data_8QZA
#
_model_server_result.job_id            tYa31CGJqN1sVVtVpX4qOQ 
_model_server_result.datetime_utc      '2025-08-24 13:11:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    8QZA 
#
_exptl.entry_id    8QZA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.991 
_cell.angle_gamma         90 
_cell.entry_id            8QZA 
_cell.length_a            62.352 
_cell.length_b            75.986 
_cell.length_c            74.589 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 211 A GLU 211 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc2 A O PHE 212 A PHE 212 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc3 A O GLU 213 A GLU 213 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc4 A O MET 215 A MET 215 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc5 A O ASP 243 A ASP 243 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 A OD1 ASP 265 A ASP 265 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc7 C MG MG . A MG 401 1_555 J O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
metalc ? metalc8 C MG MG . A MG 401 1_555 J O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc9 C MG MG . A MG 401 1_555 K O HOH . B HOH 503 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc10 C MG MG . A MG 401 1_555 K O HOH . B HOH 512 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
metalc ? metalc11 C MG MG . A MG 401 1_555 K O HOH . B HOH 534 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc12 D MG MG . A MG 402 1_555 B OD1 ASP 265 B ASP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc13 J O HOH . A HOH 501 2_556 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc14 J O HOH . A HOH 502 2_556 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc15 J O HOH . A HOH 503 2_556 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc16 J O HOH . A HOH 508 2_556 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc17 J O HOH . A HOH 510 1_455 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc18 J O HOH . A HOH 517 1_455 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc19 J O HOH . A HOH 529 1_455 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc20 B OE2 GLU 211 B GLU 211 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc21 B O PHE 212 B PHE 212 1_555 I NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc22 B O GLU 213 B GLU 213 1_555 I NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? 
metalc ? metalc23 B O MET 215 B MET 215 1_555 I NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc24 B O ASP 243 B ASP 243 1_555 I NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc25 G MG MG . B MG 401 1_555 K O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc26 G MG MG . B MG 401 1_555 K O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc27 H MG MG . B MG 402 1_555 K O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc28 H MG MG . B MG 402 1_555 K O HOH . B HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc29 I NA NA . B NA 403 1_555 K O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8QZA 
_atom_sites.fract_transf_matrix[1][1]    0.016038 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001119 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01316 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 401 2 MG MG . 
D 2 MG A 1 402 4 MG MG . 
E 2 MG A 1 403 5 MG MG . 
F 3 NA A 1 404 1 NA NA . 
G 2 MG B 1 401 1 MG MG . 
H 2 MG B 1 402 3 MG MG . 
I 3 NA B 1 403 2 NA NA . 
J 4 HOH A 1 501 66 HOH HOH . 
J 4 HOH A 2 502 62 HOH HOH . 
J 4 HOH A 3 503 65 HOH HOH . 
J 4 HOH A 4 504 46 HOH HOH . 
J 4 HOH A 5 505 1 HOH HOH . 
J 4 HOH A 6 506 21 HOH HOH . 
J 4 HOH A 7 507 18 HOH HOH . 
J 4 HOH A 8 508 61 HOH HOH . 
J 4 HOH A 9 509 39 HOH HOH . 
J 4 HOH A 10 510 41 HOH HOH . 
J 4 HOH A 11 511 12 HOH HOH . 
J 4 HOH A 12 512 6 HOH HOH . 
J 4 HOH A 13 513 19 HOH HOH . 
J 4 HOH A 14 514 24 HOH HOH . 
J 4 HOH A 15 515 32 HOH HOH . 
J 4 HOH A 16 516 30 HOH HOH . 
J 4 HOH A 17 517 42 HOH HOH . 
J 4 HOH A 18 518 22 HOH HOH . 
J 4 HOH A 19 519 53 HOH HOH . 
J 4 HOH A 20 520 28 HOH HOH . 
J 4 HOH A 21 521 9 HOH HOH . 
J 4 HOH A 22 522 72 HOH HOH . 
J 4 HOH A 23 523 10 HOH HOH . 
J 4 HOH A 24 524 38 HOH HOH . 
J 4 HOH A 25 525 7 HOH HOH . 
J 4 HOH A 26 526 71 HOH HOH . 
J 4 HOH A 27 527 4 HOH HOH . 
J 4 HOH A 28 528 16 HOH HOH . 
J 4 HOH A 29 529 45 HOH HOH . 
J 4 HOH A 30 530 70 HOH HOH . 
K 4 HOH B 1 501 31 HOH HOH . 
K 4 HOH B 2 502 59 HOH HOH . 
K 4 HOH B 3 503 37 HOH HOH . 
K 4 HOH B 4 504 33 HOH HOH . 
K 4 HOH B 5 505 44 HOH HOH . 
K 4 HOH B 6 506 3 HOH HOH . 
K 4 HOH B 7 507 15 HOH HOH . 
K 4 HOH B 8 508 14 HOH HOH . 
K 4 HOH B 9 509 43 HOH HOH . 
K 4 HOH B 10 510 47 HOH HOH . 
K 4 HOH B 11 511 29 HOH HOH . 
K 4 HOH B 12 512 36 HOH HOH . 
K 4 HOH B 13 513 68 HOH HOH . 
K 4 HOH B 14 514 67 HOH HOH . 
K 4 HOH B 15 515 2 HOH HOH . 
K 4 HOH B 16 516 34 HOH HOH . 
K 4 HOH B 17 517 54 HOH HOH . 
K 4 HOH B 18 518 5 HOH HOH . 
K 4 HOH B 19 519 8 HOH HOH . 
K 4 HOH B 20 520 25 HOH HOH . 
K 4 HOH B 21 521 20 HOH HOH . 
K 4 HOH B 22 522 55 HOH HOH . 
K 4 HOH B 23 523 13 HOH HOH . 
K 4 HOH B 24 524 11 HOH HOH . 
K 4 HOH B 25 525 17 HOH HOH . 
K 4 HOH B 26 526 51 HOH HOH . 
K 4 HOH B 27 527 48 HOH HOH . 
K 4 HOH B 28 528 27 HOH HOH . 
K 4 HOH B 29 529 35 HOH HOH . 
K 4 HOH B 30 530 50 HOH HOH . 
K 4 HOH B 31 531 56 HOH HOH . 
K 4 HOH B 32 532 57 HOH HOH . 
K 4 HOH B 33 533 74 HOH HOH . 
K 4 HOH B 34 534 40 HOH HOH . 
K 4 HOH B 35 535 60 HOH HOH . 
K 4 HOH B 36 536 58 HOH HOH . 
K 4 HOH B 37 537 26 HOH HOH . 
K 4 HOH B 38 538 73 HOH HOH . 
K 4 HOH B 39 539 69 HOH HOH . 
K 4 HOH B 40 540 49 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               29.47 
_atom_site.Cartn_y               -11.911 
_atom_site.Cartn_z               37.348 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.26 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           710 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#