data_8QX1
#
_model_server_result.job_id            rjjyFNdlkaSE3h9oj-iXKA 
_model_server_result.datetime_utc      '2024-11-24 20:29:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qx1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1004}' 
#
_entry.id    8QX1 
#
_exptl.entry_id    8QX1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    19 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QX1 
_cell.length_a            242.38 
_cell.length_b            242.38 
_cell.length_c            396.04 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QX1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    'I 4bw 2bw' 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,CA,DA 1 1 
A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,CA,DA 1 3 
C,R,S,T,U,V,W,X,Y,Z,AA,BA,EA 2 1 
C,R,S,T,U,V,W,X,Y,Z,AA,BA,EA 2 2 
C,R,S,T,U,V,W,X,Y,Z,AA,BA,EA 2 3 
C,R,S,T,U,V,W,X,Y,Z,AA,BA,EA 2 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 242.38 242.38 396.04 
3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 242.38 242.38 0 
4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 396.04 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 F O4 PEG . A PEG 1003 1_555 G C1 PEG . A PEG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale2 H O4 PEG . A PEG 1005 1_555 I C1 PEG . A PEG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale3 H C1 PEG . A PEG 1005 1_555 M O4 PEG . B PEG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale4 N O4 PEG . B PEG 1004 1_555 O C1 PEG . B PEG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale5 P O4 PEG . B PEG 1006 1_555 Q C1 PEG . B PEG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale6 T O4 PEG . C PEG 1003 1_555 U C1 PEG . C PEG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale7 V O4 PEG . C PEG 1005 1_555 W C1 PEG . C PEG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale8 X O4 PEG . C PEG 1007 1_555 Y C1 PEG . C PEG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale9 AA O4 PEG . C PEG 1010 1_555 BA C1 PEG . C PEG 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 251 n n 
C1 C2 PEG sing 252 n n 
C1 H11 PEG sing 253 n n 
C1 H12 PEG sing 254 n n 
O1 HO1 PEG sing 255 n n 
C2 O2 PEG sing 256 n n 
C2 H21 PEG sing 257 n n 
C2 H22 PEG sing 258 n n 
O2 C3 PEG sing 259 n n 
C3 C4 PEG sing 260 n n 
C3 H31 PEG sing 261 n n 
C3 H32 PEG sing 262 n n 
C4 O4 PEG sing 263 n n 
C4 H41 PEG sing 264 n n 
C4 H42 PEG sing 265 n n 
O4 HO4 PEG sing 266 n n 
#
_atom_sites.entry_id                     8QX1 
_atom_sites.fract_transf_matrix[1][1]    0.004126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 LMR A 1 1001 1001 LMR LMR . 
E 3 CL A 1 1002 2 CL CL . 
F 4 PEG A 1 1003 6 PEG PEG . 
G 4 PEG A 1 1004 7 PEG PEG . 
H 4 PEG A 1 1005 9 PEG PEG . 
I 4 PEG A 1 1006 10 PEG PEG . 
J 4 PEG A 1 1007 22 PEG PEG . 
K 2 LMR B 1 1001 1002 LMR LMR . 
L 3 CL B 1 1002 1 CL CL . 
M 4 PEG B 1 1003 8 PEG PEG . 
N 4 PEG B 1 1004 11 PEG PEG . 
O 4 PEG B 1 1005 12 PEG PEG . 
P 4 PEG B 1 1006 20 PEG PEG . 
Q 4 PEG B 1 1007 21 PEG PEG . 
R 2 LMR C 1 1001 1003 LMR LMR . 
S 3 CL C 1 1002 3 CL CL . 
T 4 PEG C 1 1003 4 PEG PEG . 
U 4 PEG C 1 1004 5 PEG PEG . 
V 4 PEG C 1 1005 13 PEG PEG . 
W 4 PEG C 1 1006 14 PEG PEG . 
X 4 PEG C 1 1007 15 PEG PEG . 
Y 4 PEG C 1 1008 16 PEG PEG . 
Z 4 PEG C 1 1009 17 PEG PEG . 
AA 4 PEG C 1 1010 18 PEG PEG . 
BA 4 PEG C 1 1011 19 PEG PEG . 
CA 5 HOH A 1 1101 35 HOH HOH . 
CA 5 HOH A 2 1102 31 HOH HOH . 
CA 5 HOH A 3 1103 72 HOH HOH . 
CA 5 HOH A 4 1104 30 HOH HOH . 
CA 5 HOH A 5 1105 29 HOH HOH . 
CA 5 HOH A 6 1106 37 HOH HOH . 
CA 5 HOH A 7 1107 36 HOH HOH . 
CA 5 HOH A 8 1108 23 HOH HOH . 
CA 5 HOH A 9 1109 32 HOH HOH . 
CA 5 HOH A 10 1110 117 HOH HOH . 
CA 5 HOH A 11 1111 38 HOH HOH . 
CA 5 HOH A 12 1112 116 HOH HOH . 
CA 5 HOH A 13 1113 119 HOH HOH . 
CA 5 HOH A 14 1114 118 HOH HOH . 
CA 5 HOH A 15 1115 121 HOH HOH . 
CA 5 HOH A 16 1116 125 HOH HOH . 
CA 5 HOH A 17 1117 113 HOH HOH . 
CA 5 HOH A 18 1118 123 HOH HOH . 
CA 5 HOH A 19 1119 26 HOH HOH . 
CA 5 HOH A 20 1120 34 HOH HOH . 
CA 5 HOH A 21 1121 28 HOH HOH . 
CA 5 HOH A 22 1122 46 HOH HOH . 
CA 5 HOH A 23 1123 24 HOH HOH . 
CA 5 HOH A 24 1124 33 HOH HOH . 
CA 5 HOH A 25 1125 120 HOH HOH . 
CA 5 HOH A 26 1126 27 HOH HOH . 
CA 5 HOH A 27 1127 122 HOH HOH . 
CA 5 HOH A 28 1128 126 HOH HOH . 
CA 5 HOH A 29 1129 80 HOH HOH . 
CA 5 HOH A 30 1130 25 HOH HOH . 
CA 5 HOH A 31 1131 124 HOH HOH . 
DA 5 HOH B 1 1101 45 HOH HOH . 
DA 5 HOH B 2 1102 73 HOH HOH . 
DA 5 HOH B 3 1103 127 HOH HOH . 
DA 5 HOH B 4 1104 42 HOH HOH . 
DA 5 HOH B 5 1105 43 HOH HOH . 
DA 5 HOH B 6 1106 112 HOH HOH . 
DA 5 HOH B 7 1107 39 HOH HOH . 
DA 5 HOH B 8 1108 110 HOH HOH . 
DA 5 HOH B 9 1109 115 HOH HOH . 
DA 5 HOH B 10 1110 109 HOH HOH . 
DA 5 HOH B 11 1111 114 HOH HOH . 
DA 5 HOH B 12 1112 40 HOH HOH . 
DA 5 HOH B 13 1113 41 HOH HOH . 
DA 5 HOH B 14 1114 111 HOH HOH . 
DA 5 HOH B 15 1115 44 HOH HOH . 
EA 5 HOH C 1 1101 108 HOH HOH . 
EA 5 HOH C 2 1102 75 HOH HOH . 
EA 5 HOH C 3 1103 104 HOH HOH . 
EA 5 HOH C 4 1104 98 HOH HOH . 
EA 5 HOH C 5 1105 107 HOH HOH . 
EA 5 HOH C 6 1106 61 HOH HOH . 
EA 5 HOH C 7 1107 68 HOH HOH . 
EA 5 HOH C 8 1108 65 HOH HOH . 
EA 5 HOH C 9 1109 55 HOH HOH . 
EA 5 HOH C 10 1110 64 HOH HOH . 
EA 5 HOH C 11 1111 63 HOH HOH . 
EA 5 HOH C 12 1112 47 HOH HOH . 
EA 5 HOH C 13 1113 54 HOH HOH . 
EA 5 HOH C 14 1114 89 HOH HOH . 
EA 5 HOH C 15 1115 56 HOH HOH . 
EA 5 HOH C 16 1116 106 HOH HOH . 
EA 5 HOH C 17 1117 71 HOH HOH . 
EA 5 HOH C 18 1118 67 HOH HOH . 
EA 5 HOH C 19 1119 74 HOH HOH . 
EA 5 HOH C 20 1120 88 HOH HOH . 
EA 5 HOH C 21 1121 50 HOH HOH . 
EA 5 HOH C 22 1122 85 HOH HOH . 
EA 5 HOH C 23 1123 87 HOH HOH . 
EA 5 HOH C 24 1124 83 HOH HOH . 
EA 5 HOH C 25 1125 49 HOH HOH . 
EA 5 HOH C 26 1126 97 HOH HOH . 
EA 5 HOH C 27 1127 102 HOH HOH . 
EA 5 HOH C 28 1128 51 HOH HOH . 
EA 5 HOH C 29 1129 103 HOH HOH . 
EA 5 HOH C 30 1130 105 HOH HOH . 
EA 5 HOH C 31 1131 84 HOH HOH . 
EA 5 HOH C 32 1132 60 HOH HOH . 
EA 5 HOH C 33 1133 86 HOH HOH . 
EA 5 HOH C 34 1134 91 HOH HOH . 
EA 5 HOH C 35 1135 82 HOH HOH . 
EA 5 HOH C 36 1136 69 HOH HOH . 
EA 5 HOH C 37 1137 93 HOH HOH . 
EA 5 HOH C 38 1138 76 HOH HOH . 
EA 5 HOH C 39 1139 48 HOH HOH . 
EA 5 HOH C 40 1140 95 HOH HOH . 
EA 5 HOH C 41 1141 99 HOH HOH . 
EA 5 HOH C 42 1142 66 HOH HOH . 
EA 5 HOH C 43 1143 96 HOH HOH . 
EA 5 HOH C 44 1144 62 HOH HOH . 
EA 5 HOH C 45 1145 100 HOH HOH . 
EA 5 HOH C 46 1146 94 HOH HOH . 
EA 5 HOH C 47 1147 77 HOH HOH . 
EA 5 HOH C 48 1148 90 HOH HOH . 
EA 5 HOH C 49 1149 52 HOH HOH . 
EA 5 HOH C 50 1150 92 HOH HOH . 
EA 5 HOH C 51 1151 57 HOH HOH . 
EA 5 HOH C 52 1152 59 HOH HOH . 
EA 5 HOH C 53 1153 81 HOH HOH . 
EA 5 HOH C 54 1154 53 HOH HOH . 
EA 5 HOH C 55 1155 58 HOH HOH . 
EA 5 HOH C 56 1156 78 HOH HOH . 
EA 5 HOH C 57 1157 70 HOH HOH . 
EA 5 HOH C 58 1158 79 HOH HOH . 
EA 5 HOH C 59 1159 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . G 4 104.47 83.952 312.338 1 65.96 ? C1 PEG 1004 A 1 
HETATM 2 C C2 PEG . . . G 4 105.991 83.957 312.518 1 47.22 ? C2 PEG 1004 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           2 
#