data_8QWA # _model_server_result.job_id zzLaqyWLfn5aMQNpMyoTWA _model_server_result.datetime_utc '2024-11-08 04:05:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 8QWA # _exptl.entry_id 8QWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.905 _cell.angle_gamma 90 _cell.entry_id 8QWA _cell.length_a 68.897 _cell.length_b 61.124 _cell.length_c 119.254 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -68.897 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 322 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 322 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.28 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8QWA _atom_sites.fract_transf_matrix[1][1] 0.014514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002274 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 501 501 IMP IMP . C 3 PLP A 1 502 502 PLP PLP . D 4 SO4 A 1 503 503 SO4 SO4 . E 5 GOL A 1 504 504 GOL GOL . F 6 HOH A 1 601 271 HOH HOH . F 6 HOH A 2 602 41 HOH HOH . F 6 HOH A 3 603 105 HOH HOH . F 6 HOH A 4 604 117 HOH HOH . F 6 HOH A 5 605 269 HOH HOH . F 6 HOH A 6 606 65 HOH HOH . F 6 HOH A 7 607 104 HOH HOH . F 6 HOH A 8 608 176 HOH HOH . F 6 HOH A 9 609 142 HOH HOH . F 6 HOH A 10 610 158 HOH HOH . F 6 HOH A 11 611 264 HOH HOH . F 6 HOH A 12 612 97 HOH HOH . F 6 HOH A 13 613 85 HOH HOH . F 6 HOH A 14 614 163 HOH HOH . F 6 HOH A 15 615 109 HOH HOH . F 6 HOH A 16 616 128 HOH HOH . F 6 HOH A 17 617 79 HOH HOH . F 6 HOH A 18 618 137 HOH HOH . F 6 HOH A 19 619 161 HOH HOH . F 6 HOH A 20 620 170 HOH HOH . F 6 HOH A 21 621 100 HOH HOH . F 6 HOH A 22 622 87 HOH HOH . F 6 HOH A 23 623 122 HOH HOH . F 6 HOH A 24 624 63 HOH HOH . F 6 HOH A 25 625 60 HOH HOH . F 6 HOH A 26 626 20 HOH HOH . F 6 HOH A 27 627 129 HOH HOH . F 6 HOH A 28 628 113 HOH HOH . F 6 HOH A 29 629 160 HOH HOH . F 6 HOH A 30 630 266 HOH HOH . F 6 HOH A 31 631 39 HOH HOH . F 6 HOH A 32 632 25 HOH HOH . F 6 HOH A 33 633 133 HOH HOH . F 6 HOH A 34 634 124 HOH HOH . F 6 HOH A 35 635 162 HOH HOH . F 6 HOH A 36 636 114 HOH HOH . F 6 HOH A 37 637 216 HOH HOH . F 6 HOH A 38 638 93 HOH HOH . F 6 HOH A 39 639 21 HOH HOH . F 6 HOH A 40 640 260 HOH HOH . F 6 HOH A 41 641 64 HOH HOH . F 6 HOH A 42 642 174 HOH HOH . F 6 HOH A 43 643 80 HOH HOH . F 6 HOH A 44 644 115 HOH HOH . F 6 HOH A 45 645 46 HOH HOH . F 6 HOH A 46 646 108 HOH HOH . F 6 HOH A 47 647 256 HOH HOH . F 6 HOH A 48 648 146 HOH HOH . F 6 HOH A 49 649 22 HOH HOH . F 6 HOH A 50 650 40 HOH HOH . F 6 HOH A 51 651 111 HOH HOH . F 6 HOH A 52 652 175 HOH HOH . F 6 HOH A 53 653 18 HOH HOH . F 6 HOH A 54 654 147 HOH HOH . F 6 HOH A 55 655 67 HOH HOH . F 6 HOH A 56 656 78 HOH HOH . F 6 HOH A 57 657 28 HOH HOH . F 6 HOH A 58 658 234 HOH HOH . F 6 HOH A 59 659 273 HOH HOH . F 6 HOH A 60 660 13 HOH HOH . F 6 HOH A 61 661 10 HOH HOH . F 6 HOH A 62 662 3 HOH HOH . F 6 HOH A 63 663 251 HOH HOH . F 6 HOH A 64 664 236 HOH HOH . F 6 HOH A 65 665 199 HOH HOH . F 6 HOH A 66 666 58 HOH HOH . F 6 HOH A 67 667 86 HOH HOH . F 6 HOH A 68 668 151 HOH HOH . F 6 HOH A 69 669 125 HOH HOH . F 6 HOH A 70 670 213 HOH HOH . F 6 HOH A 71 671 6 HOH HOH . F 6 HOH A 72 672 206 HOH HOH . F 6 HOH A 73 673 157 HOH HOH . F 6 HOH A 74 674 62 HOH HOH . F 6 HOH A 75 675 246 HOH HOH . F 6 HOH A 76 676 38 HOH HOH . F 6 HOH A 77 677 132 HOH HOH . F 6 HOH A 78 678 130 HOH HOH . F 6 HOH A 79 679 37 HOH HOH . F 6 HOH A 80 680 27 HOH HOH . F 6 HOH A 81 681 143 HOH HOH . F 6 HOH A 82 682 127 HOH HOH . F 6 HOH A 83 683 17 HOH HOH . F 6 HOH A 84 684 14 HOH HOH . F 6 HOH A 85 685 186 HOH HOH . F 6 HOH A 86 686 237 HOH HOH . F 6 HOH A 87 687 126 HOH HOH . F 6 HOH A 88 688 72 HOH HOH . F 6 HOH A 89 689 184 HOH HOH . F 6 HOH A 90 690 42 HOH HOH . F 6 HOH A 91 691 30 HOH HOH . F 6 HOH A 92 692 61 HOH HOH . F 6 HOH A 93 693 36 HOH HOH . F 6 HOH A 94 694 245 HOH HOH . F 6 HOH A 95 695 29 HOH HOH . F 6 HOH A 96 696 211 HOH HOH . F 6 HOH A 97 697 73 HOH HOH . F 6 HOH A 98 698 43 HOH HOH . F 6 HOH A 99 699 255 HOH HOH . F 6 HOH A 100 700 239 HOH HOH . F 6 HOH A 101 701 2 HOH HOH . F 6 HOH A 102 702 178 HOH HOH . F 6 HOH A 103 703 241 HOH HOH . F 6 HOH A 104 704 254 HOH HOH . F 6 HOH A 105 705 51 HOH HOH . F 6 HOH A 106 706 69 HOH HOH . F 6 HOH A 107 707 243 HOH HOH . F 6 HOH A 108 708 172 HOH HOH . F 6 HOH A 109 709 242 HOH HOH . F 6 HOH A 110 710 91 HOH HOH . F 6 HOH A 111 711 183 HOH HOH . F 6 HOH A 112 712 101 HOH HOH . F 6 HOH A 113 713 7 HOH HOH . F 6 HOH A 114 714 45 HOH HOH . F 6 HOH A 115 715 19 HOH HOH . F 6 HOH A 116 716 149 HOH HOH . F 6 HOH A 117 717 253 HOH HOH . F 6 HOH A 118 718 208 HOH HOH . F 6 HOH A 119 719 88 HOH HOH . F 6 HOH A 120 720 4 HOH HOH . F 6 HOH A 121 721 70 HOH HOH . F 6 HOH A 122 722 118 HOH HOH . F 6 HOH A 123 723 55 HOH HOH . F 6 HOH A 124 724 94 HOH HOH . F 6 HOH A 125 725 66 HOH HOH . F 6 HOH A 126 726 68 HOH HOH . F 6 HOH A 127 727 150 HOH HOH . F 6 HOH A 128 728 8 HOH HOH . F 6 HOH A 129 729 247 HOH HOH . F 6 HOH A 130 730 192 HOH HOH . F 6 HOH A 131 731 44 HOH HOH . F 6 HOH A 132 732 179 HOH HOH . F 6 HOH A 133 733 53 HOH HOH . F 6 HOH A 134 734 15 HOH HOH . F 6 HOH A 135 735 52 HOH HOH . F 6 HOH A 136 736 196 HOH HOH . F 6 HOH A 137 737 240 HOH HOH . F 6 HOH A 138 738 120 HOH HOH . F 6 HOH A 139 739 106 HOH HOH . F 6 HOH A 140 740 98 HOH HOH . F 6 HOH A 141 741 267 HOH HOH . F 6 HOH A 142 742 244 HOH HOH . F 6 HOH A 143 743 84 HOH HOH . F 6 HOH A 144 744 274 HOH HOH . F 6 HOH A 145 745 11 HOH HOH . F 6 HOH A 146 746 194 HOH HOH . F 6 HOH A 147 747 33 HOH HOH . F 6 HOH A 148 748 248 HOH HOH . F 6 HOH A 149 749 250 HOH HOH . F 6 HOH A 150 750 57 HOH HOH . F 6 HOH A 151 751 154 HOH HOH . F 6 HOH A 152 752 31 HOH HOH . F 6 HOH A 153 753 23 HOH HOH . F 6 HOH A 154 754 144 HOH HOH . F 6 HOH A 155 755 54 HOH HOH . F 6 HOH A 156 756 16 HOH HOH . F 6 HOH A 157 757 131 HOH HOH . F 6 HOH A 158 758 238 HOH HOH . F 6 HOH A 159 759 89 HOH HOH . F 6 HOH A 160 760 24 HOH HOH . F 6 HOH A 161 761 279 HOH HOH . F 6 HOH A 162 762 180 HOH HOH . F 6 HOH A 163 763 265 HOH HOH . F 6 HOH A 164 764 77 HOH HOH . F 6 HOH A 165 765 145 HOH HOH . F 6 HOH A 166 766 5 HOH HOH . F 6 HOH A 167 767 76 HOH HOH . F 6 HOH A 168 768 75 HOH HOH . F 6 HOH A 169 769 12 HOH HOH . F 6 HOH A 170 770 56 HOH HOH . F 6 HOH A 171 771 156 HOH HOH . F 6 HOH A 172 772 152 HOH HOH . F 6 HOH A 173 773 59 HOH HOH . F 6 HOH A 174 774 34 HOH HOH . F 6 HOH A 175 775 278 HOH HOH . F 6 HOH A 176 776 92 HOH HOH . F 6 HOH A 177 777 198 HOH HOH . F 6 HOH A 178 778 218 HOH HOH . F 6 HOH A 179 779 227 HOH HOH . F 6 HOH A 180 780 82 HOH HOH . F 6 HOH A 181 781 171 HOH HOH . F 6 HOH A 182 782 148 HOH HOH . F 6 HOH A 183 783 96 HOH HOH . F 6 HOH A 184 784 81 HOH HOH . F 6 HOH A 185 785 259 HOH HOH . F 6 HOH A 186 786 200 HOH HOH . F 6 HOH A 187 787 102 HOH HOH . F 6 HOH A 188 788 123 HOH HOH . F 6 HOH A 189 789 275 HOH HOH . F 6 HOH A 190 790 204 HOH HOH . F 6 HOH A 191 791 50 HOH HOH . F 6 HOH A 192 792 90 HOH HOH . F 6 HOH A 193 793 185 HOH HOH . F 6 HOH A 194 794 164 HOH HOH . F 6 HOH A 195 795 182 HOH HOH . F 6 HOH A 196 796 212 HOH HOH . F 6 HOH A 197 797 228 HOH HOH . F 6 HOH A 198 798 74 HOH HOH . F 6 HOH A 199 799 203 HOH HOH . F 6 HOH A 200 800 112 HOH HOH . F 6 HOH A 201 801 215 HOH HOH . F 6 HOH A 202 802 47 HOH HOH . F 6 HOH A 203 803 262 HOH HOH . F 6 HOH A 204 804 221 HOH HOH . F 6 HOH A 205 805 268 HOH HOH . F 6 HOH A 206 806 258 HOH HOH . F 6 HOH A 207 807 107 HOH HOH . F 6 HOH A 208 808 191 HOH HOH . F 6 HOH A 209 809 188 HOH HOH . F 6 HOH A 210 810 205 HOH HOH . F 6 HOH A 211 811 49 HOH HOH . F 6 HOH A 212 812 210 HOH HOH . F 6 HOH A 213 813 219 HOH HOH . F 6 HOH A 214 814 169 HOH HOH . F 6 HOH A 215 815 207 HOH HOH . F 6 HOH A 216 816 189 HOH HOH . F 6 HOH A 217 817 138 HOH HOH . F 6 HOH A 218 818 165 HOH HOH . F 6 HOH A 219 819 134 HOH HOH . F 6 HOH A 220 820 230 HOH HOH . F 6 HOH A 221 821 235 HOH HOH . F 6 HOH A 222 822 9 HOH HOH . F 6 HOH A 223 823 220 HOH HOH . F 6 HOH A 224 824 195 HOH HOH . F 6 HOH A 225 825 214 HOH HOH . F 6 HOH A 226 826 249 HOH HOH . F 6 HOH A 227 827 166 HOH HOH . F 6 HOH A 228 828 167 HOH HOH . F 6 HOH A 229 829 261 HOH HOH . F 6 HOH A 230 830 159 HOH HOH . F 6 HOH A 231 831 110 HOH HOH . F 6 HOH A 232 832 168 HOH HOH . F 6 HOH A 233 833 229 HOH HOH . F 6 HOH A 234 834 263 HOH HOH . F 6 HOH A 235 835 116 HOH HOH . F 6 HOH A 236 836 187 HOH HOH . F 6 HOH A 237 837 141 HOH HOH . F 6 HOH A 238 838 181 HOH HOH . F 6 HOH A 239 839 135 HOH HOH . F 6 HOH A 240 840 139 HOH HOH . F 6 HOH A 241 841 270 HOH HOH . F 6 HOH A 242 842 277 HOH HOH . F 6 HOH A 243 843 103 HOH HOH . F 6 HOH A 244 844 99 HOH HOH . F 6 HOH A 245 845 140 HOH HOH . F 6 HOH A 246 846 231 HOH HOH . F 6 HOH A 247 847 233 HOH HOH . F 6 HOH A 248 848 121 HOH HOH . F 6 HOH A 249 849 222 HOH HOH . F 6 HOH A 250 850 225 HOH HOH . F 6 HOH A 251 851 257 HOH HOH . F 6 HOH A 252 852 276 HOH HOH . F 6 HOH A 253 853 48 HOH HOH . F 6 HOH A 254 854 252 HOH HOH . F 6 HOH A 255 855 272 HOH HOH . F 6 HOH A 256 856 232 HOH HOH . F 6 HOH A 257 857 226 HOH HOH . F 6 HOH A 258 858 193 HOH HOH . F 6 HOH A 259 859 177 HOH HOH . F 6 HOH A 260 860 224 HOH HOH . F 6 HOH A 261 861 217 HOH HOH . F 6 HOH A 262 862 201 HOH HOH . F 6 HOH A 263 863 155 HOH HOH . F 6 HOH A 264 864 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -30.224 -52.677 8.191 1 40.42 0 C1 GOL 504 A 1 HETATM 2 O O1 GOL . . . E 5 -31.511 -52.621 8.794 1 50.25 0 O1 GOL 504 A 1 HETATM 3 C C2 GOL . . . E 5 -30.302 -52.484 6.69 1 44.12 0 C2 GOL 504 A 1 HETATM 4 O O2 GOL . . . E 5 -28.992 -52.586 6.134 1 37.65 0 O2 GOL 504 A 1 HETATM 5 C C3 GOL . . . E 5 -31.225 -53.455 5.988 1 49 0 C3 GOL 504 A 1 HETATM 6 O O3 GOL . . . E 5 -31.056 -53.415 4.572 1 50.77 0 O3 GOL 504 A 1 HETATM 7 H H11 GOL . . . E 5 -29.816 -53.553 8.378 1 43.02 0 H11 GOL 504 A 1 HETATM 8 H H12 GOL . . . E 5 -29.65 -51.981 8.578 1 43 0 H12 GOL 504 A 1 HETATM 9 H HO1 GOL . . . E 5 -31.4 -52.742 9.639 0 50.49 0 HO1 GOL 504 A 1 HETATM 10 H H2 GOL . . . E 5 -30.638 -51.572 6.52 1 42.68 0 H2 GOL 504 A 1 HETATM 11 H HO2 GOL . . . E 5 -29.006 -53.154 5.517 0 37.91 0 HO2 GOL 504 A 1 HETATM 12 H H31 GOL . . . E 5 -32.16 -53.233 6.211 1 48.08 0 H31 GOL 504 A 1 HETATM 13 H H32 GOL . . . E 5 -31.04 -54.37 6.311 1 48.23 0 H32 GOL 504 A 1 HETATM 14 H HO3 GOL . . . E 5 -30.632 -52.712 4.364 1 50.16 0 HO3 GOL 504 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #