data_8R0W # _model_server_result.job_id N4ZU1KdpsO9PRI3VAp8I-A _model_server_result.datetime_utc '2024-11-18 00:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8R0W # _exptl.entry_id 8R0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8R0W _cell.length_a 96.241 _cell.length_b 96.241 _cell.length_c 79.837 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 261 A SER 260 1_555 A N SEP 262 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 262 A SEP 261 1_555 A N GLU 263 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8R0W _atom_sites.fract_transf_matrix[1][1] 0.010391 _atom_sites.fract_transf_matrix[1][2] 0.005999 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 401 1 EDO EDO . D 4 GOL A 1 402 1 GOL GOL . E 4 GOL A 1 403 2 GOL GOL . F 4 GOL A 1 404 3 GOL GOL . G 5 XGF A 1 405 1 XGF dp5 . H 6 HOH A 1 501 187 HOH HOH . H 6 HOH A 2 502 41 HOH HOH . H 6 HOH A 3 503 90 HOH HOH . H 6 HOH A 4 504 21 HOH HOH . H 6 HOH A 5 505 179 HOH HOH . H 6 HOH A 6 506 153 HOH HOH . H 6 HOH A 7 507 48 HOH HOH . H 6 HOH A 8 508 88 HOH HOH . H 6 HOH A 9 509 86 HOH HOH . H 6 HOH A 10 510 78 HOH HOH . H 6 HOH A 11 511 82 HOH HOH . H 6 HOH A 12 512 166 HOH HOH . H 6 HOH A 13 513 137 HOH HOH . H 6 HOH A 14 514 133 HOH HOH . H 6 HOH A 15 515 117 HOH HOH . H 6 HOH A 16 516 105 HOH HOH . H 6 HOH A 17 517 155 HOH HOH . H 6 HOH A 18 518 60 HOH HOH . H 6 HOH A 19 519 134 HOH HOH . H 6 HOH A 20 520 3 HOH HOH . H 6 HOH A 21 521 67 HOH HOH . H 6 HOH A 22 522 39 HOH HOH . H 6 HOH A 23 523 30 HOH HOH . H 6 HOH A 24 524 6 HOH HOH . H 6 HOH A 25 525 122 HOH HOH . H 6 HOH A 26 526 17 HOH HOH . H 6 HOH A 27 527 74 HOH HOH . H 6 HOH A 28 528 42 HOH HOH . H 6 HOH A 29 529 38 HOH HOH . H 6 HOH A 30 530 149 HOH HOH . H 6 HOH A 31 531 99 HOH HOH . H 6 HOH A 32 532 91 HOH HOH . H 6 HOH A 33 533 80 HOH HOH . H 6 HOH A 34 534 125 HOH HOH . H 6 HOH A 35 535 4 HOH HOH . H 6 HOH A 36 536 44 HOH HOH . H 6 HOH A 37 537 22 HOH HOH . H 6 HOH A 38 538 20 HOH HOH . H 6 HOH A 39 539 156 HOH HOH . H 6 HOH A 40 540 142 HOH HOH . H 6 HOH A 41 541 46 HOH HOH . H 6 HOH A 42 542 131 HOH HOH . H 6 HOH A 43 543 108 HOH HOH . H 6 HOH A 44 544 31 HOH HOH . H 6 HOH A 45 545 52 HOH HOH . H 6 HOH A 46 546 53 HOH HOH . H 6 HOH A 47 547 61 HOH HOH . H 6 HOH A 48 548 71 HOH HOH . H 6 HOH A 49 549 55 HOH HOH . H 6 HOH A 50 550 171 HOH HOH . H 6 HOH A 51 551 92 HOH HOH . H 6 HOH A 52 552 13 HOH HOH . H 6 HOH A 53 553 161 HOH HOH . H 6 HOH A 54 554 168 HOH HOH . H 6 HOH A 55 555 102 HOH HOH . H 6 HOH A 56 556 70 HOH HOH . H 6 HOH A 57 557 124 HOH HOH . H 6 HOH A 58 558 2 HOH HOH . H 6 HOH A 59 559 154 HOH HOH . H 6 HOH A 60 560 129 HOH HOH . H 6 HOH A 61 561 40 HOH HOH . H 6 HOH A 62 562 62 HOH HOH . H 6 HOH A 63 563 28 HOH HOH . H 6 HOH A 64 564 37 HOH HOH . H 6 HOH A 65 565 147 HOH HOH . H 6 HOH A 66 566 25 HOH HOH . H 6 HOH A 67 567 176 HOH HOH . H 6 HOH A 68 568 12 HOH HOH . H 6 HOH A 69 569 114 HOH HOH . H 6 HOH A 70 570 65 HOH HOH . H 6 HOH A 71 571 120 HOH HOH . H 6 HOH A 72 572 116 HOH HOH . H 6 HOH A 73 573 158 HOH HOH . H 6 HOH A 74 574 50 HOH HOH . H 6 HOH A 75 575 32 HOH HOH . H 6 HOH A 76 576 29 HOH HOH . H 6 HOH A 77 577 14 HOH HOH . H 6 HOH A 78 578 173 HOH HOH . H 6 HOH A 79 579 170 HOH HOH . H 6 HOH A 80 580 45 HOH HOH . H 6 HOH A 81 581 24 HOH HOH . H 6 HOH A 82 582 5 HOH HOH . H 6 HOH A 83 583 81 HOH HOH . H 6 HOH A 84 584 148 HOH HOH . H 6 HOH A 85 585 107 HOH HOH . H 6 HOH A 86 586 185 HOH HOH . H 6 HOH A 87 587 18 HOH HOH . H 6 HOH A 88 588 85 HOH HOH . H 6 HOH A 89 589 97 HOH HOH . H 6 HOH A 90 590 58 HOH HOH . H 6 HOH A 91 591 51 HOH HOH . H 6 HOH A 92 592 19 HOH HOH . H 6 HOH A 93 593 109 HOH HOH . H 6 HOH A 94 594 1 HOH HOH . H 6 HOH A 95 595 146 HOH HOH . H 6 HOH A 96 596 36 HOH HOH . H 6 HOH A 97 597 174 HOH HOH . H 6 HOH A 98 598 104 HOH HOH . H 6 HOH A 99 599 113 HOH HOH . H 6 HOH A 100 600 110 HOH HOH . H 6 HOH A 101 601 123 HOH HOH . H 6 HOH A 102 602 72 HOH HOH . H 6 HOH A 103 603 139 HOH HOH . H 6 HOH A 104 604 100 HOH HOH . H 6 HOH A 105 605 26 HOH HOH . H 6 HOH A 106 606 126 HOH HOH . H 6 HOH A 107 607 106 HOH HOH . H 6 HOH A 108 608 57 HOH HOH . H 6 HOH A 109 609 101 HOH HOH . H 6 HOH A 110 610 95 HOH HOH . H 6 HOH A 111 611 59 HOH HOH . H 6 HOH A 112 612 141 HOH HOH . H 6 HOH A 113 613 84 HOH HOH . H 6 HOH A 114 614 87 HOH HOH . H 6 HOH A 115 615 79 HOH HOH . H 6 HOH A 116 616 10 HOH HOH . H 6 HOH A 117 617 33 HOH HOH . H 6 HOH A 118 618 23 HOH HOH . H 6 HOH A 119 619 8 HOH HOH . H 6 HOH A 120 620 121 HOH HOH . H 6 HOH A 121 621 143 HOH HOH . H 6 HOH A 122 622 172 HOH HOH . H 6 HOH A 123 623 83 HOH HOH . H 6 HOH A 124 624 138 HOH HOH . H 6 HOH A 125 625 64 HOH HOH . H 6 HOH A 126 626 7 HOH HOH . H 6 HOH A 127 627 69 HOH HOH . H 6 HOH A 128 628 16 HOH HOH . H 6 HOH A 129 629 96 HOH HOH . H 6 HOH A 130 630 49 HOH HOH . H 6 HOH A 131 631 127 HOH HOH . H 6 HOH A 132 632 27 HOH HOH . H 6 HOH A 133 633 115 HOH HOH . H 6 HOH A 134 634 130 HOH HOH . H 6 HOH A 135 635 15 HOH HOH . H 6 HOH A 136 636 98 HOH HOH . H 6 HOH A 137 637 112 HOH HOH . H 6 HOH A 138 638 181 HOH HOH . H 6 HOH A 139 639 68 HOH HOH . H 6 HOH A 140 640 135 HOH HOH . H 6 HOH A 141 641 167 HOH HOH . H 6 HOH A 142 642 9 HOH HOH . H 6 HOH A 143 643 162 HOH HOH . H 6 HOH A 144 644 75 HOH HOH . H 6 HOH A 145 645 183 HOH HOH . H 6 HOH A 146 646 157 HOH HOH . H 6 HOH A 147 647 63 HOH HOH . H 6 HOH A 148 648 128 HOH HOH . H 6 HOH A 149 649 186 HOH HOH . H 6 HOH A 150 650 151 HOH HOH . H 6 HOH A 151 651 178 HOH HOH . H 6 HOH A 152 652 184 HOH HOH . H 6 HOH A 153 653 188 HOH HOH . H 6 HOH A 154 654 35 HOH HOH . H 6 HOH A 155 655 164 HOH HOH . H 6 HOH A 156 656 119 HOH HOH . H 6 HOH A 157 657 160 HOH HOH . H 6 HOH A 158 658 182 HOH HOH . H 6 HOH A 159 659 34 HOH HOH . H 6 HOH A 160 660 73 HOH HOH . H 6 HOH A 161 661 165 HOH HOH . H 6 HOH A 162 662 94 HOH HOH . H 6 HOH A 163 663 111 HOH HOH . H 6 HOH A 164 664 66 HOH HOH . H 6 HOH A 165 665 152 HOH HOH . I 6 HOH B 1 101 77 HOH HOH . I 6 HOH B 2 102 76 HOH HOH . I 6 HOH B 3 103 43 HOH HOH . I 6 HOH B 4 104 136 HOH HOH . I 6 HOH B 5 105 54 HOH HOH . I 6 HOH B 6 106 118 HOH HOH . I 6 HOH B 7 107 169 HOH HOH . I 6 HOH B 8 108 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -58.393 -111.47 -0.834 0.82 52.4 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . D 4 -58.107 -112.559 -1.642 0.82 45.83 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . D 4 -59.784 -110.936 -1.234 0.82 48.62 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . D 4 -60.503 -111.776 -2.132 0.82 47.29 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . D 4 -60.507 -110.758 0.095 0.82 57.03 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . D 4 -61.152 -109.549 0.003 0.82 43.55 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #