data_8QZE # _model_server_result.job_id 4U3lMyYkUeZe3qLbLcj13w _model_server_result.datetime_utc '2024-11-30 04:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 8QZE # _exptl.entry_id 8QZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QZE _cell.length_a 125.82 _cell.length_b 127.2 _cell.length_c 64.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 401 A CYS 400 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N1 IMD . A IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 B SG CYS 401 B CYS 400 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 F FE HEM . B HEM 500 1_555 G N1 IMD . B IMD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 268 n y N1 C5 IMD sing 269 n y N1 HN1 IMD sing 270 n n C2 N3 IMD doub 271 n y C2 H2 IMD sing 272 n n N3 C4 IMD sing 273 n y N3 HN3 IMD sing 274 n n C4 C5 IMD doub 275 n y C4 H4 IMD sing 276 n n C5 H5 IMD sing 277 n n # _atom_sites.entry_id 8QZE _atom_sites.fract_transf_matrix[1][1] 0.007948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 541 HEM HEM . D 3 IMD A 1 502 542 IMD IMD . E 4 GOL A 1 503 543 GOL GOL . F 2 HEM B 1 500 500 HEM HEM . G 3 IMD B 1 501 501 IMD IMD . H 5 HOH A 1 601 273 HOH HOH . H 5 HOH A 2 602 253 HOH HOH . H 5 HOH A 3 603 189 HOH HOH . H 5 HOH A 4 604 127 HOH HOH . H 5 HOH A 5 605 178 HOH HOH . H 5 HOH A 6 606 260 HOH HOH . H 5 HOH A 7 607 268 HOH HOH . H 5 HOH A 8 608 250 HOH HOH . H 5 HOH A 9 609 151 HOH HOH . H 5 HOH A 10 610 202 HOH HOH . H 5 HOH A 11 611 34 HOH HOH . H 5 HOH A 12 612 240 HOH HOH . H 5 HOH A 13 613 102 HOH HOH . H 5 HOH A 14 614 271 HOH HOH . H 5 HOH A 15 615 188 HOH HOH . H 5 HOH A 16 616 163 HOH HOH . H 5 HOH A 17 617 194 HOH HOH . H 5 HOH A 18 618 54 HOH HOH . H 5 HOH A 19 619 192 HOH HOH . H 5 HOH A 20 620 101 HOH HOH . H 5 HOH A 21 621 261 HOH HOH . H 5 HOH A 22 622 259 HOH HOH . H 5 HOH A 23 623 256 HOH HOH . H 5 HOH A 24 624 152 HOH HOH . H 5 HOH A 25 625 154 HOH HOH . H 5 HOH A 26 626 12 HOH HOH . H 5 HOH A 27 627 242 HOH HOH . H 5 HOH A 28 628 126 HOH HOH . H 5 HOH A 29 629 157 HOH HOH . H 5 HOH A 30 630 117 HOH HOH . H 5 HOH A 31 631 184 HOH HOH . H 5 HOH A 32 632 133 HOH HOH . H 5 HOH A 33 633 238 HOH HOH . H 5 HOH A 34 634 186 HOH HOH . H 5 HOH A 35 635 156 HOH HOH . H 5 HOH A 36 636 20 HOH HOH . H 5 HOH A 37 637 185 HOH HOH . H 5 HOH A 38 638 59 HOH HOH . H 5 HOH A 39 639 294 HOH HOH . H 5 HOH A 40 640 110 HOH HOH . H 5 HOH A 41 641 234 HOH HOH . H 5 HOH A 42 642 65 HOH HOH . H 5 HOH A 43 643 171 HOH HOH . H 5 HOH A 44 644 41 HOH HOH . H 5 HOH A 45 645 22 HOH HOH . H 5 HOH A 46 646 196 HOH HOH . H 5 HOH A 47 647 24 HOH HOH . H 5 HOH A 48 648 48 HOH HOH . H 5 HOH A 49 649 8 HOH HOH . H 5 HOH A 50 650 274 HOH HOH . H 5 HOH A 51 651 42 HOH HOH . H 5 HOH A 52 652 249 HOH HOH . H 5 HOH A 53 653 97 HOH HOH . H 5 HOH A 54 654 200 HOH HOH . H 5 HOH A 55 655 57 HOH HOH . H 5 HOH A 56 656 146 HOH HOH . H 5 HOH A 57 657 92 HOH HOH . H 5 HOH A 58 658 204 HOH HOH . H 5 HOH A 59 659 153 HOH HOH . H 5 HOH A 60 660 166 HOH HOH . H 5 HOH A 61 661 265 HOH HOH . H 5 HOH A 62 662 107 HOH HOH . H 5 HOH A 63 663 143 HOH HOH . H 5 HOH A 64 664 193 HOH HOH . H 5 HOH A 65 665 114 HOH HOH . H 5 HOH A 66 666 191 HOH HOH . H 5 HOH A 67 667 145 HOH HOH . H 5 HOH A 68 668 125 HOH HOH . H 5 HOH A 69 669 103 HOH HOH . H 5 HOH A 70 670 198 HOH HOH . H 5 HOH A 71 671 169 HOH HOH . H 5 HOH A 72 672 37 HOH HOH . H 5 HOH A 73 673 5 HOH HOH . H 5 HOH A 74 674 203 HOH HOH . H 5 HOH A 75 675 84 HOH HOH . H 5 HOH A 76 676 162 HOH HOH . H 5 HOH A 77 677 80 HOH HOH . H 5 HOH A 78 678 170 HOH HOH . H 5 HOH A 79 679 257 HOH HOH . H 5 HOH A 80 680 229 HOH HOH . H 5 HOH A 81 681 132 HOH HOH . H 5 HOH A 82 682 173 HOH HOH . H 5 HOH A 83 683 187 HOH HOH . H 5 HOH A 84 684 81 HOH HOH . H 5 HOH A 85 685 30 HOH HOH . H 5 HOH A 86 686 77 HOH HOH . H 5 HOH A 87 687 10 HOH HOH . H 5 HOH A 88 688 142 HOH HOH . H 5 HOH A 89 689 116 HOH HOH . H 5 HOH A 90 690 52 HOH HOH . H 5 HOH A 91 691 231 HOH HOH . H 5 HOH A 92 692 241 HOH HOH . H 5 HOH A 93 693 174 HOH HOH . H 5 HOH A 94 694 225 HOH HOH . H 5 HOH A 95 695 148 HOH HOH . H 5 HOH A 96 696 49 HOH HOH . H 5 HOH A 97 697 83 HOH HOH . H 5 HOH A 98 698 118 HOH HOH . H 5 HOH A 99 699 266 HOH HOH . H 5 HOH A 100 700 11 HOH HOH . H 5 HOH A 101 701 139 HOH HOH . H 5 HOH A 102 702 90 HOH HOH . H 5 HOH A 103 703 58 HOH HOH . H 5 HOH A 104 704 181 HOH HOH . H 5 HOH A 105 705 149 HOH HOH . H 5 HOH A 106 706 27 HOH HOH . H 5 HOH A 107 707 272 HOH HOH . H 5 HOH A 108 708 208 HOH HOH . H 5 HOH A 109 709 46 HOH HOH . H 5 HOH A 110 710 130 HOH HOH . H 5 HOH A 111 711 111 HOH HOH . H 5 HOH A 112 712 155 HOH HOH . H 5 HOH A 113 713 150 HOH HOH . H 5 HOH A 114 714 199 HOH HOH . H 5 HOH A 115 715 190 HOH HOH . H 5 HOH A 116 716 180 HOH HOH . H 5 HOH A 117 717 16 HOH HOH . H 5 HOH A 118 718 119 HOH HOH . H 5 HOH A 119 719 255 HOH HOH . H 5 HOH A 120 720 105 HOH HOH . H 5 HOH A 121 721 95 HOH HOH . H 5 HOH A 122 722 211 HOH HOH . H 5 HOH A 123 723 69 HOH HOH . H 5 HOH A 124 724 275 HOH HOH . H 5 HOH A 125 725 85 HOH HOH . H 5 HOH A 126 726 205 HOH HOH . H 5 HOH A 127 727 197 HOH HOH . H 5 HOH A 128 728 28 HOH HOH . H 5 HOH A 129 729 51 HOH HOH . H 5 HOH A 130 730 61 HOH HOH . H 5 HOH A 131 731 147 HOH HOH . H 5 HOH A 132 732 19 HOH HOH . H 5 HOH A 133 733 183 HOH HOH . H 5 HOH A 134 734 209 HOH HOH . H 5 HOH A 135 735 248 HOH HOH . H 5 HOH A 136 736 251 HOH HOH . H 5 HOH A 137 737 99 HOH HOH . H 5 HOH A 138 738 176 HOH HOH . H 5 HOH A 139 739 29 HOH HOH . H 5 HOH A 140 740 112 HOH HOH . H 5 HOH A 141 741 277 HOH HOH . H 5 HOH A 142 742 182 HOH HOH . H 5 HOH A 143 743 3 HOH HOH . H 5 HOH A 144 744 195 HOH HOH . H 5 HOH A 145 745 134 HOH HOH . H 5 HOH A 146 746 270 HOH HOH . H 5 HOH A 147 747 244 HOH HOH . H 5 HOH A 148 748 212 HOH HOH . H 5 HOH A 149 749 254 HOH HOH . H 5 HOH A 150 750 23 HOH HOH . H 5 HOH A 151 751 224 HOH HOH . H 5 HOH A 152 752 276 HOH HOH . H 5 HOH A 153 753 141 HOH HOH . H 5 HOH A 154 754 278 HOH HOH . H 5 HOH A 155 755 252 HOH HOH . H 5 HOH A 156 756 74 HOH HOH . H 5 HOH A 157 757 267 HOH HOH . H 5 HOH A 158 758 291 HOH HOH . H 5 HOH A 159 759 230 HOH HOH . H 5 HOH A 160 760 269 HOH HOH . H 5 HOH A 161 761 216 HOH HOH . H 5 HOH A 162 762 179 HOH HOH . H 5 HOH A 163 763 263 HOH HOH . H 5 HOH A 164 764 144 HOH HOH . I 5 HOH B 1 601 71 HOH HOH . I 5 HOH B 2 602 172 HOH HOH . I 5 HOH B 3 603 113 HOH HOH . I 5 HOH B 4 604 66 HOH HOH . I 5 HOH B 5 605 236 HOH HOH . I 5 HOH B 6 606 137 HOH HOH . I 5 HOH B 7 607 38 HOH HOH . I 5 HOH B 8 608 221 HOH HOH . I 5 HOH B 9 609 6 HOH HOH . I 5 HOH B 10 610 64 HOH HOH . I 5 HOH B 11 611 76 HOH HOH . I 5 HOH B 12 612 233 HOH HOH . I 5 HOH B 13 613 219 HOH HOH . I 5 HOH B 14 614 60 HOH HOH . I 5 HOH B 15 615 40 HOH HOH . I 5 HOH B 16 616 109 HOH HOH . I 5 HOH B 17 617 18 HOH HOH . I 5 HOH B 18 618 131 HOH HOH . I 5 HOH B 19 619 79 HOH HOH . I 5 HOH B 20 620 43 HOH HOH . I 5 HOH B 21 621 128 HOH HOH . I 5 HOH B 22 622 228 HOH HOH . I 5 HOH B 23 623 232 HOH HOH . I 5 HOH B 24 624 98 HOH HOH . I 5 HOH B 25 625 279 HOH HOH . I 5 HOH B 26 626 72 HOH HOH . I 5 HOH B 27 627 44 HOH HOH . I 5 HOH B 28 628 115 HOH HOH . I 5 HOH B 29 629 25 HOH HOH . I 5 HOH B 30 630 282 HOH HOH . I 5 HOH B 31 631 159 HOH HOH . I 5 HOH B 32 632 165 HOH HOH . I 5 HOH B 33 633 226 HOH HOH . I 5 HOH B 34 634 91 HOH HOH . I 5 HOH B 35 635 35 HOH HOH . I 5 HOH B 36 636 33 HOH HOH . I 5 HOH B 37 637 108 HOH HOH . I 5 HOH B 38 638 82 HOH HOH . I 5 HOH B 39 639 104 HOH HOH . I 5 HOH B 40 640 218 HOH HOH . I 5 HOH B 41 641 9 HOH HOH . I 5 HOH B 42 642 17 HOH HOH . I 5 HOH B 43 643 75 HOH HOH . I 5 HOH B 44 644 214 HOH HOH . I 5 HOH B 45 645 32 HOH HOH . I 5 HOH B 46 646 14 HOH HOH . I 5 HOH B 47 647 26 HOH HOH . I 5 HOH B 48 648 47 HOH HOH . I 5 HOH B 49 649 140 HOH HOH . I 5 HOH B 50 650 138 HOH HOH . I 5 HOH B 51 651 39 HOH HOH . I 5 HOH B 52 652 62 HOH HOH . I 5 HOH B 53 653 78 HOH HOH . I 5 HOH B 54 654 237 HOH HOH . I 5 HOH B 55 655 164 HOH HOH . I 5 HOH B 56 656 87 HOH HOH . I 5 HOH B 57 657 88 HOH HOH . I 5 HOH B 58 658 89 HOH HOH . I 5 HOH B 59 659 227 HOH HOH . I 5 HOH B 60 660 94 HOH HOH . I 5 HOH B 61 661 73 HOH HOH . I 5 HOH B 62 662 36 HOH HOH . I 5 HOH B 63 663 239 HOH HOH . I 5 HOH B 64 664 281 HOH HOH . I 5 HOH B 65 665 168 HOH HOH . I 5 HOH B 66 666 262 HOH HOH . I 5 HOH B 67 667 53 HOH HOH . I 5 HOH B 68 668 55 HOH HOH . I 5 HOH B 69 669 96 HOH HOH . I 5 HOH B 70 670 100 HOH HOH . I 5 HOH B 71 671 45 HOH HOH . I 5 HOH B 72 672 290 HOH HOH . I 5 HOH B 73 673 67 HOH HOH . I 5 HOH B 74 674 31 HOH HOH . I 5 HOH B 75 675 21 HOH HOH . I 5 HOH B 76 676 15 HOH HOH . I 5 HOH B 77 677 86 HOH HOH . I 5 HOH B 78 678 68 HOH HOH . I 5 HOH B 79 679 129 HOH HOH . I 5 HOH B 80 680 158 HOH HOH . I 5 HOH B 81 681 136 HOH HOH . I 5 HOH B 82 682 175 HOH HOH . I 5 HOH B 83 683 287 HOH HOH . I 5 HOH B 84 684 93 HOH HOH . I 5 HOH B 85 685 283 HOH HOH . I 5 HOH B 86 686 135 HOH HOH . I 5 HOH B 87 687 167 HOH HOH . I 5 HOH B 88 688 160 HOH HOH . I 5 HOH B 89 689 2 HOH HOH . I 5 HOH B 90 690 123 HOH HOH . I 5 HOH B 91 691 220 HOH HOH . I 5 HOH B 92 692 106 HOH HOH . I 5 HOH B 93 693 293 HOH HOH . I 5 HOH B 94 694 50 HOH HOH . I 5 HOH B 95 695 124 HOH HOH . I 5 HOH B 96 696 7 HOH HOH . I 5 HOH B 97 697 70 HOH HOH . I 5 HOH B 98 698 292 HOH HOH . I 5 HOH B 99 699 223 HOH HOH . I 5 HOH B 100 700 285 HOH HOH . I 5 HOH B 101 701 215 HOH HOH . I 5 HOH B 102 702 122 HOH HOH . I 5 HOH B 103 703 120 HOH HOH . I 5 HOH B 104 704 286 HOH HOH . I 5 HOH B 105 705 121 HOH HOH . I 5 HOH B 106 706 289 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . G 3 -19.676 4.232 -22.255 1 41.17 ? N1 IMD 501 B 1 HETATM 2 C C2 IMD . . . G 3 -20.918 3.649 -22.158 1 40.52 ? C2 IMD 501 B 1 HETATM 3 N N3 IMD . . . G 3 -21.824 4.623 -22.132 1 47.32 ? N3 IMD 501 B 1 HETATM 4 C C4 IMD . . . G 3 -21.185 5.827 -22.194 1 45.73 ? C4 IMD 501 B 1 HETATM 5 C C5 IMD . . . G 3 -19.848 5.578 -22.271 1 48.14 ? C5 IMD 501 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #