data_8QVL # _model_server_result.job_id 1-YK-SlVOcadk4YosHA53g _model_server_result.datetime_utc '2024-11-25 04:44:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8QVL # _exptl.entry_id 8QVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 231.09 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(5-BROMO-2-PYRIDYL)-METHYL-AMINO]ETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QVL _cell.length_a 94.39 _cell.length_b 94.39 _cell.length_c 247.45 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 47.195 -81.744138 -41.241667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C8 H11 Br N2 O' _chem_comp.formula_weight 231.09 _chem_comp.id 4VY _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(5-BROMO-2-PYRIDYL)-METHYL-AMINO]ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 4VY sing 1 n n N2 C3 4VY sing 2 n n N2 C6 4VY sing 3 n n C3 C4 4VY sing 4 n n C4 O5 4VY sing 5 n n C6 C7 4VY sing 6 n y C6 N11 4VY doub 7 n y C7 C8 4VY doub 8 n y C8 C9 4VY sing 9 n y C9 C10 4VY doub 10 n y C9 BR 4VY sing 11 n n C10 N11 4VY sing 12 n y C1 H11C 4VY sing 13 n n C1 H12C 4VY sing 14 n n C1 H13C 4VY sing 15 n n C3 H31C 4VY sing 16 n n C3 H32C 4VY sing 17 n n C4 H41C 4VY sing 18 n n C4 H42C 4VY sing 19 n n O5 H5 4VY sing 20 n n C7 H7 4VY sing 21 n n C8 H8 4VY sing 22 n n C10 H10 4VY sing 23 n n # _atom_sites.entry_id 8QVL _atom_sites.fract_transf_matrix[1][1] 0.010594 _atom_sites.fract_transf_matrix[1][2] 0.006117 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4VY A 1 601 601 4VY UNL . C 2 4VY A 1 602 602 4VY UNL . D 3 DMS A 1 603 603 DMS DMS . E 4 PGE A 1 604 604 PGE PGE . F 5 HOH A 1 701 15 HOH HOH . F 5 HOH A 2 702 88 HOH HOH . F 5 HOH A 3 703 87 HOH HOH . F 5 HOH A 4 704 13 HOH HOH . F 5 HOH A 5 705 68 HOH HOH . F 5 HOH A 6 706 133 HOH HOH . F 5 HOH A 7 707 38 HOH HOH . F 5 HOH A 8 708 103 HOH HOH . F 5 HOH A 9 709 49 HOH HOH . F 5 HOH A 10 710 28 HOH HOH . F 5 HOH A 11 711 3 HOH HOH . F 5 HOH A 12 712 35 HOH HOH . F 5 HOH A 13 713 14 HOH HOH . F 5 HOH A 14 714 19 HOH HOH . F 5 HOH A 15 715 12 HOH HOH . F 5 HOH A 16 716 125 HOH HOH . F 5 HOH A 17 717 18 HOH HOH . F 5 HOH A 18 718 9 HOH HOH . F 5 HOH A 19 719 70 HOH HOH . F 5 HOH A 20 720 93 HOH HOH . F 5 HOH A 21 721 85 HOH HOH . F 5 HOH A 22 722 156 HOH HOH . F 5 HOH A 23 723 37 HOH HOH . F 5 HOH A 24 724 143 HOH HOH . F 5 HOH A 25 725 20 HOH HOH . F 5 HOH A 26 726 140 HOH HOH . F 5 HOH A 27 727 79 HOH HOH . F 5 HOH A 28 728 159 HOH HOH . F 5 HOH A 29 729 127 HOH HOH . F 5 HOH A 30 730 139 HOH HOH . F 5 HOH A 31 731 117 HOH HOH . F 5 HOH A 32 732 66 HOH HOH . F 5 HOH A 33 733 71 HOH HOH . F 5 HOH A 34 734 97 HOH HOH . F 5 HOH A 35 735 77 HOH HOH . F 5 HOH A 36 736 24 HOH HOH . F 5 HOH A 37 737 40 HOH HOH . F 5 HOH A 38 738 74 HOH HOH . F 5 HOH A 39 739 36 HOH HOH . F 5 HOH A 40 740 48 HOH HOH . F 5 HOH A 41 741 4 HOH HOH . F 5 HOH A 42 742 78 HOH HOH . F 5 HOH A 43 743 10 HOH HOH . F 5 HOH A 44 744 46 HOH HOH . F 5 HOH A 45 745 29 HOH HOH . F 5 HOH A 46 746 2 HOH HOH . F 5 HOH A 47 747 43 HOH HOH . F 5 HOH A 48 748 33 HOH HOH . F 5 HOH A 49 749 96 HOH HOH . F 5 HOH A 50 750 52 HOH HOH . F 5 HOH A 51 751 8 HOH HOH . F 5 HOH A 52 752 108 HOH HOH . F 5 HOH A 53 753 16 HOH HOH . F 5 HOH A 54 754 132 HOH HOH . F 5 HOH A 55 755 60 HOH HOH . F 5 HOH A 56 756 130 HOH HOH . F 5 HOH A 57 757 56 HOH HOH . F 5 HOH A 58 758 6 HOH HOH . F 5 HOH A 59 759 1 HOH HOH . F 5 HOH A 60 760 89 HOH HOH . F 5 HOH A 61 761 30 HOH HOH . F 5 HOH A 62 762 69 HOH HOH . F 5 HOH A 63 763 111 HOH HOH . F 5 HOH A 64 764 22 HOH HOH . F 5 HOH A 65 765 135 HOH HOH . F 5 HOH A 66 766 137 HOH HOH . F 5 HOH A 67 767 128 HOH HOH . F 5 HOH A 68 768 100 HOH HOH . F 5 HOH A 69 769 31 HOH HOH . F 5 HOH A 70 770 116 HOH HOH . F 5 HOH A 71 771 149 HOH HOH . F 5 HOH A 72 772 81 HOH HOH . F 5 HOH A 73 773 138 HOH HOH . F 5 HOH A 74 774 83 HOH HOH . F 5 HOH A 75 775 84 HOH HOH . F 5 HOH A 76 776 44 HOH HOH . F 5 HOH A 77 777 131 HOH HOH . F 5 HOH A 78 778 124 HOH HOH . F 5 HOH A 79 779 142 HOH HOH . F 5 HOH A 80 780 21 HOH HOH . F 5 HOH A 81 781 27 HOH HOH . F 5 HOH A 82 782 26 HOH HOH . F 5 HOH A 83 783 113 HOH HOH . F 5 HOH A 84 784 105 HOH HOH . F 5 HOH A 85 785 41 HOH HOH . F 5 HOH A 86 786 7 HOH HOH . F 5 HOH A 87 787 50 HOH HOH . F 5 HOH A 88 788 145 HOH HOH . F 5 HOH A 89 789 67 HOH HOH . F 5 HOH A 90 790 119 HOH HOH . F 5 HOH A 91 791 104 HOH HOH . F 5 HOH A 92 792 154 HOH HOH . F 5 HOH A 93 793 5 HOH HOH . F 5 HOH A 94 794 92 HOH HOH . F 5 HOH A 95 795 53 HOH HOH . F 5 HOH A 96 796 17 HOH HOH . F 5 HOH A 97 797 99 HOH HOH . F 5 HOH A 98 798 61 HOH HOH . F 5 HOH A 99 799 54 HOH HOH . F 5 HOH A 100 800 94 HOH HOH . F 5 HOH A 101 801 109 HOH HOH . F 5 HOH A 102 802 11 HOH HOH . F 5 HOH A 103 803 90 HOH HOH . F 5 HOH A 104 804 121 HOH HOH . F 5 HOH A 105 805 82 HOH HOH . F 5 HOH A 106 806 23 HOH HOH . F 5 HOH A 107 807 57 HOH HOH . F 5 HOH A 108 808 120 HOH HOH . F 5 HOH A 109 809 75 HOH HOH . F 5 HOH A 110 810 107 HOH HOH . F 5 HOH A 111 811 80 HOH HOH . F 5 HOH A 112 812 134 HOH HOH . F 5 HOH A 113 813 42 HOH HOH . F 5 HOH A 114 814 147 HOH HOH . F 5 HOH A 115 815 101 HOH HOH . F 5 HOH A 116 816 25 HOH HOH . F 5 HOH A 117 817 45 HOH HOH . F 5 HOH A 118 818 122 HOH HOH . F 5 HOH A 119 819 51 HOH HOH . F 5 HOH A 120 820 114 HOH HOH . F 5 HOH A 121 821 151 HOH HOH . F 5 HOH A 122 822 63 HOH HOH . F 5 HOH A 123 823 123 HOH HOH . F 5 HOH A 124 824 95 HOH HOH . F 5 HOH A 125 825 91 HOH HOH . F 5 HOH A 126 826 59 HOH HOH . F 5 HOH A 127 827 102 HOH HOH . F 5 HOH A 128 828 64 HOH HOH . F 5 HOH A 129 829 110 HOH HOH . F 5 HOH A 130 830 106 HOH HOH . F 5 HOH A 131 831 47 HOH HOH . F 5 HOH A 132 832 155 HOH HOH . F 5 HOH A 133 833 62 HOH HOH . F 5 HOH A 134 834 98 HOH HOH . F 5 HOH A 135 835 34 HOH HOH . F 5 HOH A 136 836 86 HOH HOH . F 5 HOH A 137 837 118 HOH HOH . F 5 HOH A 138 838 126 HOH HOH . F 5 HOH A 139 839 157 HOH HOH . F 5 HOH A 140 840 32 HOH HOH . F 5 HOH A 141 841 58 HOH HOH . F 5 HOH A 142 842 115 HOH HOH . F 5 HOH A 143 843 141 HOH HOH . F 5 HOH A 144 844 73 HOH HOH . F 5 HOH A 145 845 55 HOH HOH . F 5 HOH A 146 846 146 HOH HOH . F 5 HOH A 147 847 76 HOH HOH . F 5 HOH A 148 848 112 HOH HOH . F 5 HOH A 149 849 72 HOH HOH . F 5 HOH A 150 850 153 HOH HOH . F 5 HOH A 151 851 152 HOH HOH . F 5 HOH A 152 852 150 HOH HOH . F 5 HOH A 153 853 39 HOH HOH . F 5 HOH A 154 854 148 HOH HOH . F 5 HOH A 155 855 158 HOH HOH . F 5 HOH A 156 856 144 HOH HOH . F 5 HOH A 157 857 129 HOH HOH . F 5 HOH A 158 858 65 HOH HOH . F 5 HOH A 159 859 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4VY . A . C 2 19.316 -10.807 -14.183 0.5 80.42 ? C1 4VY 602 A 1 HETATM 2 N N2 4VY . A . C 2 19.795 -10.202 -12.954 0.5 80.39 ? N2 4VY 602 A 1 HETATM 3 C C3 4VY . A . C 2 21.146 -9.676 -12.883 0.5 80.03 ? C3 4VY 602 A 1 HETATM 4 C C4 4VY . A . C 2 21.161 -8.188 -13.129 0.5 79.77 ? C4 4VY 602 A 1 HETATM 5 O O5 4VY . A . C 2 22.405 -7.693 -12.657 0.5 79.56 ? O5 4VY 602 A 1 HETATM 6 C C6 4VY . A . C 2 18.974 -10.197 -11.79 0.5 80.9 ? C6 4VY 602 A 1 HETATM 7 C C7 4VY . A . C 2 17.691 -10.738 -11.841 0.5 81.13 ? C7 4VY 602 A 1 HETATM 8 C C8 4VY . A . C 2 16.881 -10.745 -10.711 0.5 81.38 ? C8 4VY 602 A 1 HETATM 9 C C9 4VY . A . C 2 17.372 -10.199 -9.537 0.5 81.78 ? C9 4VY 602 A 1 HETATM 10 C C10 4VY . A . C 2 18.644 -9.665 -9.54 0.5 81.42 ? C10 4VY 602 A 1 HETATM 11 N N11 4VY . A . C 2 19.435 -9.657 -10.633 0.5 81.13 ? N11 4VY 602 A 1 HETATM 12 BR BR 4VY . A . C 2 16.341 -10.172 -7.958 0.5 82.66 ? BR 4VY 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #