data_8R15
#
_model_server_result.job_id            BYYZ3KM1ghgFCo-LgnlByQ 
_model_server_result.datetime_utc      '2024-10-10 08:20:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r15 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8R15 
#
_exptl.entry_id    8R15 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8R15 
_cell.length_a            83.06 
_cell.length_b            83.06 
_cell.length_c            57.964 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R15 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 38.642667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 305 NAG 
2 n B NAG 2 B 2 NAG A 306 NAG 
2 n B BMA 3 B 3 BMA A 307 BMA 
2 n B MAN 4 B 4 MAN A 309 MAN 
2 n B MAN 5 B 5 MAN A 308 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 223 A CYS 223 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 32 A CYS 32 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 110 A ASN 110 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale4 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     8R15 
_atom_sites.fract_transf_matrix[1][1]    0.012039 
_atom_sites.fract_transf_matrix[1][2]    0.006951 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017252 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 301 304 GOL GOL . 
D 4 HOH A 1 401 25 HOH HOH . 
D 4 HOH A 2 402 32 HOH HOH . 
D 4 HOH A 3 403 59 HOH HOH . 
D 4 HOH A 4 404 13 HOH HOH . 
D 4 HOH A 5 405 4 HOH HOH . 
D 4 HOH A 6 406 12 HOH HOH . 
D 4 HOH A 7 407 1 HOH HOH . 
D 4 HOH A 8 408 8 HOH HOH . 
D 4 HOH A 9 409 16 HOH HOH . 
D 4 HOH A 10 410 31 HOH HOH . 
D 4 HOH A 11 411 7 HOH HOH . 
D 4 HOH A 12 412 23 HOH HOH . 
D 4 HOH A 13 413 34 HOH HOH . 
D 4 HOH A 14 414 19 HOH HOH . 
D 4 HOH A 15 415 40 HOH HOH . 
D 4 HOH A 16 416 18 HOH HOH . 
D 4 HOH A 17 417 10 HOH HOH . 
D 4 HOH A 18 418 5 HOH HOH . 
D 4 HOH A 19 419 11 HOH HOH . 
D 4 HOH A 20 420 14 HOH HOH . 
D 4 HOH A 21 421 44 HOH HOH . 
D 4 HOH A 22 422 3 HOH HOH . 
D 4 HOH A 23 423 2 HOH HOH . 
D 4 HOH A 24 424 9 HOH HOH . 
D 4 HOH A 25 425 76 HOH HOH . 
D 4 HOH A 26 426 17 HOH HOH . 
D 4 HOH A 27 427 37 HOH HOH . 
D 4 HOH A 28 428 27 HOH HOH . 
D 4 HOH A 29 429 15 HOH HOH . 
D 4 HOH A 30 430 36 HOH HOH . 
D 4 HOH A 31 431 35 HOH HOH . 
D 4 HOH A 32 432 6 HOH HOH . 
D 4 HOH A 33 433 38 HOH HOH . 
D 4 HOH A 34 434 29 HOH HOH . 
D 4 HOH A 35 435 47 HOH HOH . 
D 4 HOH A 36 436 24 HOH HOH . 
D 4 HOH A 37 437 20 HOH HOH . 
D 4 HOH A 38 438 26 HOH HOH . 
D 4 HOH A 39 439 33 HOH HOH . 
D 4 HOH A 40 440 21 HOH HOH . 
D 4 HOH A 41 441 63 HOH HOH . 
D 4 HOH A 42 442 22 HOH HOH . 
D 4 HOH A 43 443 50 HOH HOH . 
D 4 HOH A 44 444 67 HOH HOH . 
D 4 HOH A 45 445 56 HOH HOH . 
D 4 HOH A 46 446 51 HOH HOH . 
D 4 HOH A 47 447 28 HOH HOH . 
D 4 HOH A 48 448 30 HOH HOH . 
D 4 HOH A 49 449 53 HOH HOH . 
D 4 HOH A 50 450 74 HOH HOH . 
D 4 HOH A 51 451 52 HOH HOH . 
D 4 HOH A 52 452 79 HOH HOH . 
D 4 HOH A 53 453 78 HOH HOH . 
D 4 HOH A 54 454 77 HOH HOH . 
D 4 HOH A 55 455 57 HOH HOH . 
D 4 HOH A 56 456 70 HOH HOH . 
D 4 HOH A 57 457 41 HOH HOH . 
D 4 HOH A 58 458 80 HOH HOH . 
D 4 HOH A 59 459 75 HOH HOH . 
D 4 HOH A 60 460 69 HOH HOH . 
D 4 HOH A 61 461 71 HOH HOH . 
D 4 HOH A 62 462 68 HOH HOH . 
D 4 HOH A 63 463 64 HOH HOH . 
D 4 HOH A 64 464 73 HOH HOH . 
D 4 HOH A 65 465 72 HOH HOH . 
D 4 HOH A 66 466 65 HOH HOH . 
D 4 HOH A 67 467 42 HOH HOH . 
D 4 HOH A 68 468 66 HOH HOH . 
D 4 HOH A 69 469 60 HOH HOH . 
D 4 HOH A 70 470 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 21.418 -33.518 6.842 1 58.61 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . C 3 21.776 -32.438 6.009 1 58.17 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . C 3 20.377 -34.402 6.169 1 60.11 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . C 3 19.146 -33.731 6.298 1 67.19 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . C 3 20.732 -34.681 4.705 1 64.42 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . C 3 20.086 -35.856 4.251 1 56.6 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#