data_8QZ4 # _model_server_result.job_id wYdIKsiedSlm7KipcTgUhw _model_server_result.datetime_utc '2024-11-22 23:39:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":405}' # _entry.id 8QZ4 # _exptl.entry_id 8QZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QZ4 _cell.length_a 68.28 _cell.length_b 75.576 _cell.length_c 259.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 123 1_555 B SG CYS 58 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O THR 107 A THR 172 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc2 A O ILE 108 A ILE 173 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc3 A O GLY 109 A GLY 174 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc4 A O TYR 110 A TYR 175 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc5 A O THR 216 A THR 281 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc6 A O VAL 217 A VAL 282 1_555 F BA BA . A BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc7 A O GLY 218 A GLY 283 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc8 A O PHE 219 A PHE 284 1_555 E BA BA . A BA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.273 ? metalc ? metalc9 E BA BA . A BA 401 1_555 B O GLY 109 B GLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc10 E BA BA . A BA 401 1_555 B O TYR 110 B TYR 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc11 E BA BA . A BA 401 1_555 B O GLY 218 B GLY 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc12 E BA BA . A BA 401 1_555 B O PHE 219 B PHE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc13 F BA BA . A BA 402 1_555 B O THR 107 B THR 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc14 F BA BA . A BA 402 1_555 B O ILE 108 B ILE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc15 F BA BA . A BA 402 1_555 B O THR 216 B THR 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc16 F BA BA . A BA 402 1_555 B O VAL 217 B VAL 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc17 B O LYS 164 B LYS 229 1_555 K BA BA . B BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc18 B OE1 GLN 165 B GLN 230 1_555 K BA BA . B BA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 376 n n CBA CAB Y01 sing 377 n n CBA CAN Y01 sing 378 n n CAN CAJ Y01 sing 379 n n CAJ CAO Y01 sing 380 n n CAO CBB Y01 sing 381 n n CBB CAC Y01 sing 382 n n CBB CBE Y01 sing 383 n n CBE CAP Y01 sing 384 n n CBE CBI Y01 sing 385 n n CAP CAQ Y01 sing 386 n n CAQ CBG Y01 sing 387 n n CBG CBI Y01 sing 388 n n CBG CBD Y01 sing 389 n n CBI CAE Y01 sing 390 n n CBI CAU Y01 sing 391 n n CAU CAS Y01 sing 392 n n CAS CBF Y01 sing 393 n n CBF CBD Y01 sing 394 n n CBF CBH Y01 sing 395 n n CBD CAK Y01 sing 396 n n CAK CAI Y01 sing 397 n n CAI CAZ Y01 doub 398 n n CAZ CAV Y01 sing 399 n n CAZ CBH Y01 sing 400 n n CAV CBC Y01 sing 401 n n CBH CAD Y01 sing 402 n n CBH CAT Y01 sing 403 n n CAT CAR Y01 sing 404 n n CAR CBC Y01 sing 405 n n CBC OAW Y01 sing 406 n n OAW CAY Y01 sing 407 n n CAY OAG Y01 doub 408 n n CAY CAM Y01 sing 409 n n CAM CAL Y01 sing 410 n n CAL CAX Y01 sing 411 n n CAX OAH Y01 sing 412 n n CAX OAF Y01 doub 413 n n CAA HAA1 Y01 sing 414 n n CAA HAA2 Y01 sing 415 n n CAA HAA3 Y01 sing 416 n n CBA HBA Y01 sing 417 n n CAB HAB1 Y01 sing 418 n n CAB HAB2 Y01 sing 419 n n CAB HAB3 Y01 sing 420 n n CAN HAN1 Y01 sing 421 n n CAN HAN2 Y01 sing 422 n n CAJ HAJ1 Y01 sing 423 n n CAJ HAJ2 Y01 sing 424 n n CAO HAO1 Y01 sing 425 n n CAO HAO2 Y01 sing 426 n n CBB HBB Y01 sing 427 n n CAC HAC1 Y01 sing 428 n n CAC HAC2 Y01 sing 429 n n CAC HAC3 Y01 sing 430 n n CBE HBE Y01 sing 431 n n CAP HAP1 Y01 sing 432 n n CAP HAP2 Y01 sing 433 n n CAQ HAQ1 Y01 sing 434 n n CAQ HAQ2 Y01 sing 435 n n CBG HBG Y01 sing 436 n n CBD HBD Y01 sing 437 n n CAE HAE1 Y01 sing 438 n n CAE HAE2 Y01 sing 439 n n CAE HAE3 Y01 sing 440 n n CAU HAU1 Y01 sing 441 n n CAU HAU2 Y01 sing 442 n n CAS HAS1 Y01 sing 443 n n CAS HAS2 Y01 sing 444 n n CBF HBF Y01 sing 445 n n CAK HAK1 Y01 sing 446 n n CAK HAK2 Y01 sing 447 n n CAI HAI Y01 sing 448 n n CAV HAV1 Y01 sing 449 n n CAV HAV2 Y01 sing 450 n n CBC HBC Y01 sing 451 n n CAD HAD1 Y01 sing 452 n n CAD HAD2 Y01 sing 453 n n CAD HAD3 Y01 sing 454 n n CAT HAT1 Y01 sing 455 n n CAT HAT2 Y01 sing 456 n n CAR HAR1 Y01 sing 457 n n CAR HAR2 Y01 sing 458 n n CAM HAM1 Y01 sing 459 n n CAM HAM2 Y01 sing 460 n n CAL HAL1 Y01 sing 461 n n CAL HAL2 Y01 sing 462 n n OAH HAH Y01 sing 463 n n # _atom_sites.entry_id 8QZ4 _atom_sites.fract_transf_matrix[1][1] 0.014646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BA A 1 401 402 BA BA . F 3 BA A 1 402 403 BA BA . G 4 Y01 A 1 403 501 Y01 Y01 . H 4 Y01 A 1 404 502 Y01 Y01 . I 4 Y01 A 1 405 502 Y01 Y01 . J 3 BA B 1 401 401 BA BA . K 3 BA B 1 402 401 BA BA . L 4 Y01 B 1 403 501 Y01 Y01 . M 5 HOH A 1 501 1 HOH HOH . M 5 HOH A 2 502 5 HOH HOH . M 5 HOH A 3 503 4 HOH HOH . N 5 HOH B 1 501 8 HOH HOH . N 5 HOH B 2 502 2 HOH HOH . N 5 HOH B 3 503 3 HOH HOH . N 5 HOH B 4 504 6 HOH HOH . O 5 HOH C 1 201 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 4 13.719 14.357 313.066 1 118.22 ? CAA Y01 405 A 1 HETATM 2 C CBA Y01 . . . I 4 12.577 15.242 313.493 1 118.23 ? CBA Y01 405 A 1 HETATM 3 C CAB Y01 . . . I 4 11.457 15.194 312.478 1 118.22 ? CAB Y01 405 A 1 HETATM 4 C CAN Y01 . . . I 4 12.094 14.914 314.882 1 118.32 ? CAN Y01 405 A 1 HETATM 5 C CAJ Y01 . . . I 4 11.575 13.503 315.125 1 118.46 ? CAJ Y01 405 A 1 HETATM 6 C CAO Y01 . . . I 4 10.703 13.418 316.368 1 118.67 ? CAO Y01 405 A 1 HETATM 7 C CBB Y01 . . . I 4 10.159 12.019 316.707 1 118.93 ? CBB Y01 405 A 1 HETATM 8 C CAC Y01 . . . I 4 10.781 11.533 318.014 1 118.89 ? CAC Y01 405 A 1 HETATM 9 C CBE Y01 . . . I 4 8.615 12.033 316.719 1 119.31 ? CBE Y01 405 A 1 HETATM 10 C CAP Y01 . . . I 4 8.027 12.511 315.373 1 119.45 ? CAP Y01 405 A 1 HETATM 11 C CAQ Y01 . . . I 4 6.637 11.867 315.242 1 119.59 ? CAQ Y01 405 A 1 HETATM 12 C CBG Y01 . . . I 4 6.407 11.199 316.604 1 119.76 ? CBG Y01 405 A 1 HETATM 13 C CBI Y01 . . . I 4 7.82 10.74 317.036 1 119.61 ? CBI Y01 405 A 1 HETATM 14 C CAE Y01 . . . I 4 8.325 9.549 316.198 1 119.52 ? CAE Y01 405 A 1 HETATM 15 C CAU Y01 . . . I 4 7.709 10.343 318.521 1 119.83 ? CAU Y01 405 A 1 HETATM 16 C CAS Y01 . . . I 4 6.625 9.291 318.789 1 120.03 ? CAS Y01 405 A 1 HETATM 17 C CBF Y01 . . . I 4 5.243 9.658 318.216 1 120.21 ? CBF Y01 405 A 1 HETATM 18 C CBD Y01 . . . I 4 5.317 10.126 316.747 1 120.1 ? CBD Y01 405 A 1 HETATM 19 C CAK Y01 . . . I 4 3.961 10.679 316.314 1 120.3 ? CAK Y01 405 A 1 HETATM 20 C CAI Y01 . . . I 4 2.817 9.818 316.752 1 120.5 ? CAI Y01 405 A 1 HETATM 21 C CAZ Y01 . . . I 4 2.884 8.889 317.698 1 120.65 ? CAZ Y01 405 A 1 HETATM 22 C CAV Y01 . . . I 4 1.657 8.08 318.061 1 120.94 ? CAV Y01 405 A 1 HETATM 23 C CBH Y01 . . . I 4 4.182 8.532 318.428 1 120.5 ? CBH Y01 405 A 1 HETATM 24 C CAD Y01 . . . I 4 4.673 7.174 317.883 1 120.48 ? CAD Y01 405 A 1 HETATM 25 C CAT Y01 . . . I 4 3.898 8.399 319.939 1 120.7 ? CAT Y01 405 A 1 HETATM 26 C CAR Y01 . . . I 4 2.697 7.503 320.256 1 120.94 ? CAR Y01 405 A 1 HETATM 27 C CBC Y01 . . . I 4 1.456 8.019 319.563 1 121.2 ? CBC Y01 405 A 1 HETATM 28 O OAW Y01 . . . I 4 0.343 7.101 319.813 1 121.64 ? OAW Y01 405 A 1 HETATM 29 C CAY Y01 . . . I 4 -0.897 7.618 319.889 1 121.95 ? CAY Y01 405 A 1 HETATM 30 O OAG Y01 . . . I 4 -1.129 8.793 319.993 1 122 ? OAG Y01 405 A 1 HETATM 31 C CAM Y01 . . . I 4 -1.94 6.544 319.795 1 122.14 ? CAM Y01 405 A 1 HETATM 32 C CAL Y01 . . . I 4 -2.811 6.663 318.552 1 122.28 ? CAL Y01 405 A 1 HETATM 33 C CAX Y01 . . . I 4 -2.044 6.587 317.262 1 122.35 ? CAX Y01 405 A 1 HETATM 34 O OAH Y01 . . . I 4 -1.707 5.368 316.933 1 122.36 ? OAH Y01 405 A 1 HETATM 35 O OAF Y01 . . . I 4 -1.771 7.564 316.587 1 122.37 ? OAF Y01 405 A 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 35 #