data_8QZ7 # _model_server_result.job_id nK87Q-Za8PQ_plHzwwO4Aw _model_server_result.datetime_utc '2024-11-17 03:00:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8QZ7 # _exptl.entry_id 8QZ7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 960.239 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-[2-[(5~{R},6~{R},7~{S},9~{S},11~{R},16~{R},18~{S},19~{S})-6-[(3~{R})-3-carboxy-5-oxidanyl-5-oxidanylidene-pentanoyl]oxy-19-(hexadecanoylamino)-5,9-dimethyl-11,16,18-tris(oxidanyl)icosan-7-yl]oxy-2-oxidanylidene-ethyl]butanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QZ7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 22 D CYS 22 1_555 C SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 18 A ASN 18 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 D ND2 ASN 18 C ASN 18 1_555 J C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C50 H89 N O16' _chem_comp.formula_weight 960.239 _chem_comp.id XBX _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-[2-[(5~{R},6~{R},7~{S},9~{S},11~{R},16~{R},18~{S},19~{S})-6-[(3~{R})-3-carboxy-5-oxidanyl-5-oxidanylidene-pentanoyl]oxy-19-(hexadecanoylamino)-5,9-dimethyl-11,16,18-tris(oxidanyl)icosan-7-yl]oxy-2-oxidanylidene-ethyl]butanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XBX sing 545 n n C2 C3 XBX sing 546 n n C3 C4 XBX sing 547 n n C4 C5 XBX sing 548 n n C5 C6 XBX sing 549 n n C6 C7 XBX sing 550 n n C7 C8 XBX sing 551 n n C8 C9 XBX sing 552 n n C9 C10 XBX sing 553 n n C10 C11 XBX sing 554 n n C11 C12 XBX sing 555 n n C12 C13 XBX sing 556 n n C13 C14 XBX sing 557 n n C14 C15 XBX sing 558 n n C15 C16 XBX sing 559 n n C16 N1 XBX sing 560 n n N1 C17 XBX sing 561 n n C17 C18 XBX sing 562 n n C17 C19 XBX sing 563 n n C19 O1 XBX sing 564 n n C19 C20 XBX sing 565 n n C20 C21 XBX sing 566 n n C21 O2 XBX sing 567 n n C21 C22 XBX sing 568 n n C22 C23 XBX sing 569 n n C23 C24 XBX sing 570 n n C24 C25 XBX sing 571 n n C25 C26 XBX sing 572 n n C26 O3 XBX sing 573 n n C26 C27 XBX sing 574 n n C27 C28 XBX sing 575 n n C28 C29 XBX sing 576 n n C28 C30 XBX sing 577 n n C30 C31 XBX sing 578 n n C31 C32 XBX sing 579 n n C32 C33 XBX sing 580 n n C33 C34 XBX sing 581 n n C34 C35 XBX sing 582 n n C35 C36 XBX sing 583 n n C36 C37 XBX sing 584 n n C33 C38 XBX sing 585 n n C32 O4 XBX sing 586 n n O4 C39 XBX sing 587 n n C39 C40 XBX sing 588 n n C40 C41 XBX sing 589 n n C41 C42 XBX sing 590 n n C42 O5 XBX sing 591 n n C42 O6 XBX doub 592 n n C41 C43 XBX sing 593 n n C43 C44 XBX sing 594 n n C44 O7 XBX sing 595 n n C44 O8 XBX doub 596 n n C39 O9 XBX doub 597 n n C31 O10 XBX sing 598 n n O10 C45 XBX sing 599 n n C45 C46 XBX sing 600 n n C46 C47 XBX sing 601 n n C47 C48 XBX sing 602 n n C48 O11 XBX sing 603 n n C48 O12 XBX doub 604 n n C47 C49 XBX sing 605 n n C49 C50 XBX sing 606 n n C50 O13 XBX sing 607 n n C50 O14 XBX doub 608 n n C45 O15 XBX doub 609 n n C16 O16 XBX doub 610 n n N1 H32 XBX sing 611 n n C4 H9 XBX sing 612 n n C4 H8 XBX sing 613 n n C5 H10 XBX sing 614 n n C5 H11 XBX sing 615 n n C6 H13 XBX sing 616 n n C6 H12 XBX sing 617 n n C7 H14 XBX sing 618 n n C7 H15 XBX sing 619 n n C8 H17 XBX sing 620 n n C8 H16 XBX sing 621 n n C10 H20 XBX sing 622 n n C10 H21 XBX sing 623 n n C13 H27 XBX sing 624 n n C13 H26 XBX sing 625 n n C15 H31 XBX sing 626 n n C15 H30 XBX sing 627 n n C17 H33 XBX sing 628 n n C20 H40 XBX sing 629 n n C20 H39 XBX sing 630 n n C21 H41 XBX sing 631 n n C22 H44 XBX sing 632 n n C22 H43 XBX sing 633 n n C24 H48 XBX sing 634 n n C24 H47 XBX sing 635 n n C26 H51 XBX sing 636 n n C28 H55 XBX sing 637 n n C1 H3 XBX sing 638 n n C1 H2 XBX sing 639 n n C1 H1 XBX sing 640 n n C11 H23 XBX sing 641 n n C11 H22 XBX sing 642 n n C12 H24 XBX sing 643 n n C12 H25 XBX sing 644 n n C14 H28 XBX sing 645 n n C14 H29 XBX sing 646 n n C18 H34 XBX sing 647 n n C18 H35 XBX sing 648 n n C18 H36 XBX sing 649 n n C19 H37 XBX sing 650 n n C2 H5 XBX sing 651 n n C2 H4 XBX sing 652 n n C23 H45 XBX sing 653 n n C23 H46 XBX sing 654 n n C25 H49 XBX sing 655 n n C25 H50 XBX sing 656 n n C27 H53 XBX sing 657 n n C27 H54 XBX sing 658 n n C29 H56 XBX sing 659 n n C29 H58 XBX sing 660 n n C29 H57 XBX sing 661 n n C3 H6 XBX sing 662 n n C3 H7 XBX sing 663 n n C30 H60 XBX sing 664 n n C30 H59 XBX sing 665 n n C31 H61 XBX sing 666 n n C32 H62 XBX sing 667 n n C33 H63 XBX sing 668 n n C34 H64 XBX sing 669 n n C34 H65 XBX sing 670 n n C35 H66 XBX sing 671 n n C35 H67 XBX sing 672 n n C36 H69 XBX sing 673 n n C36 H68 XBX sing 674 n n C37 H71 XBX sing 675 n n C37 H72 XBX sing 676 n n C37 H70 XBX sing 677 n n C38 H74 XBX sing 678 n n C38 H73 XBX sing 679 n n C38 H75 XBX sing 680 n n C40 H77 XBX sing 681 n n C40 H76 XBX sing 682 n n C41 H78 XBX sing 683 n n C43 H79 XBX sing 684 n n C43 H80 XBX sing 685 n n C46 H81 XBX sing 686 n n C46 H82 XBX sing 687 n n C47 H83 XBX sing 688 n n C49 H85 XBX sing 689 n n C49 H84 XBX sing 690 n n C9 H18 XBX sing 691 n n C9 H19 XBX sing 692 n n O1 H38 XBX sing 693 n n O11 H86 XBX sing 694 n n O13 H87 XBX sing 695 n n O2 H42 XBX sing 696 n n O3 H52 XBX sing 697 n n O5 H88 XBX sing 698 n n O7 H89 XBX sing 699 n n # _atom_sites.entry_id 8QZ7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 XBX A 1 401 401 XBX LIG . F 4 PC1 A 1 402 402 PC1 PC1 . G 5 NAG A 1 403 403 NAG NAG . H 3 XBX C 1 401 401 XBX LIG . I 4 PC1 C 1 402 402 PC1 PC1 . J 5 NAG C 1 403 403 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XBX . . . E 3 128.425 100.059 132.974 1 64.89 ? N1 XBX 401 A 1 HETATM 2 C C4 XBX . . . E 3 134.266 100.041 119.983 1 54.07 ? C4 XBX 401 A 1 HETATM 3 C C5 XBX . . . E 3 132.77 100.127 120.143 1 46.69 ? C5 XBX 401 A 1 HETATM 4 C C6 XBX . . . E 3 132.312 100.414 121.549 1 54.03 ? C6 XBX 401 A 1 HETATM 5 C C7 XBX . . . E 3 130.816 100.428 121.715 1 55.52 ? C7 XBX 401 A 1 HETATM 6 C C8 XBX . . . E 3 130.341 100.773 123.103 1 56.43 ? C8 XBX 401 A 1 HETATM 7 C C10 XBX . . . E 3 128.344 101.248 124.591 1 55.14 ? C10 XBX 401 A 1 HETATM 8 C C13 XBX . . . E 3 128.58 99.9 128.218 1 60.47 ? C13 XBX 401 A 1 HETATM 9 C C15 XBX . . . E 3 128.315 99.346 130.662 1 54.22 ? C15 XBX 401 A 1 HETATM 10 C C17 XBX . . . E 3 127.98 100.705 134.213 1 62.77 ? C17 XBX 401 A 1 HETATM 11 C C20 XBX . . . E 3 128.263 98.97 136.105 1 64.13 ? C20 XBX 401 A 1 HETATM 12 C C21 XBX . . . E 3 127.569 98.113 137.143 1 63.49 ? C21 XBX 401 A 1 HETATM 13 C C22 XBX . . . E 3 128.477 97.69 138.281 1 58.34 ? C22 XBX 401 A 1 HETATM 14 C C24 XBX . . . E 3 128.595 96.794 140.663 1 65.16 ? C24 XBX 401 A 1 HETATM 15 C C26 XBX . . . E 3 128.543 96.163 143.142 1 61.97 ? C26 XBX 401 A 1 HETATM 16 C C28 XBX . . . E 3 128.474 95.572 145.576 1 65.22 ? C28 XBX 401 A 1 HETATM 17 C C1 XBX . . . E 3 136.678 99.449 117.002 1 56.31 ? C1 XBX 401 A 1 HETATM 18 C C11 XBX . . . E 3 128.789 100.393 125.746 1 55.3 ? C11 XBX 401 A 1 HETATM 19 C C12 XBX . . . E 3 128.178 100.783 127.068 1 54.1 ? C12 XBX 401 A 1 HETATM 20 C C14 XBX . . . E 3 127.879 100.221 129.531 1 55.89 ? C14 XBX 401 A 1 HETATM 21 C C16 XBX . . . E 3 127.624 99.679 131.966 1 63.25 ? C16 XBX 401 A 1 HETATM 22 C C18 XBX . . . E 3 127.102 101.901 133.909 1 60.55 ? C18 XBX 401 A 1 HETATM 23 C C19 XBX . . . E 3 127.318 99.703 135.167 1 65.92 ? C19 XBX 401 A 1 HETATM 24 C C2 XBX . . . E 3 136.216 99.647 118.424 1 57.18 ? C2 XBX 401 A 1 HETATM 25 C C23 XBX . . . E 3 127.787 96.952 139.399 1 58.08 ? C23 XBX 401 A 1 HETATM 26 C C25 XBX . . . E 3 127.839 96.157 141.801 1 65.63 ? C25 XBX 401 A 1 HETATM 27 C C27 XBX . . . E 3 127.721 95.535 144.249 1 60.57 ? C27 XBX 401 A 1 HETATM 28 C C29 XBX . . . E 3 129.794 94.826 145.48 1 66.26 ? C29 XBX 401 A 1 HETATM 29 C C3 XBX . . . E 3 134.724 99.769 118.574 1 60.07 ? C3 XBX 401 A 1 HETATM 30 C C30 XBX . . . E 3 127.622 95.041 146.727 1 63.18 ? C30 XBX 401 A 1 HETATM 31 C C31 XBX . . . E 3 126.384 95.849 147.078 1 65.25 ? C31 XBX 401 A 1 HETATM 32 C C32 XBX . . . E 3 125.603 95.333 148.285 1 66.11 ? C32 XBX 401 A 1 HETATM 33 C C33 XBX . . . E 3 124.909 93.995 147.979 1 67.88 ? C33 XBX 401 A 1 HETATM 34 C C34 XBX . . . E 3 123.873 93.582 149.044 1 67 ? C34 XBX 401 A 1 HETATM 35 C C35 XBX . . . E 3 123.487 92.125 149.058 1 65.2 ? C35 XBX 401 A 1 HETATM 36 C C36 XBX . . . E 3 124.626 91.232 149.477 1 67.2 ? C36 XBX 401 A 1 HETATM 37 C C37 XBX . . . E 3 124.247 89.777 149.616 1 64.97 ? C37 XBX 401 A 1 HETATM 38 C C38 XBX . . . E 3 124.277 93.997 146.595 1 65.8 ? C38 XBX 401 A 1 HETATM 39 C C39 XBX . . . E 3 126.266 95.09 150.585 1 68.78 ? C39 XBX 401 A 1 HETATM 40 C C40 XBX . . . E 3 127.261 94.38 151.447 1 64.01 ? C40 XBX 401 A 1 HETATM 41 C C41 XBX . . . E 3 127.835 95.197 152.607 1 65.34 ? C41 XBX 401 A 1 HETATM 42 C C42 XBX . . . E 3 129.021 94.47 153.252 1 74.23 ? C42 XBX 401 A 1 HETATM 43 C C43 XBX . . . E 3 126.769 95.575 153.638 1 64.86 ? C43 XBX 401 A 1 HETATM 44 C C44 XBX . . . E 3 125.861 94.423 154.038 1 72.68 ? C44 XBX 401 A 1 HETATM 45 C C45 XBX . . . E 3 125.929 98.173 147.481 1 70.81 ? C45 XBX 401 A 1 HETATM 46 C C46 XBX . . . E 3 126.496 99.415 148.093 1 66.81 ? C46 XBX 401 A 1 HETATM 47 C C47 XBX . . . E 3 125.513 100.583 148.211 1 69.23 ? C47 XBX 401 A 1 HETATM 48 C C48 XBX . . . E 3 126.236 101.843 148.7 1 73.76 ? C48 XBX 401 A 1 HETATM 49 C C49 XBX . . . E 3 124.343 100.254 149.14 1 71.05 ? C49 XBX 401 A 1 HETATM 50 C C50 XBX . . . E 3 123.297 101.354 149.202 1 76.35 ? C50 XBX 401 A 1 HETATM 51 C C9 XBX . . . E 3 128.843 100.793 123.246 1 51.13 ? C9 XBX 401 A 1 HETATM 52 O O1 XBX . . . E 3 126.523 98.773 134.436 1 66.08 ? O1 XBX 401 A 1 HETATM 53 O O10 XBX . . . E 3 126.837 97.186 147.422 1 71.41 ? O10 XBX 401 A 1 HETATM 54 O O11 XBX . . . E 3 126.793 101.804 149.814 1 68.58 ? O11 XBX 401 A 1 HETATM 55 O O12 XBX . . . E 3 126.232 102.846 147.959 1 71.21 ? O12 XBX 401 A 1 HETATM 56 O O13 XBX . . . E 3 123.061 101.88 150.308 1 73.09 ? O13 XBX 401 A 1 HETATM 57 O O14 XBX . . . E 3 122.723 101.679 148.144 1 72.51 ? O14 XBX 401 A 1 HETATM 58 O O15 XBX . . . E 3 124.808 98.067 147.059 1 72.77 ? O15 XBX 401 A 1 HETATM 59 O O16 XBX . . . E 3 126.406 99.578 132.092 1 74.48 ? O16 XBX 401 A 1 HETATM 60 O O2 XBX . . . E 3 126.483 98.856 137.681 1 63.91 ? O2 XBX 401 A 1 HETATM 61 O O3 XBX . . . E 3 128.856 97.5 143.513 1 62.98 ? O3 XBX 401 A 1 HETATM 62 O O4 XBX . . . E 3 126.621 95.069 149.291 1 70.72 ? O4 XBX 401 A 1 HETATM 63 O O5 XBX . . . E 3 128.858 93.292 153.626 1 69.5 ? O5 XBX 401 A 1 HETATM 64 O O6 XBX . . . E 3 130.094 95.093 153.371 1 78.4 ? O6 XBX 401 A 1 HETATM 65 O O7 XBX . . . E 3 124.65 94.508 153.755 1 70.61 ? O7 XBX 401 A 1 HETATM 66 O O8 XBX . . . E 3 126.363 93.454 154.639 1 74.2 ? O8 XBX 401 A 1 HETATM 67 O O9 XBX . . . E 3 125.265 95.627 150.983 1 69.47 ? O9 XBX 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 67 #