data_8QZ4 # _model_server_result.job_id 2iiOn_GvQFbfiOyXwDiU0Q _model_server_result.datetime_utc '2024-11-26 12:06:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 8QZ4 # _exptl.entry_id 8QZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QZ4 _cell.length_a 68.28 _cell.length_b 75.576 _cell.length_c 259.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 123 1_555 B SG CYS 58 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O THR 107 A THR 172 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc2 A O ILE 108 A ILE 173 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc3 A O GLY 109 A GLY 174 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc4 A O TYR 110 A TYR 175 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc5 A O THR 216 A THR 281 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc6 A O VAL 217 A VAL 282 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc7 A O GLY 218 A GLY 283 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc8 A O PHE 219 A PHE 284 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.273 ? metalc ? metalc9 E BA BA . A BA 401 1_555 B O GLY 109 B GLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc10 E BA BA . A BA 401 1_555 B O TYR 110 B TYR 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc11 E BA BA . A BA 401 1_555 B O GLY 218 B GLY 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc12 E BA BA . A BA 401 1_555 B O PHE 219 B PHE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc13 F BA BA . A BA 402 1_555 B O THR 107 B THR 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc14 F BA BA . A BA 402 1_555 B O ILE 108 B ILE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc15 F BA BA . A BA 402 1_555 B O THR 216 B THR 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc16 F BA BA . A BA 402 1_555 B O VAL 217 B VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc17 B O LYS 164 B LYS 229 1_555 K BA BA . B BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc18 B OE1 GLN 165 B GLN 230 1_555 K BA BA . B BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 376 n n CBA CAB Y01 sing 377 n n CBA CAN Y01 sing 378 n n CAN CAJ Y01 sing 379 n n CAJ CAO Y01 sing 380 n n CAO CBB Y01 sing 381 n n CBB CAC Y01 sing 382 n n CBB CBE Y01 sing 383 n n CBE CAP Y01 sing 384 n n CBE CBI Y01 sing 385 n n CAP CAQ Y01 sing 386 n n CAQ CBG Y01 sing 387 n n CBG CBI Y01 sing 388 n n CBG CBD Y01 sing 389 n n CBI CAE Y01 sing 390 n n CBI CAU Y01 sing 391 n n CAU CAS Y01 sing 392 n n CAS CBF Y01 sing 393 n n CBF CBD Y01 sing 394 n n CBF CBH Y01 sing 395 n n CBD CAK Y01 sing 396 n n CAK CAI Y01 sing 397 n n CAI CAZ Y01 doub 398 n n CAZ CAV Y01 sing 399 n n CAZ CBH Y01 sing 400 n n CAV CBC Y01 sing 401 n n CBH CAD Y01 sing 402 n n CBH CAT Y01 sing 403 n n CAT CAR Y01 sing 404 n n CAR CBC Y01 sing 405 n n CBC OAW Y01 sing 406 n n OAW CAY Y01 sing 407 n n CAY OAG Y01 doub 408 n n CAY CAM Y01 sing 409 n n CAM CAL Y01 sing 410 n n CAL CAX Y01 sing 411 n n CAX OAH Y01 sing 412 n n CAX OAF Y01 doub 413 n n CAA HAA1 Y01 sing 414 n n CAA HAA2 Y01 sing 415 n n CAA HAA3 Y01 sing 416 n n CBA HBA Y01 sing 417 n n CAB HAB1 Y01 sing 418 n n CAB HAB2 Y01 sing 419 n n CAB HAB3 Y01 sing 420 n n CAN HAN1 Y01 sing 421 n n CAN HAN2 Y01 sing 422 n n CAJ HAJ1 Y01 sing 423 n n CAJ HAJ2 Y01 sing 424 n n CAO HAO1 Y01 sing 425 n n CAO HAO2 Y01 sing 426 n n CBB HBB Y01 sing 427 n n CAC HAC1 Y01 sing 428 n n CAC HAC2 Y01 sing 429 n n CAC HAC3 Y01 sing 430 n n CBE HBE Y01 sing 431 n n CAP HAP1 Y01 sing 432 n n CAP HAP2 Y01 sing 433 n n CAQ HAQ1 Y01 sing 434 n n CAQ HAQ2 Y01 sing 435 n n CBG HBG Y01 sing 436 n n CBD HBD Y01 sing 437 n n CAE HAE1 Y01 sing 438 n n CAE HAE2 Y01 sing 439 n n CAE HAE3 Y01 sing 440 n n CAU HAU1 Y01 sing 441 n n CAU HAU2 Y01 sing 442 n n CAS HAS1 Y01 sing 443 n n CAS HAS2 Y01 sing 444 n n CBF HBF Y01 sing 445 n n CAK HAK1 Y01 sing 446 n n CAK HAK2 Y01 sing 447 n n CAI HAI Y01 sing 448 n n CAV HAV1 Y01 sing 449 n n CAV HAV2 Y01 sing 450 n n CBC HBC Y01 sing 451 n n CAD HAD1 Y01 sing 452 n n CAD HAD2 Y01 sing 453 n n CAD HAD3 Y01 sing 454 n n CAT HAT1 Y01 sing 455 n n CAT HAT2 Y01 sing 456 n n CAR HAR1 Y01 sing 457 n n CAR HAR2 Y01 sing 458 n n CAM HAM1 Y01 sing 459 n n CAM HAM2 Y01 sing 460 n n CAL HAL1 Y01 sing 461 n n CAL HAL2 Y01 sing 462 n n OAH HAH Y01 sing 463 n n # _atom_sites.entry_id 8QZ4 _atom_sites.fract_transf_matrix[1][1] 0.014646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BA A 1 401 402 BA BA . F 3 BA A 1 402 403 BA BA . G 4 Y01 A 1 403 501 Y01 Y01 . H 4 Y01 A 1 404 502 Y01 Y01 . I 4 Y01 A 1 405 502 Y01 Y01 . J 3 BA B 1 401 401 BA BA . K 3 BA B 1 402 401 BA BA . L 4 Y01 B 1 403 501 Y01 Y01 . M 5 HOH A 1 501 1 HOH HOH . M 5 HOH A 2 502 5 HOH HOH . M 5 HOH A 3 503 4 HOH HOH . N 5 HOH B 1 501 8 HOH HOH . N 5 HOH B 2 502 2 HOH HOH . N 5 HOH B 3 503 3 HOH HOH . N 5 HOH B 4 504 6 HOH HOH . O 5 HOH C 1 201 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . H 4 19.239 -14.489 289.493 1 122.77 ? CAA Y01 404 A 1 HETATM 2 C CBA Y01 . . . H 4 20.297 -15.554 289.284 1 122.78 ? CBA Y01 404 A 1 HETATM 3 C CAB Y01 . . . H 4 21.576 -15.197 290.015 1 122.77 ? CAB Y01 404 A 1 HETATM 4 C CAN Y01 . . . H 4 19.813 -16.937 289.663 1 122.85 ? CAN Y01 404 A 1 HETATM 5 C CAJ Y01 . . . H 4 19.355 -17.131 291.1 1 122.93 ? CAJ Y01 404 A 1 HETATM 6 C CAO Y01 . . . H 4 19.303 -18.597 291.507 1 123.03 ? CAO Y01 404 A 1 HETATM 7 C CBB Y01 . . . H 4 18.825 -18.868 292.946 1 123.15 ? CBB Y01 404 A 1 HETATM 8 C CAC Y01 . . . H 4 17.478 -19.586 292.915 1 123.09 ? CAC Y01 404 A 1 HETATM 9 C CBE Y01 . . . H 4 19.914 -19.611 293.752 1 123.33 ? CBE Y01 404 A 1 HETATM 10 C CAP Y01 . . . H 4 21.254 -18.84 293.769 1 123.38 ? CAP Y01 404 A 1 HETATM 11 C CAQ Y01 . . . H 4 21.982 -19.246 295.06 1 123.43 ? CAQ Y01 404 A 1 HETATM 12 C CBG Y01 . . . H 4 21.118 -20.373 295.639 1 123.55 ? CBG Y01 404 A 1 HETATM 13 C CBI Y01 . . . H 4 19.676 -19.978 295.24 1 123.48 ? CBI Y01 404 A 1 HETATM 14 C CAE Y01 . . . H 4 19.156 -18.772 296.05 1 123.48 ? CAE Y01 404 A 1 HETATM 15 C CAU Y01 . . . H 4 18.802 -21.218 295.512 1 123.6 ? CAU Y01 404 A 1 HETATM 16 C CAS Y01 . . . H 4 18.907 -21.724 296.955 1 123.7 ? CAS Y01 404 A 1 HETATM 17 C CBF Y01 . . . H 4 20.355 -21.966 297.423 1 123.82 ? CBF Y01 404 A 1 HETATM 18 C CBD Y01 . . . H 4 21.284 -20.774 297.113 1 123.74 ? CBD Y01 404 A 1 HETATM 19 C CAK Y01 . . . H 4 22.733 -21.158 297.404 1 123.83 ? CAK Y01 404 A 1 HETATM 20 C CAI Y01 . . . H 4 22.891 -21.898 298.696 1 123.91 ? CAI Y01 404 A 1 HETATM 21 C CAZ Y01 . . . H 4 21.903 -22.481 299.364 1 124 ? CAZ Y01 404 A 1 HETATM 22 C CAV Y01 . . . H 4 22.183 -23.207 300.662 1 124.18 ? CAV Y01 404 A 1 HETATM 23 C CBH Y01 . . . H 4 20.44 -22.416 298.916 1 123.96 ? CBH Y01 404 A 1 HETATM 24 C CAD Y01 . . . H 4 19.7 -21.436 299.852 1 123.96 ? CAD Y01 404 A 1 HETATM 25 C CAT Y01 . . . H 4 19.807 -23.816 299.041 1 124.11 ? CAT Y01 404 A 1 HETATM 26 C CAR Y01 . . . H 4 20.053 -24.478 300.401 1 124.26 ? CAR Y01 404 A 1 HETATM 27 C CBC Y01 . . . H 4 21.536 -24.577 300.683 1 124.39 ? CBC Y01 404 A 1 HETATM 28 O OAW Y01 . . . H 4 21.739 -25.128 302.023 1 124.72 ? OAW Y01 404 A 1 HETATM 29 C CAY Y01 . . . H 4 22.835 -25.88 302.237 1 125.01 ? CAY Y01 404 A 1 HETATM 30 O OAG Y01 . . . H 4 23.532 -26.314 301.359 1 125.04 ? OAG Y01 404 A 1 HETATM 31 C CAM Y01 . . . H 4 23.08 -26.076 303.704 1 125.2 ? CAM Y01 404 A 1 HETATM 32 C CAL Y01 . . . H 4 24.378 -25.445 304.187 1 125.31 ? CAL Y01 404 A 1 HETATM 33 C CAX Y01 . . . H 4 24.451 -23.961 303.969 1 125.35 ? CAX Y01 404 A 1 HETATM 34 O OAH Y01 . . . H 4 23.778 -23.27 304.853 1 125.36 ? OAH Y01 404 A 1 HETATM 35 O OAF Y01 . . . H 4 25.083 -23.451 303.063 1 125.32 ? OAF Y01 404 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 699 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #