data_8QX0 # _model_server_result.job_id Q5a55iOKI9KVBGmqiBrBww _model_server_result.datetime_utc '2024-11-27 02:20:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8QX0 # _exptl.entry_id 8QX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.5 _cell.angle_gamma 90 _cell.entry_id 8QX0 _cell.length_a 62.63 _cell.length_b 39.811 _cell.length_c 63.56 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 15 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf2 A SG CYS 14 A CYS 14 1_555 A SG CYS 280 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 33 A CYS 33 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 244 A CYS 244 1_555 A SG CYS 310 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc1 A OD1 ASP 35 A ASP 35 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc2 A O ASP 47 A ASP 47 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc3 A OD1 ASP 47 A ASP 47 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A O GLY 59 A GLY 59 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc5 A OD1 ASP 61 A ASP 61 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 A OG SER 63 A SER 63 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc7 A NE2 HIS 171 A HIS 171 1_555 C FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc8 A O SER 172 A SER 172 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 A OG SER 172 A SER 172 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc10 A OD2 ASP 177 A ASP 177 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc11 A OD1 ASP 189 A ASP 189 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc12 A OD2 ASP 189 A ASP 189 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc13 A O THR 191 A THR 191 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc14 A OG1 THR 191 A THR 191 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc15 A O ILE 194 A ILE 194 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc16 A OD1 ASP 196 A ASP 196 1_555 I CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc17 A OE1 GLN 333 A GLN 333 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc18 B MN MN . A MN 401 1_555 C O2D HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc19 B MN MN . A MN 401 1_555 J O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc20 B MN MN . A MN 401 1_555 J O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc21 H CA CA . A CA 407 1_555 J O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc22 H CA CA . A CA 407 1_555 J O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 332 n n C1 C2 PEG sing 333 n n C1 H11 PEG sing 334 n n C1 H12 PEG sing 335 n n O1 HO1 PEG sing 336 n n C2 O2 PEG sing 337 n n C2 H21 PEG sing 338 n n C2 H22 PEG sing 339 n n O2 C3 PEG sing 340 n n C3 C4 PEG sing 341 n n C3 H31 PEG sing 342 n n C3 H32 PEG sing 343 n n C4 O4 PEG sing 344 n n C4 H41 PEG sing 345 n n C4 H42 PEG sing 346 n n O4 HO4 PEG sing 347 n n # _atom_sites.entry_id 8QX0 _atom_sites.fract_transf_matrix[1][1] 0.015967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003248 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 400 MN MN . C 3 HEM A 1 402 500 HEM HEM . D 4 PEG A 1 403 501 PEG PEG . E 4 PEG A 1 404 502 PEG PEG . F 4 PEG A 1 405 503 PEG PEG . G 5 GOL A 1 406 504 GOL GOL . H 6 CA A 1 407 1 CA CA . I 6 CA A 1 408 2 CA CA . J 7 HOH A 1 501 130 HOH HOH . J 7 HOH A 2 502 166 HOH HOH . J 7 HOH A 3 503 169 HOH HOH . J 7 HOH A 4 504 33 HOH HOH . J 7 HOH A 5 505 119 HOH HOH . J 7 HOH A 6 506 46 HOH HOH . J 7 HOH A 7 507 141 HOH HOH . J 7 HOH A 8 508 57 HOH HOH . J 7 HOH A 9 509 56 HOH HOH . J 7 HOH A 10 510 157 HOH HOH . J 7 HOH A 11 511 61 HOH HOH . J 7 HOH A 12 512 131 HOH HOH . J 7 HOH A 13 513 82 HOH HOH . J 7 HOH A 14 514 5 HOH HOH . J 7 HOH A 15 515 94 HOH HOH . J 7 HOH A 16 516 74 HOH HOH . J 7 HOH A 17 517 31 HOH HOH . J 7 HOH A 18 518 145 HOH HOH . J 7 HOH A 19 519 155 HOH HOH . J 7 HOH A 20 520 115 HOH HOH . J 7 HOH A 21 521 132 HOH HOH . J 7 HOH A 22 522 107 HOH HOH . J 7 HOH A 23 523 71 HOH HOH . J 7 HOH A 24 524 42 HOH HOH . J 7 HOH A 25 525 174 HOH HOH . J 7 HOH A 26 526 30 HOH HOH . J 7 HOH A 27 527 50 HOH HOH . J 7 HOH A 28 528 36 HOH HOH . J 7 HOH A 29 529 164 HOH HOH . J 7 HOH A 30 530 54 HOH HOH . J 7 HOH A 31 531 154 HOH HOH . J 7 HOH A 32 532 121 HOH HOH . J 7 HOH A 33 533 147 HOH HOH . J 7 HOH A 34 534 16 HOH HOH . J 7 HOH A 35 535 93 HOH HOH . J 7 HOH A 36 536 1 HOH HOH . J 7 HOH A 37 537 27 HOH HOH . J 7 HOH A 38 538 21 HOH HOH . J 7 HOH A 39 539 95 HOH HOH . J 7 HOH A 40 540 17 HOH HOH . J 7 HOH A 41 541 13 HOH HOH . J 7 HOH A 42 542 47 HOH HOH . J 7 HOH A 43 543 64 HOH HOH . J 7 HOH A 44 544 98 HOH HOH . J 7 HOH A 45 545 88 HOH HOH . J 7 HOH A 46 546 65 HOH HOH . J 7 HOH A 47 547 113 HOH HOH . J 7 HOH A 48 548 80 HOH HOH . J 7 HOH A 49 549 8 HOH HOH . J 7 HOH A 50 550 75 HOH HOH . J 7 HOH A 51 551 156 HOH HOH . J 7 HOH A 52 552 67 HOH HOH . J 7 HOH A 53 553 7 HOH HOH . J 7 HOH A 54 554 86 HOH HOH . J 7 HOH A 55 555 114 HOH HOH . J 7 HOH A 56 556 110 HOH HOH . J 7 HOH A 57 557 3 HOH HOH . J 7 HOH A 58 558 41 HOH HOH . J 7 HOH A 59 559 2 HOH HOH . J 7 HOH A 60 560 97 HOH HOH . J 7 HOH A 61 561 18 HOH HOH . J 7 HOH A 62 562 161 HOH HOH . J 7 HOH A 63 563 150 HOH HOH . J 7 HOH A 64 564 92 HOH HOH . J 7 HOH A 65 565 19 HOH HOH . J 7 HOH A 66 566 146 HOH HOH . J 7 HOH A 67 567 143 HOH HOH . J 7 HOH A 68 568 35 HOH HOH . J 7 HOH A 69 569 76 HOH HOH . J 7 HOH A 70 570 11 HOH HOH . J 7 HOH A 71 571 124 HOH HOH . J 7 HOH A 72 572 118 HOH HOH . J 7 HOH A 73 573 20 HOH HOH . J 7 HOH A 74 574 158 HOH HOH . J 7 HOH A 75 575 153 HOH HOH . J 7 HOH A 76 576 28 HOH HOH . J 7 HOH A 77 577 70 HOH HOH . J 7 HOH A 78 578 23 HOH HOH . J 7 HOH A 79 579 26 HOH HOH . J 7 HOH A 80 580 69 HOH HOH . J 7 HOH A 81 581 44 HOH HOH . J 7 HOH A 82 582 6 HOH HOH . J 7 HOH A 83 583 105 HOH HOH . J 7 HOH A 84 584 133 HOH HOH . J 7 HOH A 85 585 63 HOH HOH . J 7 HOH A 86 586 58 HOH HOH . J 7 HOH A 87 587 68 HOH HOH . J 7 HOH A 88 588 52 HOH HOH . J 7 HOH A 89 589 99 HOH HOH . J 7 HOH A 90 590 25 HOH HOH . J 7 HOH A 91 591 87 HOH HOH . J 7 HOH A 92 592 48 HOH HOH . J 7 HOH A 93 593 84 HOH HOH . J 7 HOH A 94 594 126 HOH HOH . J 7 HOH A 95 595 45 HOH HOH . J 7 HOH A 96 596 152 HOH HOH . J 7 HOH A 97 597 9 HOH HOH . J 7 HOH A 98 598 89 HOH HOH . J 7 HOH A 99 599 10 HOH HOH . J 7 HOH A 100 600 29 HOH HOH . J 7 HOH A 101 601 34 HOH HOH . J 7 HOH A 102 602 91 HOH HOH . J 7 HOH A 103 603 138 HOH HOH . J 7 HOH A 104 604 72 HOH HOH . J 7 HOH A 105 605 151 HOH HOH . J 7 HOH A 106 606 24 HOH HOH . J 7 HOH A 107 607 38 HOH HOH . J 7 HOH A 108 608 104 HOH HOH . J 7 HOH A 109 609 53 HOH HOH . J 7 HOH A 110 610 51 HOH HOH . J 7 HOH A 111 611 163 HOH HOH . J 7 HOH A 112 612 12 HOH HOH . J 7 HOH A 113 613 142 HOH HOH . J 7 HOH A 114 614 15 HOH HOH . J 7 HOH A 115 615 22 HOH HOH . J 7 HOH A 116 616 176 HOH HOH . J 7 HOH A 117 617 117 HOH HOH . J 7 HOH A 118 618 134 HOH HOH . J 7 HOH A 119 619 162 HOH HOH . J 7 HOH A 120 620 139 HOH HOH . J 7 HOH A 121 621 148 HOH HOH . J 7 HOH A 122 622 173 HOH HOH . J 7 HOH A 123 623 149 HOH HOH . J 7 HOH A 124 624 79 HOH HOH . J 7 HOH A 125 625 62 HOH HOH . J 7 HOH A 126 626 90 HOH HOH . J 7 HOH A 127 627 127 HOH HOH . J 7 HOH A 128 628 4 HOH HOH . J 7 HOH A 129 629 111 HOH HOH . J 7 HOH A 130 630 177 HOH HOH . J 7 HOH A 131 631 43 HOH HOH . J 7 HOH A 132 632 37 HOH HOH . J 7 HOH A 133 633 116 HOH HOH . J 7 HOH A 134 634 96 HOH HOH . J 7 HOH A 135 635 108 HOH HOH . J 7 HOH A 136 636 81 HOH HOH . J 7 HOH A 137 637 135 HOH HOH . J 7 HOH A 138 638 125 HOH HOH . J 7 HOH A 139 639 140 HOH HOH . J 7 HOH A 140 640 59 HOH HOH . J 7 HOH A 141 641 123 HOH HOH . J 7 HOH A 142 642 137 HOH HOH . J 7 HOH A 143 643 160 HOH HOH . J 7 HOH A 144 644 39 HOH HOH . J 7 HOH A 145 645 40 HOH HOH . J 7 HOH A 146 646 100 HOH HOH . J 7 HOH A 147 647 106 HOH HOH . J 7 HOH A 148 648 101 HOH HOH . J 7 HOH A 149 649 112 HOH HOH . J 7 HOH A 150 650 85 HOH HOH . J 7 HOH A 151 651 120 HOH HOH . J 7 HOH A 152 652 77 HOH HOH . J 7 HOH A 153 653 32 HOH HOH . J 7 HOH A 154 654 167 HOH HOH . J 7 HOH A 155 655 170 HOH HOH . J 7 HOH A 156 656 73 HOH HOH . J 7 HOH A 157 657 49 HOH HOH . J 7 HOH A 158 658 83 HOH HOH . J 7 HOH A 159 659 66 HOH HOH . J 7 HOH A 160 660 136 HOH HOH . J 7 HOH A 161 661 128 HOH HOH . J 7 HOH A 162 662 55 HOH HOH . J 7 HOH A 163 663 122 HOH HOH . J 7 HOH A 164 664 102 HOH HOH . J 7 HOH A 165 665 14 HOH HOH . J 7 HOH A 166 666 109 HOH HOH . J 7 HOH A 167 667 78 HOH HOH . J 7 HOH A 168 668 178 HOH HOH . J 7 HOH A 169 669 144 HOH HOH . J 7 HOH A 170 670 179 HOH HOH . J 7 HOH A 171 671 165 HOH HOH . J 7 HOH A 172 672 129 HOH HOH . J 7 HOH A 173 673 171 HOH HOH . J 7 HOH A 174 674 60 HOH HOH . J 7 HOH A 175 675 172 HOH HOH . J 7 HOH A 176 676 175 HOH HOH . J 7 HOH A 177 677 159 HOH HOH . J 7 HOH A 178 678 103 HOH HOH . J 7 HOH A 179 679 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . E 4 -25.732 3.427 34.389 1 37.33 0 C1 PEG 404 A 1 HETATM 2 O O1 PEG . . . E 4 -25.075 4.655 34.27 1 41.51 0 O1 PEG 404 A 1 HETATM 3 C C2 PEG . . . E 4 -26.487 3.065 33.158 1 38.62 0 C2 PEG 404 A 1 HETATM 4 O O2 PEG . . . E 4 -27.52 2.147 33.506 1 44.87 0 O2 PEG 404 A 1 HETATM 5 C C3 PEG . . . E 4 -27.319 0.815 33.04 1 45.97 0 C3 PEG 404 A 1 HETATM 6 C C4 PEG . . . E 4 -27.141 -0.11 34.201 1 47.92 0 C4 PEG 404 A 1 HETATM 7 O O4 PEG . . . E 4 -26.588 -1.362 33.826 1 47.74 0 O4 PEG 404 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 7 #