data_8QZ7
#
_model_server_result.job_id            PFNgKf2oefA0a0dP6TYGsQ 
_model_server_result.datetime_utc      '2024-11-17 02:35:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qz7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    8QZ7 
#
_exptl.entry_id    8QZ7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QZ7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QZ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 22 D CYS 22 1_555 C SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 18 A ASN 18 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 D ND2 ASN 18 C ASN 18 1_555 J C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 265 n n 
P O14 PC1 doub 266 n n 
P O13 PC1 sing 267 n n 
P O11 PC1 sing 268 n n 
O13 C11 PC1 sing 269 n n 
C11 C12 PC1 sing 270 n n 
C11 H111 PC1 sing 271 n n 
C11 H112 PC1 sing 272 n n 
C12 N PC1 sing 273 n n 
C12 H121 PC1 sing 274 n n 
C12 H122 PC1 sing 275 n n 
N C13 PC1 sing 276 n n 
N C14 PC1 sing 277 n n 
N C15 PC1 sing 278 n n 
C13 H131 PC1 sing 279 n n 
C13 H132 PC1 sing 280 n n 
C13 H133 PC1 sing 281 n n 
C14 H141 PC1 sing 282 n n 
C14 H142 PC1 sing 283 n n 
C14 H143 PC1 sing 284 n n 
C15 H151 PC1 sing 285 n n 
C15 H152 PC1 sing 286 n n 
C15 H153 PC1 sing 287 n n 
O11 C1 PC1 sing 288 n n 
C1 C2 PC1 sing 289 n n 
C1 H11 PC1 sing 290 n n 
C1 H12 PC1 sing 291 n n 
C2 O21 PC1 sing 292 n n 
C2 C3 PC1 sing 293 n n 
C2 H2 PC1 sing 294 n n 
O21 C21 PC1 sing 295 n n 
C21 O22 PC1 doub 296 n n 
C21 C22 PC1 sing 297 n n 
C22 C23 PC1 sing 298 n n 
C22 H221 PC1 sing 299 n n 
C22 H222 PC1 sing 300 n n 
C23 C24 PC1 sing 301 n n 
C23 H231 PC1 sing 302 n n 
C23 H232 PC1 sing 303 n n 
C24 C25 PC1 sing 304 n n 
C24 H241 PC1 sing 305 n n 
C24 H242 PC1 sing 306 n n 
C25 C26 PC1 sing 307 n n 
C25 H251 PC1 sing 308 n n 
C25 H252 PC1 sing 309 n n 
C26 C27 PC1 sing 310 n n 
C26 H261 PC1 sing 311 n n 
C26 H262 PC1 sing 312 n n 
C27 C28 PC1 sing 313 n n 
C27 H271 PC1 sing 314 n n 
C27 H272 PC1 sing 315 n n 
C28 C29 PC1 sing 316 n n 
C28 H281 PC1 sing 317 n n 
C28 H282 PC1 sing 318 n n 
C29 C2A PC1 sing 319 n n 
C29 H291 PC1 sing 320 n n 
C29 H292 PC1 sing 321 n n 
C2A C2B PC1 sing 322 n n 
C2A H2A1 PC1 sing 323 n n 
C2A H2A2 PC1 sing 324 n n 
C2B C2C PC1 sing 325 n n 
C2B H2B1 PC1 sing 326 n n 
C2B H2B2 PC1 sing 327 n n 
C2C C2D PC1 sing 328 n n 
C2C H2C1 PC1 sing 329 n n 
C2C H2C2 PC1 sing 330 n n 
C2D C2E PC1 sing 331 n n 
C2D H2D1 PC1 sing 332 n n 
C2D H2D2 PC1 sing 333 n n 
C2E C2F PC1 sing 334 n n 
C2E H2E1 PC1 sing 335 n n 
C2E H2E2 PC1 sing 336 n n 
C2F C2G PC1 sing 337 n n 
C2F H2F1 PC1 sing 338 n n 
C2F H2F2 PC1 sing 339 n n 
C2G C2H PC1 sing 340 n n 
C2G H2G1 PC1 sing 341 n n 
C2G H2G2 PC1 sing 342 n n 
C2H C2I PC1 sing 343 n n 
C2H H2H1 PC1 sing 344 n n 
C2H H2H2 PC1 sing 345 n n 
C2I H2I1 PC1 sing 346 n n 
C2I H2I2 PC1 sing 347 n n 
C2I H2I3 PC1 sing 348 n n 
C3 O31 PC1 sing 349 n n 
C3 H31 PC1 sing 350 n n 
C3 H32 PC1 sing 351 n n 
O31 C31 PC1 sing 352 n n 
C31 O32 PC1 doub 353 n n 
C31 C32 PC1 sing 354 n n 
C32 C33 PC1 sing 355 n n 
C32 H321 PC1 sing 356 n n 
C32 H322 PC1 sing 357 n n 
C33 C34 PC1 sing 358 n n 
C33 H331 PC1 sing 359 n n 
C33 H332 PC1 sing 360 n n 
C34 C35 PC1 sing 361 n n 
C34 H341 PC1 sing 362 n n 
C34 H342 PC1 sing 363 n n 
C35 C36 PC1 sing 364 n n 
C35 H351 PC1 sing 365 n n 
C35 H352 PC1 sing 366 n n 
C36 C37 PC1 sing 367 n n 
C36 H361 PC1 sing 368 n n 
C36 H362 PC1 sing 369 n n 
C37 C38 PC1 sing 370 n n 
C37 H371 PC1 sing 371 n n 
C37 H372 PC1 sing 372 n n 
C38 C39 PC1 sing 373 n n 
C38 H381 PC1 sing 374 n n 
C38 H382 PC1 sing 375 n n 
C39 C3A PC1 sing 376 n n 
C39 H391 PC1 sing 377 n n 
C39 H392 PC1 sing 378 n n 
C3A C3B PC1 sing 379 n n 
C3A H3A1 PC1 sing 380 n n 
C3A H3A2 PC1 sing 381 n n 
C3B C3C PC1 sing 382 n n 
C3B H3B1 PC1 sing 383 n n 
C3B H3B2 PC1 sing 384 n n 
C3C C3D PC1 sing 385 n n 
C3C H3C1 PC1 sing 386 n n 
C3C H3C2 PC1 sing 387 n n 
C3D C3E PC1 sing 388 n n 
C3D H3D1 PC1 sing 389 n n 
C3D H3D2 PC1 sing 390 n n 
C3E C3F PC1 sing 391 n n 
C3E H3E1 PC1 sing 392 n n 
C3E H3E2 PC1 sing 393 n n 
C3F C3G PC1 sing 394 n n 
C3F H3F1 PC1 sing 395 n n 
C3F H3F2 PC1 sing 396 n n 
C3G C3H PC1 sing 397 n n 
C3G H3G1 PC1 sing 398 n n 
C3G H3G2 PC1 sing 399 n n 
C3H C3I PC1 sing 400 n n 
C3H H3H1 PC1 sing 401 n n 
C3H H3H2 PC1 sing 402 n n 
C3I H3I1 PC1 sing 403 n n 
C3I H3I2 PC1 sing 404 n n 
C3I H3I3 PC1 sing 405 n n 
#
_atom_sites.entry_id                     8QZ7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 XBX A 1 401 401 XBX LIG . 
F 4 PC1 A 1 402 402 PC1 PC1 . 
G 5 NAG A 1 403 403 NAG NAG . 
H 3 XBX C 1 401 401 XBX LIG . 
I 4 PC1 C 1 402 402 PC1 PC1 . 
J 5 NAG C 1 403 403 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . I 4 109.39 116.781 114.897 1 86.43 ? O12 PC1 402 C 1 
HETATM 2 P P PC1 . . . I 4 107.906 116.646 114.875 1 93.02 ? P PC1 402 C 1 
HETATM 3 O O14 PC1 . . . I 4 107.185 115.444 114.366 1 86.63 ? O14 PC1 402 C 1 
HETATM 4 O O13 PC1 . . . I 4 107.25 117.906 114.036 1 86.17 ? O13 PC1 402 C 1 
HETATM 5 C C11 PC1 . . . I 4 108.103 118.793 113.356 1 85.4 ? C11 PC1 402 C 1 
HETATM 6 C C12 PC1 . . . I 4 107.336 119.165 112.095 1 84.13 ? C12 PC1 402 C 1 
HETATM 7 N N PC1 . . . I 4 106.729 120.534 112.088 1 79.26 ? N PC1 402 C 1 
HETATM 8 C C13 PC1 . . . I 4 107.769 121.586 111.942 1 80.81 ? C13 PC1 402 C 1 
HETATM 9 C C14 PC1 . . . I 4 105.8 120.604 110.928 1 77.92 ? C14 PC1 402 C 1 
HETATM 10 C C15 PC1 . . . I 4 105.952 120.785 113.33 1 78.76 ? C15 PC1 402 C 1 
HETATM 11 O O11 PC1 . . . I 4 107.42 117 116.401 1 78.93 ? O11 PC1 402 C 1 
HETATM 12 C C1 PC1 . . . I 4 108.29 116.739 117.479 1 77.3 ? C1 PC1 402 C 1 
HETATM 13 C C2 PC1 . . . I 4 107.804 117.489 118.701 1 81.79 ? C2 PC1 402 C 1 
HETATM 14 O O21 PC1 . . . I 4 106.387 117.381 118.857 1 80.81 ? O21 PC1 402 C 1 
HETATM 15 C C21 PC1 . . . I 4 105.86 117.567 120.063 1 83.82 ? C21 PC1 402 C 1 
HETATM 16 O O22 PC1 . . . I 4 106.496 117.486 121.082 1 85.83 ? O22 PC1 402 C 1 
HETATM 17 C C22 PC1 . . . I 4 104.396 117.889 119.973 1 81.27 ? C22 PC1 402 C 1 
HETATM 18 C C23 PC1 . . . I 4 103.665 117.827 121.304 1 81.69 ? C23 PC1 402 C 1 
HETATM 19 C C24 PC1 . . . I 4 103.936 119.053 122.167 1 79.33 ? C24 PC1 402 C 1 
HETATM 20 C C25 PC1 . . . I 4 103.166 119.036 123.48 1 83.33 ? C25 PC1 402 C 1 
HETATM 21 C C26 PC1 . . . I 4 103.345 120.31 124.295 1 82.67 ? C26 PC1 402 C 1 
HETATM 22 C C27 PC1 . . . I 4 102.436 120.387 125.516 1 80.49 ? C27 PC1 402 C 1 
HETATM 23 C C28 PC1 . . . I 4 100.955 120.39 125.158 1 79.43 ? C28 PC1 402 C 1 
HETATM 24 C C3 PC1 . . . I 4 108.103 118.969 118.604 1 85.2 ? C3 PC1 402 C 1 
HETATM 25 O O31 PC1 . . . I 4 109.284 119.208 119.359 1 87.25 ? O31 PC1 402 C 1 
HETATM 26 C C31 PC1 . . . I 4 109.502 120.438 119.809 1 84.51 ? C31 PC1 402 C 1 
HETATM 27 O O32 PC1 . . . I 4 110.253 121.212 119.271 1 84.9 ? O32 PC1 402 C 1 
HETATM 28 C C32 PC1 . . . I 4 108.713 120.722 121.054 1 80.24 ? C32 PC1 402 C 1 
HETATM 29 C C33 PC1 . . . I 4 109.512 120.518 122.332 1 79.5 ? C33 PC1 402 C 1 
HETATM 30 C C34 PC1 . . . I 4 108.807 121.128 123.535 1 80.79 ? C34 PC1 402 C 1 
HETATM 31 C C35 PC1 . . . I 4 107.459 120.488 123.831 1 84.94 ? C35 PC1 402 C 1 
HETATM 32 C C36 PC1 . . . I 4 106.884 120.94 125.165 1 82.17 ? C36 PC1 402 C 1 
HETATM 33 C C37 PC1 . . . I 4 106.467 122.403 125.182 1 77.53 ? C37 PC1 402 C 1 
HETATM 34 C C38 PC1 . . . I 4 107.065 123.167 126.353 1 80.22 ? C38 PC1 402 C 1 
HETATM 35 C C39 PC1 . . . I 4 106.52 122.728 127.703 1 82.21 ? C39 PC1 402 C 1 
HETATM 36 C C3A PC1 . . . I 4 105.015 122.925 127.821 1 83.02 ? C3A PC1 402 C 1 
HETATM 37 C C3B PC1 . . . I 4 104.478 122.632 129.213 1 83.24 ? C3B PC1 402 C 1 
HETATM 38 C C3C PC1 . . . I 4 102.961 122.743 129.297 1 82.97 ? C3C PC1 402 C 1 
HETATM 39 C C3D PC1 . . . I 4 102.423 124.041 128.716 1 80.74 ? C3D PC1 402 C 1 
HETATM 40 C C3E PC1 . . . I 4 100.905 124.143 128.781 1 81.48 ? C3E PC1 402 C 1 
HETATM 41 C C3F PC1 . . . I 4 100.402 124.888 130.011 1 86.52 ? C3F PC1 402 C 1 
HETATM 42 C C3G PC1 . . . I 4 100.728 126.376 129.983 1 85.87 ? C3G PC1 402 C 1 
HETATM 43 C C3H PC1 . . . I 4 99.491 127.263 129.973 1 83.24 ? C3H PC1 402 C 1 
HETATM 44 C C3I PC1 . . . I 4 98.596 127.009 128.767 1 85.1 ? C3I PC1 402 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#