data_8R0Y # _model_server_result.job_id Eu94UY6dG--pRYdAX-4poA _model_server_result.datetime_utc '2025-01-10 07:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8R0Y # _exptl.entry_id 8R0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8R0Y _cell.length_a 98.548 _cell.length_b 98.548 _cell.length_c 80.951 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 261 A SER 260 1_555 A N SEP 262 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 262 A SEP 261 1_555 A N GLU 263 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8R0Y _atom_sites.fract_transf_matrix[1][1] 0.010147 _atom_sites.fract_transf_matrix[1][2] 0.005859 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 4 XH3 A 1 402 1 XH3 md4 . E 5 HOH A 1 501 17 HOH HOH . E 5 HOH A 2 502 71 HOH HOH . E 5 HOH A 3 503 42 HOH HOH . E 5 HOH A 4 504 58 HOH HOH . E 5 HOH A 5 505 52 HOH HOH . E 5 HOH A 6 506 36 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 40 HOH HOH . E 5 HOH A 9 509 4 HOH HOH . E 5 HOH A 10 510 38 HOH HOH . E 5 HOH A 11 511 29 HOH HOH . E 5 HOH A 12 512 8 HOH HOH . E 5 HOH A 13 513 74 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 31 HOH HOH . E 5 HOH A 16 516 6 HOH HOH . E 5 HOH A 17 517 39 HOH HOH . E 5 HOH A 18 518 3 HOH HOH . E 5 HOH A 19 519 77 HOH HOH . E 5 HOH A 20 520 20 HOH HOH . E 5 HOH A 21 521 25 HOH HOH . E 5 HOH A 22 522 2 HOH HOH . E 5 HOH A 23 523 43 HOH HOH . E 5 HOH A 24 524 81 HOH HOH . E 5 HOH A 25 525 55 HOH HOH . E 5 HOH A 26 526 5 HOH HOH . E 5 HOH A 27 527 19 HOH HOH . E 5 HOH A 28 528 62 HOH HOH . E 5 HOH A 29 529 30 HOH HOH . E 5 HOH A 30 530 15 HOH HOH . E 5 HOH A 31 531 18 HOH HOH . E 5 HOH A 32 532 1 HOH HOH . E 5 HOH A 33 533 50 HOH HOH . E 5 HOH A 34 534 11 HOH HOH . E 5 HOH A 35 535 23 HOH HOH . E 5 HOH A 36 536 26 HOH HOH . E 5 HOH A 37 537 78 HOH HOH . E 5 HOH A 38 538 21 HOH HOH . E 5 HOH A 39 539 80 HOH HOH . E 5 HOH A 40 540 65 HOH HOH . E 5 HOH A 41 541 51 HOH HOH . E 5 HOH A 42 542 48 HOH HOH . E 5 HOH A 43 543 28 HOH HOH . E 5 HOH A 44 544 9 HOH HOH . E 5 HOH A 45 545 24 HOH HOH . E 5 HOH A 46 546 75 HOH HOH . E 5 HOH A 47 547 76 HOH HOH . E 5 HOH A 48 548 41 HOH HOH . E 5 HOH A 49 549 84 HOH HOH . E 5 HOH A 50 550 66 HOH HOH . E 5 HOH A 51 551 46 HOH HOH . E 5 HOH A 52 552 53 HOH HOH . E 5 HOH A 53 553 16 HOH HOH . E 5 HOH A 54 554 13 HOH HOH . E 5 HOH A 55 555 35 HOH HOH . E 5 HOH A 56 556 10 HOH HOH . E 5 HOH A 57 557 60 HOH HOH . E 5 HOH A 58 558 12 HOH HOH . E 5 HOH A 59 559 44 HOH HOH . E 5 HOH A 60 560 69 HOH HOH . E 5 HOH A 61 561 37 HOH HOH . E 5 HOH A 62 562 82 HOH HOH . E 5 HOH A 63 563 54 HOH HOH . E 5 HOH A 64 564 67 HOH HOH . E 5 HOH A 65 565 27 HOH HOH . E 5 HOH A 66 566 45 HOH HOH . E 5 HOH A 67 567 73 HOH HOH . E 5 HOH A 68 568 85 HOH HOH . E 5 HOH A 69 569 33 HOH HOH . E 5 HOH A 70 570 83 HOH HOH . F 5 HOH B 1 101 49 HOH HOH . F 5 HOH B 2 102 79 HOH HOH . F 5 HOH B 3 103 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 140.057 -4.003 -3.408 0.97 54.51 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 141.05 -3.849 -4.412 0.97 57.72 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 138.781 -4.455 -4.164 0.97 56.92 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 138.997 -5.626 -4.877 0.97 52.77 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 137.684 -4.623 -3.092 0.97 58.39 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 136.544 -5.076 -3.778 0.97 62.51 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #