data_8QZD # _model_server_result.job_id bsdTWKRFTMYXISfVvU3--Q _model_server_result.datetime_utc '2024-11-02 11:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":613}' # _entry.id 8QZD # _exptl.entry_id 8QZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QZD _cell.length_a 45.924 _cell.length_b 80.312 _cell.length_c 89.084 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8QZD _atom_sites.fract_transf_matrix[1][1] 0.021775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 601 601 EDO EDO . C 2 EDO A 1 602 603 EDO EDO . D 2 EDO A 1 603 604 EDO EDO . E 2 EDO A 1 604 605 EDO EDO . F 2 EDO A 1 605 606 EDO EDO . G 2 EDO A 1 606 607 EDO EDO . H 2 EDO A 1 607 608 EDO EDO . I 2 EDO A 1 608 609 EDO EDO . J 3 XDZ A 1 609 610 XDZ LIG . K 2 EDO A 1 610 611 EDO EDO . L 2 EDO A 1 611 621 EDO EDO . M 4 BR A 1 612 701 BR BR . N 2 EDO A 1 613 702 EDO EDO . O 2 EDO A 1 614 703 EDO EDO . P 5 HOH A 1 701 317 HOH HOH . P 5 HOH A 2 702 219 HOH HOH . P 5 HOH A 3 703 306 HOH HOH . P 5 HOH A 4 704 53 HOH HOH . P 5 HOH A 5 705 316 HOH HOH . P 5 HOH A 6 706 62 HOH HOH . P 5 HOH A 7 707 179 HOH HOH . P 5 HOH A 8 708 288 HOH HOH . P 5 HOH A 9 709 200 HOH HOH . P 5 HOH A 10 710 20 HOH HOH . P 5 HOH A 11 711 277 HOH HOH . P 5 HOH A 12 712 269 HOH HOH . P 5 HOH A 13 713 64 HOH HOH . P 5 HOH A 14 714 292 HOH HOH . P 5 HOH A 15 715 188 HOH HOH . P 5 HOH A 16 716 202 HOH HOH . P 5 HOH A 17 717 95 HOH HOH . P 5 HOH A 18 718 82 HOH HOH . P 5 HOH A 19 719 164 HOH HOH . P 5 HOH A 20 720 261 HOH HOH . P 5 HOH A 21 721 251 HOH HOH . P 5 HOH A 22 722 105 HOH HOH . P 5 HOH A 23 723 296 HOH HOH . P 5 HOH A 24 724 307 HOH HOH . P 5 HOH A 25 725 183 HOH HOH . P 5 HOH A 26 726 7 HOH HOH . P 5 HOH A 27 727 120 HOH HOH . P 5 HOH A 28 728 175 HOH HOH . P 5 HOH A 29 729 177 HOH HOH . P 5 HOH A 30 730 149 HOH HOH . P 5 HOH A 31 731 199 HOH HOH . P 5 HOH A 32 732 15 HOH HOH . P 5 HOH A 33 733 290 HOH HOH . P 5 HOH A 34 734 257 HOH HOH . P 5 HOH A 35 735 30 HOH HOH . P 5 HOH A 36 736 67 HOH HOH . P 5 HOH A 37 737 191 HOH HOH . P 5 HOH A 38 738 79 HOH HOH . P 5 HOH A 39 739 10 HOH HOH . P 5 HOH A 40 740 155 HOH HOH . P 5 HOH A 41 741 280 HOH HOH . P 5 HOH A 42 742 196 HOH HOH . P 5 HOH A 43 743 310 HOH HOH . P 5 HOH A 44 744 274 HOH HOH . P 5 HOH A 45 745 220 HOH HOH . P 5 HOH A 46 746 74 HOH HOH . P 5 HOH A 47 747 18 HOH HOH . P 5 HOH A 48 748 73 HOH HOH . P 5 HOH A 49 749 133 HOH HOH . P 5 HOH A 50 750 99 HOH HOH . P 5 HOH A 51 751 19 HOH HOH . P 5 HOH A 52 752 50 HOH HOH . P 5 HOH A 53 753 125 HOH HOH . P 5 HOH A 54 754 212 HOH HOH . P 5 HOH A 55 755 239 HOH HOH . P 5 HOH A 56 756 185 HOH HOH . P 5 HOH A 57 757 40 HOH HOH . P 5 HOH A 58 758 24 HOH HOH . P 5 HOH A 59 759 113 HOH HOH . P 5 HOH A 60 760 276 HOH HOH . P 5 HOH A 61 761 21 HOH HOH . P 5 HOH A 62 762 103 HOH HOH . P 5 HOH A 63 763 97 HOH HOH . P 5 HOH A 64 764 117 HOH HOH . P 5 HOH A 65 765 222 HOH HOH . P 5 HOH A 66 766 213 HOH HOH . P 5 HOH A 67 767 127 HOH HOH . P 5 HOH A 68 768 266 HOH HOH . P 5 HOH A 69 769 60 HOH HOH . P 5 HOH A 70 770 17 HOH HOH . P 5 HOH A 71 771 25 HOH HOH . P 5 HOH A 72 772 194 HOH HOH . P 5 HOH A 73 773 3 HOH HOH . P 5 HOH A 74 774 283 HOH HOH . P 5 HOH A 75 775 275 HOH HOH . P 5 HOH A 76 776 98 HOH HOH . P 5 HOH A 77 777 48 HOH HOH . P 5 HOH A 78 778 2 HOH HOH . P 5 HOH A 79 779 119 HOH HOH . P 5 HOH A 80 780 169 HOH HOH . P 5 HOH A 81 781 33 HOH HOH . P 5 HOH A 82 782 286 HOH HOH . P 5 HOH A 83 783 134 HOH HOH . P 5 HOH A 84 784 11 HOH HOH . P 5 HOH A 85 785 109 HOH HOH . P 5 HOH A 86 786 300 HOH HOH . P 5 HOH A 87 787 304 HOH HOH . P 5 HOH A 88 788 297 HOH HOH . P 5 HOH A 89 789 9 HOH HOH . P 5 HOH A 90 790 148 HOH HOH . P 5 HOH A 91 791 29 HOH HOH . P 5 HOH A 92 792 136 HOH HOH . P 5 HOH A 93 793 92 HOH HOH . P 5 HOH A 94 794 45 HOH HOH . P 5 HOH A 95 795 142 HOH HOH . P 5 HOH A 96 796 51 HOH HOH . P 5 HOH A 97 797 35 HOH HOH . P 5 HOH A 98 798 174 HOH HOH . P 5 HOH A 99 799 124 HOH HOH . P 5 HOH A 100 800 165 HOH HOH . P 5 HOH A 101 801 31 HOH HOH . P 5 HOH A 102 802 126 HOH HOH . P 5 HOH A 103 803 106 HOH HOH . P 5 HOH A 104 804 209 HOH HOH . P 5 HOH A 105 805 102 HOH HOH . P 5 HOH A 106 806 252 HOH HOH . P 5 HOH A 107 807 207 HOH HOH . P 5 HOH A 108 808 143 HOH HOH . P 5 HOH A 109 809 271 HOH HOH . P 5 HOH A 110 810 58 HOH HOH . P 5 HOH A 111 811 43 HOH HOH . P 5 HOH A 112 812 52 HOH HOH . P 5 HOH A 113 813 248 HOH HOH . P 5 HOH A 114 814 63 HOH HOH . P 5 HOH A 115 815 28 HOH HOH . P 5 HOH A 116 816 189 HOH HOH . P 5 HOH A 117 817 190 HOH HOH . P 5 HOH A 118 818 16 HOH HOH . P 5 HOH A 119 819 38 HOH HOH . P 5 HOH A 120 820 112 HOH HOH . P 5 HOH A 121 821 140 HOH HOH . P 5 HOH A 122 822 4 HOH HOH . P 5 HOH A 123 823 295 HOH HOH . P 5 HOH A 124 824 291 HOH HOH . P 5 HOH A 125 825 254 HOH HOH . P 5 HOH A 126 826 180 HOH HOH . P 5 HOH A 127 827 152 HOH HOH . P 5 HOH A 128 828 115 HOH HOH . P 5 HOH A 129 829 37 HOH HOH . P 5 HOH A 130 830 87 HOH HOH . P 5 HOH A 131 831 39 HOH HOH . P 5 HOH A 132 832 54 HOH HOH . P 5 HOH A 133 833 265 HOH HOH . P 5 HOH A 134 834 139 HOH HOH . P 5 HOH A 135 835 41 HOH HOH . P 5 HOH A 136 836 313 HOH HOH . P 5 HOH A 137 837 130 HOH HOH . P 5 HOH A 138 838 47 HOH HOH . P 5 HOH A 139 839 27 HOH HOH . P 5 HOH A 140 840 94 HOH HOH . P 5 HOH A 141 841 26 HOH HOH . P 5 HOH A 142 842 90 HOH HOH . P 5 HOH A 143 843 270 HOH HOH . P 5 HOH A 144 844 203 HOH HOH . P 5 HOH A 145 845 104 HOH HOH . P 5 HOH A 146 846 22 HOH HOH . P 5 HOH A 147 847 86 HOH HOH . P 5 HOH A 148 848 5 HOH HOH . P 5 HOH A 149 849 172 HOH HOH . P 5 HOH A 150 850 75 HOH HOH . P 5 HOH A 151 851 13 HOH HOH . P 5 HOH A 152 852 161 HOH HOH . P 5 HOH A 153 853 123 HOH HOH . P 5 HOH A 154 854 55 HOH HOH . P 5 HOH A 155 855 6 HOH HOH . P 5 HOH A 156 856 204 HOH HOH . P 5 HOH A 157 857 122 HOH HOH . P 5 HOH A 158 858 176 HOH HOH . P 5 HOH A 159 859 132 HOH HOH . P 5 HOH A 160 860 61 HOH HOH . P 5 HOH A 161 861 81 HOH HOH . P 5 HOH A 162 862 101 HOH HOH . P 5 HOH A 163 863 88 HOH HOH . P 5 HOH A 164 864 96 HOH HOH . P 5 HOH A 165 865 118 HOH HOH . P 5 HOH A 166 866 234 HOH HOH . P 5 HOH A 167 867 153 HOH HOH . P 5 HOH A 168 868 181 HOH HOH . P 5 HOH A 169 869 301 HOH HOH . P 5 HOH A 170 870 182 HOH HOH . P 5 HOH A 171 871 135 HOH HOH . P 5 HOH A 172 872 110 HOH HOH . P 5 HOH A 173 873 162 HOH HOH . P 5 HOH A 174 874 71 HOH HOH . P 5 HOH A 175 875 36 HOH HOH . P 5 HOH A 176 876 59 HOH HOH . P 5 HOH A 177 877 8 HOH HOH . P 5 HOH A 178 878 168 HOH HOH . P 5 HOH A 179 879 201 HOH HOH . P 5 HOH A 180 880 256 HOH HOH . P 5 HOH A 181 881 151 HOH HOH . P 5 HOH A 182 882 65 HOH HOH . P 5 HOH A 183 883 253 HOH HOH . P 5 HOH A 184 884 210 HOH HOH . P 5 HOH A 185 885 23 HOH HOH . P 5 HOH A 186 886 114 HOH HOH . P 5 HOH A 187 887 264 HOH HOH . P 5 HOH A 188 888 89 HOH HOH . P 5 HOH A 189 889 281 HOH HOH . P 5 HOH A 190 890 32 HOH HOH . P 5 HOH A 191 891 279 HOH HOH . P 5 HOH A 192 892 244 HOH HOH . P 5 HOH A 193 893 116 HOH HOH . P 5 HOH A 194 894 282 HOH HOH . P 5 HOH A 195 895 231 HOH HOH . P 5 HOH A 196 896 205 HOH HOH . P 5 HOH A 197 897 268 HOH HOH . P 5 HOH A 198 898 72 HOH HOH . P 5 HOH A 199 899 128 HOH HOH . P 5 HOH A 200 900 84 HOH HOH . P 5 HOH A 201 901 272 HOH HOH . P 5 HOH A 202 902 49 HOH HOH . P 5 HOH A 203 903 216 HOH HOH . P 5 HOH A 204 904 298 HOH HOH . P 5 HOH A 205 905 225 HOH HOH . P 5 HOH A 206 906 78 HOH HOH . P 5 HOH A 207 907 215 HOH HOH . P 5 HOH A 208 908 163 HOH HOH . P 5 HOH A 209 909 34 HOH HOH . P 5 HOH A 210 910 154 HOH HOH . P 5 HOH A 211 911 243 HOH HOH . P 5 HOH A 212 912 245 HOH HOH . P 5 HOH A 213 913 233 HOH HOH . P 5 HOH A 214 914 223 HOH HOH . P 5 HOH A 215 915 121 HOH HOH . P 5 HOH A 216 916 144 HOH HOH . P 5 HOH A 217 917 178 HOH HOH . P 5 HOH A 218 918 230 HOH HOH . P 5 HOH A 219 919 187 HOH HOH . P 5 HOH A 220 920 229 HOH HOH . P 5 HOH A 221 921 146 HOH HOH . P 5 HOH A 222 922 160 HOH HOH . P 5 HOH A 223 923 141 HOH HOH . P 5 HOH A 224 924 159 HOH HOH . P 5 HOH A 225 925 167 HOH HOH . P 5 HOH A 226 926 228 HOH HOH . P 5 HOH A 227 927 129 HOH HOH . P 5 HOH A 228 928 66 HOH HOH . P 5 HOH A 229 929 93 HOH HOH . P 5 HOH A 230 930 247 HOH HOH . P 5 HOH A 231 931 249 HOH HOH . P 5 HOH A 232 932 80 HOH HOH . P 5 HOH A 233 933 166 HOH HOH . P 5 HOH A 234 934 217 HOH HOH . P 5 HOH A 235 935 46 HOH HOH . P 5 HOH A 236 936 198 HOH HOH . P 5 HOH A 237 937 312 HOH HOH . P 5 HOH A 238 938 289 HOH HOH . P 5 HOH A 239 939 83 HOH HOH . P 5 HOH A 240 940 131 HOH HOH . P 5 HOH A 241 941 192 HOH HOH . P 5 HOH A 242 942 111 HOH HOH . P 5 HOH A 243 943 193 HOH HOH . P 5 HOH A 244 944 293 HOH HOH . P 5 HOH A 245 945 107 HOH HOH . P 5 HOH A 246 946 77 HOH HOH . P 5 HOH A 247 947 224 HOH HOH . P 5 HOH A 248 948 218 HOH HOH . P 5 HOH A 249 949 232 HOH HOH . P 5 HOH A 250 950 195 HOH HOH . P 5 HOH A 251 951 158 HOH HOH . P 5 HOH A 252 952 186 HOH HOH . P 5 HOH A 253 953 237 HOH HOH . P 5 HOH A 254 954 184 HOH HOH . P 5 HOH A 255 955 157 HOH HOH . P 5 HOH A 256 956 171 HOH HOH . P 5 HOH A 257 957 287 HOH HOH . P 5 HOH A 258 958 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 2 -0.834 -5.75 -17.815 1 46.19 ? C1 EDO 613 A 1 HETATM 2 O O1 EDO . . . N 2 -0.39 -4.609 -18.522 1 40.95 ? O1 EDO 613 A 1 HETATM 3 C C2 EDO . . . N 2 -2.308 -5.732 -17.649 1 48.54 ? C2 EDO 613 A 1 HETATM 4 O O2 EDO . . . N 2 -2.889 -7.007 -17.784 1 44.62 ? O2 EDO 613 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #