data_8QZZ # _model_server_result.job_id fDb1O5fpBz5ZeWfvSt3ePg _model_server_result.datetime_utc '2024-10-11 06:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8QZZ # _exptl.entry_id 8QZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QZZ _cell.length_a 120.594 _cell.length_b 120.594 _cell.length_c 158.259 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 8QZZ _atom_sites.fract_transf_matrix[1][1] 0.008292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id GNP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id GNP _pdbx_nonpoly_scheme.auth_mon_id GNP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . D 4 -30.761 2.632 -31.667 1 193.63 ? PG GNP 501 A 1 HETATM 2 O O1G GNP . . . D 4 -29.669 1.665 -32.124 1 177.32 ? O1G GNP 501 A 1 HETATM 3 O O2G GNP . . . D 4 -30.356 4.12 -31.399 1 124.38 ? O2G GNP 501 A 1 HETATM 4 O O3G GNP . . . D 4 -31.418 1.984 -30.433 1 145.17 ? O3G GNP 501 A 1 HETATM 5 N N3B GNP . . . D 4 -31.785 2.654 -32.926 1 134.09 ? N3B GNP 501 A 1 HETATM 6 P PB GNP . . . D 4 -32.974 3.737 -32.919 1 156.19 ? PB GNP 501 A 1 HETATM 7 O O1B GNP . . . D 4 -34.072 3.077 -32.122 1 97.2 ? O1B GNP 501 A 1 HETATM 8 O O2B GNP . . . D 4 -32.355 5.003 -32.367 1 180.8 ? O2B GNP 501 A 1 HETATM 9 O O3A GNP . . . D 4 -33.506 4.102 -34.416 1 122.3 ? O3A GNP 501 A 1 HETATM 10 P PA GNP . . . D 4 -33.399 3.308 -35.812 1 171.94 ? PA GNP 501 A 1 HETATM 11 O O1A GNP . . . D 4 -32.144 2.506 -35.77 1 201.64 ? O1A GNP 501 A 1 HETATM 12 O O2A GNP . . . D 4 -34.652 2.56 -36.152 1 161.35 ? O2A GNP 501 A 1 HETATM 13 O O5' GNP . . . D 4 -33.213 4.49 -36.875 1 203.5 ? O5' GNP 501 A 1 HETATM 14 C C5' GNP . . . D 4 -32.881 4.239 -38.284 1 255.05 ? C5' GNP 501 A 1 HETATM 15 C C4' GNP . . . D 4 -33.204 2.827 -38.728 1 254.43 ? C4' GNP 501 A 1 HETATM 16 O O4' GNP . . . D 4 -34.64 2.6 -38.818 1 181.16 ? O4' GNP 501 A 1 HETATM 17 C C3' GNP . . . D 4 -32.642 2.473 -40.115 1 262.35 ? C3' GNP 501 A 1 HETATM 18 O O3' GNP . . . D 4 -31.543 1.577 -40.003 1 349.92 ? O3' GNP 501 A 1 HETATM 19 C C2' GNP . . . D 4 -33.823 1.86 -40.879 1 218.97 ? C2' GNP 501 A 1 HETATM 20 O O2' GNP . . . D 4 -33.466 0.711 -41.619 1 197.97 ? O2' GNP 501 A 1 HETATM 21 C C1' GNP . . . D 4 -34.846 1.586 -39.772 1 189.08 ? C1' GNP 501 A 1 HETATM 22 N N9 GNP . . . D 4 -36.201 1.651 -40.303 1 215.44 ? N9 GNP 501 A 1 HETATM 23 C C8 GNP . . . D 4 -36.677 0.876 -41.335 1 264.01 ? C8 GNP 501 A 1 HETATM 24 N N7 GNP . . . D 4 -37.907 1.167 -41.683 1 261.08 ? N7 GNP 501 A 1 HETATM 25 C C5 GNP . . . D 4 -38.257 2.224 -40.846 1 233.91 ? C5 GNP 501 A 1 HETATM 26 C C6 GNP . . . D 4 -39.472 2.96 -40.746 1 178.77 ? C6 GNP 501 A 1 HETATM 27 O O6 GNP . . . D 4 -40.503 2.845 -41.405 1 163.37 ? O6 GNP 501 A 1 HETATM 28 N N1 GNP . . . D 4 -39.434 3.93 -39.761 1 122.18 ? N1 GNP 501 A 1 HETATM 29 C C2 GNP . . . D 4 -38.341 4.168 -38.974 1 163.62 ? C2 GNP 501 A 1 HETATM 30 N N2 GNP . . . D 4 -38.466 5.151 -38.083 1 200.02 ? N2 GNP 501 A 1 HETATM 31 N N3 GNP . . . D 4 -37.195 3.487 -39.043 1 165.67 ? N3 GNP 501 A 1 HETATM 32 C C4 GNP . . . D 4 -37.215 2.532 -39.997 1 200.54 ? C4 GNP 501 A 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #