data_8QVU # _model_server_result.job_id MPHQDEUaiyY_2OqDnhdkMA _model_server_result.datetime_utc '2025-01-25 08:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 8QVU # _exptl.entry_id 8QVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.673 _cell.angle_gamma 90 _cell.entry_id 8QVU _cell.length_a 72.253 _cell.length_b 120.9 _cell.length_c 81.016 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,K,L,M,P,Q,R,V 1 1 D,E,F,H,I,J,N,O,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G OG SER 17 E SER 17 1_555 M MG MG . E MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc2 G OD1 ASP 57 E ASP 57 1_555 M MG MG . E MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc3 G OD2 ASP 57 E ASP 57 1_555 M MG MG . E MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc4 L O2B GDP . E GDP 202 1_555 M MG MG . E MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc5 H OG SER 17 A SER 17 1_555 O MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc6 N O1B GDP . A GDP 201 1_555 O MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 305 n n P O2 PO4 sing 306 n n P O3 PO4 sing 307 n n P O4 PO4 sing 308 n n # _atom_sites.entry_id 8QVU _atom_sites.fract_transf_matrix[1][1] 0.01384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 PO4 B 1 301 300 PO4 PO4 . J 6 WYL B 1 302 200 WYL LIG . K 6 WYL E 1 201 200 WYL LIG . L 7 GDP E 1 202 201 GDP GDP . M 8 MG E 1 203 301 MG MG . N 7 GDP A 1 201 201 GDP GDP . O 8 MG A 1 202 202 MG MG . P 9 HOH H 1 201 52 HOH HOH . Q 9 HOH G 1 201 54 HOH HOH . Q 9 HOH G 2 202 65 HOH HOH . Q 9 HOH G 3 203 32 HOH HOH . Q 9 HOH G 4 204 55 HOH HOH . Q 9 HOH G 5 205 30 HOH HOH . Q 9 HOH G 6 206 53 HOH HOH . Q 9 HOH G 7 207 21 HOH HOH . Q 9 HOH G 8 208 48 HOH HOH . R 9 HOH F 1 301 22 HOH HOH . R 9 HOH F 2 302 20 HOH HOH . R 9 HOH F 3 303 57 HOH HOH . R 9 HOH F 4 304 10 HOH HOH . R 9 HOH F 5 305 59 HOH HOH . R 9 HOH F 6 306 24 HOH HOH . R 9 HOH F 7 307 44 HOH HOH . R 9 HOH F 8 308 23 HOH HOH . R 9 HOH F 9 309 29 HOH HOH . R 9 HOH F 10 310 8 HOH HOH . R 9 HOH F 11 311 12 HOH HOH . R 9 HOH F 12 312 40 HOH HOH . R 9 HOH F 13 313 56 HOH HOH . R 9 HOH F 14 314 37 HOH HOH . R 9 HOH F 15 315 11 HOH HOH . R 9 HOH F 16 316 58 HOH HOH . R 9 HOH F 17 317 7 HOH HOH . R 9 HOH F 18 318 9 HOH HOH . R 9 HOH F 19 319 49 HOH HOH . S 9 HOH D 1 201 60 HOH HOH . S 9 HOH D 2 202 35 HOH HOH . S 9 HOH D 3 203 18 HOH HOH . T 9 HOH C 1 201 36 HOH HOH . T 9 HOH C 2 202 13 HOH HOH . T 9 HOH C 3 203 61 HOH HOH . T 9 HOH C 4 204 62 HOH HOH . T 9 HOH C 5 205 28 HOH HOH . T 9 HOH C 6 206 14 HOH HOH . T 9 HOH C 7 207 51 HOH HOH . T 9 HOH C 8 208 15 HOH HOH . U 9 HOH B 1 401 26 HOH HOH . U 9 HOH B 2 402 34 HOH HOH . U 9 HOH B 3 403 31 HOH HOH . U 9 HOH B 4 404 47 HOH HOH . U 9 HOH B 5 405 27 HOH HOH . U 9 HOH B 6 406 66 HOH HOH . U 9 HOH B 7 407 17 HOH HOH . U 9 HOH B 8 408 33 HOH HOH . U 9 HOH B 9 409 64 HOH HOH . U 9 HOH B 10 410 16 HOH HOH . U 9 HOH B 11 411 42 HOH HOH . U 9 HOH B 12 412 46 HOH HOH . U 9 HOH B 13 413 63 HOH HOH . U 9 HOH B 14 414 50 HOH HOH . V 9 HOH E 1 301 6 HOH HOH . V 9 HOH E 2 302 1 HOH HOH . V 9 HOH E 3 303 3 HOH HOH . V 9 HOH E 4 304 4 HOH HOH . V 9 HOH E 5 305 43 HOH HOH . V 9 HOH E 6 306 5 HOH HOH . V 9 HOH E 7 307 25 HOH HOH . V 9 HOH E 8 308 39 HOH HOH . V 9 HOH E 9 309 38 HOH HOH . V 9 HOH E 10 310 45 HOH HOH . W 9 HOH A 1 301 41 HOH HOH . W 9 HOH A 2 302 19 HOH HOH . W 9 HOH A 3 303 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 5 26.948 23.467 -4.624 1 27.47 ? P PO4 301 B 1 HETATM 2 O O1 PO4 . . . I 5 27.719 23.895 -5.862 1 27.47 ? O1 PO4 301 B 1 HETATM 3 O O2 PO4 . . . I 5 25.974 24.565 -4.23 1 27.47 ? O2 PO4 301 B 1 HETATM 4 O O3 PO4 . . . I 5 26.18 22.192 -4.919 1 27.47 ? O3 PO4 301 B 1 HETATM 5 O O4 PO4 . . . I 5 27.915 23.222 -3.48 1 27.47 ? O4 PO4 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 5 #