data_8QY1 # _model_server_result.job_id '_lm2EYt5ArMzHbZg86Tmig' _model_server_result.datetime_utc '2024-11-12 21:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 8QY1 # _exptl.entry_id 8QY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QY1 _cell.length_a 78.05 _cell.length_b 78.05 _cell.length_c 133.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F,G,L 1 1 B,E,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 XYP XYP C1 O1 . O4 HO4 . sing 2 ? 3 2 1 XYP XYP C1 O1 . O4 HO4 . sing 3 ? 3 3 2 XYP XYP C1 O1 . O4 HO4 . sing 4 ? 3 4 3 XYP XYP C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C XYP 1 E 1 XYP E 2 XYP 2 n C XYP 2 E 2 XYP E 1 XYP 3 n D XYP 1 F 1 XYP F 1 XYP 3 n D XYP 2 F 2 XYP F 2 XYP 3 n D XYP 3 F 3 XYP F 3 XYP 3 n D XYP 4 F 4 XYP F 4 XYP 3 n E XYP 1 G 1 XYP G 4 XYP 3 n E XYP 2 G 2 XYP G 3 XYP 3 n E XYP 3 G 3 XYP G 2 XYP 3 n E XYP 4 G 4 XYP G 1 XYP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 XYP . E XYP 1 1_555 C C1 XYP . E XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale2 D O4 XYP . F XYP 1 1_555 D C1 XYP . F XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale3 D O4 XYP . F XYP 2 1_555 D C1 XYP . F XYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale4 D O4 XYP . F XYP 3 1_555 D C1 XYP . F XYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale5 E O4 XYP . G XYP 1 1_555 E C1 XYP . G XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale6 E O4 XYP . G XYP 2 1_555 E C1 XYP . G XYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale7 E O4 XYP . G XYP 3 1_555 E C1 XYP . G XYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? metalc ? metalc1 A NE2 HIS 156 A HIS 156 1_555 F ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc2 F ZN ZN . A ZN 201 1_555 G O8 BTB . A BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc3 F ZN ZN . A ZN 201 1_555 G O1 BTB . A BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 F ZN ZN . A ZN 201 1_555 G O4 BTB . A BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc5 F ZN ZN . A ZN 201 1_555 G N BTB . A BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 F ZN ZN . A ZN 201 1_555 G O6 BTB . A BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc7 B NE2 HIS 156 B HIS 156 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc8 H ZN ZN . B ZN 201 1_555 I O3 BTB . B BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 H ZN ZN . B ZN 201 1_555 I O4 BTB . B BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 H ZN ZN . B ZN 201 1_555 I N BTB . B BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc11 H ZN ZN . B ZN 201 1_555 I O6 BTB . B BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc12 H ZN ZN . B ZN 201 1_555 I O8 BTB . B BTB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8QY1 _atom_sites.fract_transf_matrix[1][1] 0.012812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 ZN A 1 201 1 ZN ZN . G 5 BTB A 1 202 3 BTB BTB . H 4 ZN B 1 201 2 ZN ZN . I 5 BTB B 1 202 4 BTB BTB . J 6 ACT B 1 203 5 ACT ACT . K 6 ACT B 1 204 6 ACT ACT . L 7 HOH A 1 301 73 HOH HOH . L 7 HOH A 2 302 85 HOH HOH . L 7 HOH A 3 303 122 HOH HOH . L 7 HOH A 4 304 76 HOH HOH . L 7 HOH A 5 305 53 HOH HOH . L 7 HOH A 6 306 80 HOH HOH . L 7 HOH A 7 307 11 HOH HOH . L 7 HOH A 8 308 15 HOH HOH . L 7 HOH A 9 309 51 HOH HOH . L 7 HOH A 10 310 87 HOH HOH . L 7 HOH A 11 311 16 HOH HOH . L 7 HOH A 12 312 25 HOH HOH . L 7 HOH A 13 313 1 HOH HOH . L 7 HOH A 14 314 82 HOH HOH . L 7 HOH A 15 315 5 HOH HOH . L 7 HOH A 16 316 116 HOH HOH . L 7 HOH A 17 317 77 HOH HOH . L 7 HOH A 18 318 58 HOH HOH . L 7 HOH A 19 319 18 HOH HOH . L 7 HOH A 20 320 29 HOH HOH . L 7 HOH A 21 321 39 HOH HOH . L 7 HOH A 22 322 50 HOH HOH . L 7 HOH A 23 323 134 HOH HOH . L 7 HOH A 24 324 12 HOH HOH . L 7 HOH A 25 325 97 HOH HOH . L 7 HOH A 26 326 154 HOH HOH . L 7 HOH A 27 327 45 HOH HOH . L 7 HOH A 28 328 41 HOH HOH . L 7 HOH A 29 329 7 HOH HOH . L 7 HOH A 30 330 55 HOH HOH . L 7 HOH A 31 331 78 HOH HOH . L 7 HOH A 32 332 131 HOH HOH . L 7 HOH A 33 333 32 HOH HOH . L 7 HOH A 34 334 128 HOH HOH . L 7 HOH A 35 335 95 HOH HOH . L 7 HOH A 36 336 33 HOH HOH . L 7 HOH A 37 337 90 HOH HOH . L 7 HOH A 38 338 4 HOH HOH . L 7 HOH A 39 339 102 HOH HOH . L 7 HOH A 40 340 101 HOH HOH . L 7 HOH A 41 341 68 HOH HOH . L 7 HOH A 42 342 26 HOH HOH . L 7 HOH A 43 343 111 HOH HOH . L 7 HOH A 44 344 81 HOH HOH . L 7 HOH A 45 345 124 HOH HOH . L 7 HOH A 46 346 75 HOH HOH . L 7 HOH A 47 347 126 HOH HOH . L 7 HOH A 48 348 125 HOH HOH . L 7 HOH A 49 349 88 HOH HOH . L 7 HOH A 50 350 91 HOH HOH . L 7 HOH A 51 351 107 HOH HOH . L 7 HOH A 52 352 31 HOH HOH . L 7 HOH A 53 353 94 HOH HOH . L 7 HOH A 54 354 74 HOH HOH . L 7 HOH A 55 355 38 HOH HOH . L 7 HOH A 56 356 34 HOH HOH . L 7 HOH A 57 357 92 HOH HOH . L 7 HOH A 58 358 89 HOH HOH . L 7 HOH A 59 359 10 HOH HOH . L 7 HOH A 60 360 65 HOH HOH . L 7 HOH A 61 361 117 HOH HOH . L 7 HOH A 62 362 129 HOH HOH . L 7 HOH A 63 363 49 HOH HOH . L 7 HOH A 64 364 119 HOH HOH . L 7 HOH A 65 365 64 HOH HOH . L 7 HOH A 66 366 146 HOH HOH . L 7 HOH A 67 367 121 HOH HOH . L 7 HOH A 68 368 70 HOH HOH . L 7 HOH A 69 369 99 HOH HOH . L 7 HOH A 70 370 123 HOH HOH . L 7 HOH A 71 371 93 HOH HOH . L 7 HOH A 72 372 156 HOH HOH . L 7 HOH A 73 373 130 HOH HOH . L 7 HOH A 74 374 110 HOH HOH . L 7 HOH A 75 375 143 HOH HOH . L 7 HOH A 76 376 145 HOH HOH . L 7 HOH A 77 377 138 HOH HOH . L 7 HOH A 78 378 71 HOH HOH . L 7 HOH A 79 379 144 HOH HOH . L 7 HOH A 80 380 132 HOH HOH . L 7 HOH A 81 381 57 HOH HOH . L 7 HOH A 82 382 135 HOH HOH . L 7 HOH A 83 383 120 HOH HOH . L 7 HOH A 84 384 158 HOH HOH . L 7 HOH A 85 385 157 HOH HOH . L 7 HOH A 86 386 127 HOH HOH . L 7 HOH A 87 387 118 HOH HOH . L 7 HOH A 88 388 142 HOH HOH . L 7 HOH A 89 389 163 HOH HOH . M 7 HOH B 1 301 165 HOH HOH . M 7 HOH B 2 302 56 HOH HOH . M 7 HOH B 3 303 21 HOH HOH . M 7 HOH B 4 304 19 HOH HOH . M 7 HOH B 5 305 6 HOH HOH . M 7 HOH B 6 306 28 HOH HOH . M 7 HOH B 7 307 79 HOH HOH . M 7 HOH B 8 308 2 HOH HOH . M 7 HOH B 9 309 43 HOH HOH . M 7 HOH B 10 310 46 HOH HOH . M 7 HOH B 11 311 47 HOH HOH . M 7 HOH B 12 312 20 HOH HOH . M 7 HOH B 13 313 17 HOH HOH . M 7 HOH B 14 314 63 HOH HOH . M 7 HOH B 15 315 44 HOH HOH . M 7 HOH B 16 316 103 HOH HOH . M 7 HOH B 17 317 52 HOH HOH . M 7 HOH B 18 318 48 HOH HOH . M 7 HOH B 19 319 66 HOH HOH . M 7 HOH B 20 320 54 HOH HOH . M 7 HOH B 21 321 23 HOH HOH . M 7 HOH B 22 322 24 HOH HOH . M 7 HOH B 23 323 3 HOH HOH . M 7 HOH B 24 324 59 HOH HOH . M 7 HOH B 25 325 114 HOH HOH . M 7 HOH B 26 326 40 HOH HOH . M 7 HOH B 27 327 155 HOH HOH . M 7 HOH B 28 328 8 HOH HOH . M 7 HOH B 29 329 151 HOH HOH . M 7 HOH B 30 330 42 HOH HOH . M 7 HOH B 31 331 13 HOH HOH . M 7 HOH B 32 332 96 HOH HOH . M 7 HOH B 33 333 9 HOH HOH . M 7 HOH B 34 334 30 HOH HOH . M 7 HOH B 35 335 14 HOH HOH . M 7 HOH B 36 336 133 HOH HOH . M 7 HOH B 37 337 104 HOH HOH . M 7 HOH B 38 338 35 HOH HOH . M 7 HOH B 39 339 67 HOH HOH . M 7 HOH B 40 340 108 HOH HOH . M 7 HOH B 41 341 106 HOH HOH . M 7 HOH B 42 342 84 HOH HOH . M 7 HOH B 43 343 113 HOH HOH . M 7 HOH B 44 344 86 HOH HOH . M 7 HOH B 45 345 98 HOH HOH . M 7 HOH B 46 346 69 HOH HOH . M 7 HOH B 47 347 22 HOH HOH . M 7 HOH B 48 348 164 HOH HOH . M 7 HOH B 49 349 147 HOH HOH . M 7 HOH B 50 350 36 HOH HOH . M 7 HOH B 51 351 141 HOH HOH . M 7 HOH B 52 352 37 HOH HOH . M 7 HOH B 53 353 27 HOH HOH . M 7 HOH B 54 354 148 HOH HOH . M 7 HOH B 55 355 149 HOH HOH . M 7 HOH B 56 356 153 HOH HOH . M 7 HOH B 57 357 72 HOH HOH . M 7 HOH B 58 358 60 HOH HOH . M 7 HOH B 59 359 112 HOH HOH . M 7 HOH B 60 360 100 HOH HOH . M 7 HOH B 61 361 162 HOH HOH . M 7 HOH B 62 362 137 HOH HOH . M 7 HOH B 63 363 136 HOH HOH . M 7 HOH B 64 364 62 HOH HOH . M 7 HOH B 65 365 105 HOH HOH . M 7 HOH B 66 366 152 HOH HOH . M 7 HOH B 67 367 61 HOH HOH . M 7 HOH B 68 368 161 HOH HOH . M 7 HOH B 69 369 159 HOH HOH . M 7 HOH B 70 370 83 HOH HOH . M 7 HOH B 71 371 160 HOH HOH . M 7 HOH B 72 372 109 HOH HOH . M 7 HOH B 73 373 150 HOH HOH . M 7 HOH B 74 374 140 HOH HOH . M 7 HOH B 75 375 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -12.81 _atom_site.Cartn_y -32.415 _atom_site.Cartn_z -31.991 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.76 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #