data_8QYA
#
_model_server_result.job_id            JpLx4E2oyDsyMP3F6qj1uw 
_model_server_result.datetime_utc      '2024-10-19 12:31:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    8QYA 
#
_exptl.entry_id    8QYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.009 
_cell.angle_gamma         90 
_cell.entry_id            8QYA 
_cell.length_a            137.266 
_cell.length_b            55.371 
_cell.length_c            69.486 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    4 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   4 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
4 n D NAG 1 C 1 NAG C 224 NAG 
4 n D NAG 2 C 2 NAG C 225 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 142 H CYS 147 1_555 B SG CYS 198 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 C SG CYS 3 A CYS 8 1_555 C SG CYS 16 A CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 19 A CYS 24 1_555 C SG CYS 32 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 23 A CYS 28 1_555 C SG CYS 36 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 B ND2 ASN 54 H ASN 54 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale2 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 B OE2 GLU 1 H GLU 1 1_555 E CU CU . H CU 301 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
metalc ? metalc2 B NE2 HIS 166 H HIS 171 1_555 E CU CU . H CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
#
_chem_comp.formula           'Cu 2' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8QYA 
_atom_sites.fract_transf_matrix[1][1]    0.007285 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002368 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01806 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 CU H 1 301 1 CU CU . 
F 6 HOH L 1 301 3 HOH HOH . 
F 6 HOH L 2 302 76 HOH HOH . 
F 6 HOH L 3 303 18 HOH HOH . 
F 6 HOH L 4 304 47 HOH HOH . 
F 6 HOH L 5 305 15 HOH HOH . 
F 6 HOH L 6 306 80 HOH HOH . 
F 6 HOH L 7 307 4 HOH HOH . 
F 6 HOH L 8 308 68 HOH HOH . 
F 6 HOH L 9 309 63 HOH HOH . 
F 6 HOH L 10 310 75 HOH HOH . 
F 6 HOH L 11 311 1 HOH HOH . 
F 6 HOH L 12 312 25 HOH HOH . 
F 6 HOH L 13 313 41 HOH HOH . 
F 6 HOH L 14 314 29 HOH HOH . 
F 6 HOH L 15 315 83 HOH HOH . 
F 6 HOH L 16 316 24 HOH HOH . 
F 6 HOH L 17 317 85 HOH HOH . 
F 6 HOH L 18 318 28 HOH HOH . 
F 6 HOH L 19 319 67 HOH HOH . 
F 6 HOH L 20 320 30 HOH HOH . 
F 6 HOH L 21 321 14 HOH HOH . 
F 6 HOH L 22 322 7 HOH HOH . 
F 6 HOH L 23 323 71 HOH HOH . 
F 6 HOH L 24 324 86 HOH HOH . 
F 6 HOH L 25 325 48 HOH HOH . 
F 6 HOH L 26 326 79 HOH HOH . 
F 6 HOH L 27 327 61 HOH HOH . 
F 6 HOH L 28 328 2 HOH HOH . 
F 6 HOH L 29 329 43 HOH HOH . 
F 6 HOH L 30 330 13 HOH HOH . 
F 6 HOH L 31 331 60 HOH HOH . 
F 6 HOH L 32 332 70 HOH HOH . 
F 6 HOH L 33 333 16 HOH HOH . 
F 6 HOH L 34 334 58 HOH HOH . 
F 6 HOH L 35 335 84 HOH HOH . 
F 6 HOH L 36 336 59 HOH HOH . 
F 6 HOH L 37 337 26 HOH HOH . 
F 6 HOH L 38 338 8 HOH HOH . 
F 6 HOH L 39 339 82 HOH HOH . 
F 6 HOH L 40 340 77 HOH HOH . 
F 6 HOH L 41 341 78 HOH HOH . 
F 6 HOH L 42 342 64 HOH HOH . 
F 6 HOH L 43 343 62 HOH HOH . 
F 6 HOH L 44 344 66 HOH HOH . 
F 6 HOH L 45 345 27 HOH HOH . 
G 6 HOH H 1 401 6 HOH HOH . 
G 6 HOH H 2 402 20 HOH HOH . 
G 6 HOH H 3 403 36 HOH HOH . 
G 6 HOH H 4 404 57 HOH HOH . 
G 6 HOH H 5 405 11 HOH HOH . 
G 6 HOH H 6 406 45 HOH HOH . 
G 6 HOH H 7 407 17 HOH HOH . 
G 6 HOH H 8 408 37 HOH HOH . 
G 6 HOH H 9 409 46 HOH HOH . 
G 6 HOH H 10 410 49 HOH HOH . 
G 6 HOH H 11 411 5 HOH HOH . 
G 6 HOH H 12 412 74 HOH HOH . 
G 6 HOH H 13 413 52 HOH HOH . 
G 6 HOH H 14 414 69 HOH HOH . 
G 6 HOH H 15 415 32 HOH HOH . 
G 6 HOH H 16 416 35 HOH HOH . 
G 6 HOH H 17 417 34 HOH HOH . 
G 6 HOH H 18 418 33 HOH HOH . 
G 6 HOH H 19 419 81 HOH HOH . 
G 6 HOH H 20 420 73 HOH HOH . 
G 6 HOH H 21 421 38 HOH HOH . 
G 6 HOH H 22 422 50 HOH HOH . 
G 6 HOH H 23 423 40 HOH HOH . 
G 6 HOH H 24 424 23 HOH HOH . 
G 6 HOH H 25 425 53 HOH HOH . 
G 6 HOH H 26 426 55 HOH HOH . 
G 6 HOH H 27 427 72 HOH HOH . 
H 6 HOH A 1 101 105 HOH HOH . 
H 6 HOH A 2 102 9 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CU 
_atom_site.label_atom_id         CU 
_atom_site.label_comp_id         CU 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -18.403 
_atom_site.Cartn_y               21.976 
_atom_site.Cartn_z               47.308 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CU 
_atom_site.auth_comp_id          CU 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              88 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#