 -12.372 1 70.67 ? O14 6N0 601 A 1 HETATM 23 O O15 6N0 . . . B 2 -20.141 10.651 -10.476 1 70.87 ? O15 6N0 601 A 1 HETATM 24 F F25 6N0 . . . B 2 -14.365 14.574 -20.671 1 67.89 ? F25 6N0 601 A 1 HETATM 25 F F26 6N0 . . . B 2 -12.866 13.177 -19.874 1 68.28 ? F26 6N0 601 A 1 HETATM 26 S S13 6N0 . . . B 2 -20.487 10.132 -11.79 1 70.77 ? S13 6N0 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #