data_8QY2 # _model_server_result.job_id -fYcUbI2Ngo7zD-cY0Queg _model_server_result.datetime_utc '2024-11-12 21:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8QY2 # _exptl.entry_id 8QY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QY2 _cell.length_a 78.714 _cell.length_b 78.714 _cell.length_c 131.998 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 119 A ASP 119 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc2 A OD2 ASP 119 A ASP 119 1_555 F ZN ZN . A ZN 205 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc3 A OD2 ASP 121 A ASP 121 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc4 A OD2 ASP 121 A ASP 121 1_555 F ZN ZN . A ZN 205 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc5 A NE2 HIS 156 A HIS 156 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc6 E ZN ZN . A ZN 204 1_555 G O1 BTB . A BTB 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 E ZN ZN . A ZN 204 1_555 G N BTB . A BTB 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc8 E ZN ZN . A ZN 204 1_555 G O4 BTB . A BTB 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc9 E ZN ZN . A ZN 204 1_555 G O6 BTB . A BTB 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc10 E ZN ZN . A ZN 204 1_555 G O8 BTB . A BTB 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 148 n n C1 C2 GOL sing 149 n n C1 H11 GOL sing 150 n n C1 H12 GOL sing 151 n n O1 HO1 GOL sing 152 n n C2 O2 GOL sing 153 n n C2 C3 GOL sing 154 n n C2 H2 GOL sing 155 n n O2 HO2 GOL sing 156 n n C3 O3 GOL sing 157 n n C3 H31 GOL sing 158 n n C3 H32 GOL sing 159 n n O3 HO3 GOL sing 160 n n # _atom_sites.entry_id 8QY2 _atom_sites.fract_transf_matrix[1][1] 0.012704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 2 GOL GOL . D 2 GOL A 1 203 3 GOL GOL . E 3 ZN A 1 204 4 ZN ZN . F 3 ZN A 1 205 5 ZN ZN . G 4 BTB A 1 206 6 BTB BTB . H 5 HOH A 1 301 15 HOH HOH . H 5 HOH A 2 302 43 HOH HOH . H 5 HOH A 3 303 35 HOH HOH . H 5 HOH A 4 304 83 HOH HOH . H 5 HOH A 5 305 100 HOH HOH . H 5 HOH A 6 306 54 HOH HOH . H 5 HOH A 7 307 40 HOH HOH . H 5 HOH A 8 308 72 HOH HOH . H 5 HOH A 9 309 114 HOH HOH . H 5 HOH A 10 310 124 HOH HOH . H 5 HOH A 11 311 97 HOH HOH . H 5 HOH A 12 312 86 HOH HOH . H 5 HOH A 13 313 38 HOH HOH . H 5 HOH A 14 314 2 HOH HOH . H 5 HOH A 15 315 76 HOH HOH . H 5 HOH A 16 316 17 HOH HOH . H 5 HOH A 17 317 125 HOH HOH . H 5 HOH A 18 318 8 HOH HOH . H 5 HOH A 19 319 84 HOH HOH . H 5 HOH A 20 320 41 HOH HOH . H 5 HOH A 21 321 127 HOH HOH . H 5 HOH A 22 322 80 HOH HOH . H 5 HOH A 23 323 61 HOH HOH . H 5 HOH A 24 324 6 HOH HOH . H 5 HOH A 25 325 68 HOH HOH . H 5 HOH A 26 326 3 HOH HOH . H 5 HOH A 27 327 22 HOH HOH . H 5 HOH A 28 328 16 HOH HOH . H 5 HOH A 29 329 90 HOH HOH . H 5 HOH A 30 330 14 HOH HOH . H 5 HOH A 31 331 93 HOH HOH . H 5 HOH A 32 332 50 HOH HOH . H 5 HOH A 33 333 126 HOH HOH . H 5 HOH A 34 334 13 HOH HOH . H 5 HOH A 35 335 81 HOH HOH . H 5 HOH A 36 336 44 HOH HOH . H 5 HOH A 37 337 33 HOH HOH . H 5 HOH A 38 338 110 HOH HOH . H 5 HOH A 39 339 5 HOH HOH . H 5 HOH A 40 340 73 HOH HOH . H 5 HOH A 41 341 23 HOH HOH . H 5 HOH A 42 342 108 HOH HOH . H 5 HOH A 43 343 4 HOH HOH . H 5 HOH A 44 344 92 HOH HOH . H 5 HOH A 45 345 37 HOH HOH . H 5 HOH A 46 346 32 HOH HOH . H 5 HOH A 47 347 69 HOH HOH . H 5 HOH A 48 348 63 HOH HOH . H 5 HOH A 49 349 19 HOH HOH . H 5 HOH A 50 350 30 HOH HOH . H 5 HOH A 51 351 25 HOH HOH . H 5 HOH A 52 352 52 HOH HOH . H 5 HOH A 53 353 87 HOH HOH . H 5 HOH A 54 354 47 HOH HOH . H 5 HOH A 55 355 105 HOH HOH . H 5 HOH A 56 356 20 HOH HOH . H 5 HOH A 57 357 11 HOH HOH . H 5 HOH A 58 358 53 HOH HOH . H 5 HOH A 59 359 58 HOH HOH . H 5 HOH A 60 360 119 HOH HOH . H 5 HOH A 61 361 27 HOH HOH . H 5 HOH A 62 362 10 HOH HOH . H 5 HOH A 63 363 1 HOH HOH . H 5 HOH A 64 364 39 HOH HOH . H 5 HOH A 65 365 21 HOH HOH . H 5 HOH A 66 366 31 HOH HOH . H 5 HOH A 67 367 55 HOH HOH . H 5 HOH A 68 368 75 HOH HOH . H 5 HOH A 69 369 74 HOH HOH . H 5 HOH A 70 370 94 HOH HOH . H 5 HOH A 71 371 7 HOH HOH . H 5 HOH A 72 372 82 HOH HOH . H 5 HOH A 73 373 12 HOH HOH . H 5 HOH A 74 374 29 HOH HOH . H 5 HOH A 75 375 115 HOH HOH . H 5 HOH A 76 376 104 HOH HOH . H 5 HOH A 77 377 36 HOH HOH . H 5 HOH A 78 378 49 HOH HOH . H 5 HOH A 79 379 70 HOH HOH . H 5 HOH A 80 380 85 HOH HOH . H 5 HOH A 81 381 111 HOH HOH . H 5 HOH A 82 382 18 HOH HOH . H 5 HOH A 83 383 109 HOH HOH . H 5 HOH A 84 384 120 HOH HOH . H 5 HOH A 85 385 45 HOH HOH . H 5 HOH A 86 386 95 HOH HOH . H 5 HOH A 87 387 48 HOH HOH . H 5 HOH A 88 388 26 HOH HOH . H 5 HOH A 89 389 60 HOH HOH . H 5 HOH A 90 390 112 HOH HOH . H 5 HOH A 91 391 67 HOH HOH . H 5 HOH A 92 392 28 HOH HOH . H 5 HOH A 93 393 34 HOH HOH . H 5 HOH A 94 394 9 HOH HOH . H 5 HOH A 95 395 66 HOH HOH . H 5 HOH A 96 396 56 HOH HOH . H 5 HOH A 97 397 101 HOH HOH . H 5 HOH A 98 398 121 HOH HOH . H 5 HOH A 99 399 46 HOH HOH . H 5 HOH A 100 400 103 HOH HOH . H 5 HOH A 101 401 96 HOH HOH . H 5 HOH A 102 402 77 HOH HOH . H 5 HOH A 103 403 88 HOH HOH . H 5 HOH A 104 404 42 HOH HOH . H 5 HOH A 105 405 118 HOH HOH . H 5 HOH A 106 406 122 HOH HOH . H 5 HOH A 107 407 64 HOH HOH . H 5 HOH A 108 408 79 HOH HOH . H 5 HOH A 109 409 113 HOH HOH . H 5 HOH A 110 410 78 HOH HOH . H 5 HOH A 111 411 62 HOH HOH . H 5 HOH A 112 412 116 HOH HOH . H 5 HOH A 113 413 65 HOH HOH . H 5 HOH A 114 414 91 HOH HOH . H 5 HOH A 115 415 102 HOH HOH . H 5 HOH A 116 416 128 HOH HOH . H 5 HOH A 117 417 107 HOH HOH . H 5 HOH A 118 418 24 HOH HOH . H 5 HOH A 119 419 106 HOH HOH . H 5 HOH A 120 420 123 HOH HOH . H 5 HOH A 121 421 99 HOH HOH . H 5 HOH A 122 422 89 HOH HOH . H 5 HOH A 123 423 98 HOH HOH . H 5 HOH A 124 424 71 HOH HOH . H 5 HOH A 125 425 59 HOH HOH . H 5 HOH A 126 426 117 HOH HOH . H 5 HOH A 127 427 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 4.224 28.42 13.798 1 51.49 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 2 3.072 28.349 12.957 1 70.11 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 2 4.991 27.122 13.822 1 43.3 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 2 6.151 27.213 14.642 1 57.74 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 2 4.184 25.939 14.314 1 52.63 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 2 5.036 25.019 14.986 1 57.22 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #