data_8R18 # _model_server_result.job_id 58omOB0UMbwHXWaxQu90ug _model_server_result.datetime_utc '2024-10-17 11:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8R18 # _exptl.entry_id 8R18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8R18 _cell.length_a 96.507 _cell.length_b 96.507 _cell.length_c 80.201 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 261 A SER 260 1_555 A N SEP 262 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 262 A SEP 261 1_555 A N GLU 263 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8R18 _atom_sites.fract_transf_matrix[1][1] 0.010362 _atom_sites.fract_transf_matrix[1][2] 0.005982 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 4 XGK A 1 402 1 XGK 331 . E 5 EDO A 1 403 1 EDO EDO . F 6 HOH A 1 501 164 HOH HOH . F 6 HOH A 2 502 159 HOH HOH . F 6 HOH A 3 503 68 HOH HOH . F 6 HOH A 4 504 112 HOH HOH . F 6 HOH A 5 505 92 HOH HOH . F 6 HOH A 6 506 84 HOH HOH . F 6 HOH A 7 507 25 HOH HOH . F 6 HOH A 8 508 109 HOH HOH . F 6 HOH A 9 509 145 HOH HOH . F 6 HOH A 10 510 125 HOH HOH . F 6 HOH A 11 511 120 HOH HOH . F 6 HOH A 12 512 83 HOH HOH . F 6 HOH A 13 513 95 HOH HOH . F 6 HOH A 14 514 42 HOH HOH . F 6 HOH A 15 515 62 HOH HOH . F 6 HOH A 16 516 106 HOH HOH . F 6 HOH A 17 517 153 HOH HOH . F 6 HOH A 18 518 140 HOH HOH . F 6 HOH A 19 519 89 HOH HOH . F 6 HOH A 20 520 65 HOH HOH . F 6 HOH A 21 521 141 HOH HOH . F 6 HOH A 22 522 123 HOH HOH . F 6 HOH A 23 523 105 HOH HOH . F 6 HOH A 24 524 66 HOH HOH . F 6 HOH A 25 525 151 HOH HOH . F 6 HOH A 26 526 201 HOH HOH . F 6 HOH A 27 527 191 HOH HOH . F 6 HOH A 28 528 51 HOH HOH . F 6 HOH A 29 529 60 HOH HOH . F 6 HOH A 30 530 186 HOH HOH . F 6 HOH A 31 531 61 HOH HOH . F 6 HOH A 32 532 161 HOH HOH . F 6 HOH A 33 533 91 HOH HOH . F 6 HOH A 34 534 173 HOH HOH . F 6 HOH A 35 535 10 HOH HOH . F 6 HOH A 36 536 122 HOH HOH . F 6 HOH A 37 537 196 HOH HOH . F 6 HOH A 38 538 108 HOH HOH . F 6 HOH A 39 539 113 HOH HOH . F 6 HOH A 40 540 17 HOH HOH . F 6 HOH A 41 541 155 HOH HOH . F 6 HOH A 42 542 29 HOH HOH . F 6 HOH A 43 543 30 HOH HOH . F 6 HOH A 44 544 211 HOH HOH . F 6 HOH A 45 545 107 HOH HOH . F 6 HOH A 46 546 31 HOH HOH . F 6 HOH A 47 547 179 HOH HOH . F 6 HOH A 48 548 132 HOH HOH . F 6 HOH A 49 549 192 HOH HOH . F 6 HOH A 50 550 40 HOH HOH . F 6 HOH A 51 551 93 HOH HOH . F 6 HOH A 52 552 185 HOH HOH . F 6 HOH A 53 553 7 HOH HOH . F 6 HOH A 54 554 160 HOH HOH . F 6 HOH A 55 555 209 HOH HOH . F 6 HOH A 56 556 78 HOH HOH . F 6 HOH A 57 557 130 HOH HOH . F 6 HOH A 58 558 32 HOH HOH . F 6 HOH A 59 559 168 HOH HOH . F 6 HOH A 60 560 39 HOH HOH . F 6 HOH A 61 561 34 HOH HOH . F 6 HOH A 62 562 150 HOH HOH . F 6 HOH A 63 563 15 HOH HOH . F 6 HOH A 64 564 43 HOH HOH . F 6 HOH A 65 565 77 HOH HOH . F 6 HOH A 66 566 190 HOH HOH . F 6 HOH A 67 567 20 HOH HOH . F 6 HOH A 68 568 11 HOH HOH . F 6 HOH A 69 569 44 HOH HOH . F 6 HOH A 70 570 76 HOH HOH . F 6 HOH A 71 571 9 HOH HOH . F 6 HOH A 72 572 22 HOH HOH . F 6 HOH A 73 573 124 HOH HOH . F 6 HOH A 74 574 193 HOH HOH . F 6 HOH A 75 575 175 HOH HOH . F 6 HOH A 76 576 100 HOH HOH . F 6 HOH A 77 577 46 HOH HOH . F 6 HOH A 78 578 55 HOH HOH . F 6 HOH A 79 579 146 HOH HOH . F 6 HOH A 80 580 116 HOH HOH . F 6 HOH A 81 581 121 HOH HOH . F 6 HOH A 82 582 148 HOH HOH . F 6 HOH A 83 583 163 HOH HOH . F 6 HOH A 84 584 73 HOH HOH . F 6 HOH A 85 585 88 HOH HOH . F 6 HOH A 86 586 57 HOH HOH . F 6 HOH A 87 587 182 HOH HOH . F 6 HOH A 88 588 35 HOH HOH . F 6 HOH A 89 589 12 HOH HOH . F 6 HOH A 90 590 48 HOH HOH . F 6 HOH A 91 591 24 HOH HOH . F 6 HOH A 92 592 181 HOH HOH . F 6 HOH A 93 593 71 HOH HOH . F 6 HOH A 94 594 158 HOH HOH . F 6 HOH A 95 595 37 HOH HOH . F 6 HOH A 96 596 21 HOH HOH . F 6 HOH A 97 597 137 HOH HOH . F 6 HOH A 98 598 47 HOH HOH . F 6 HOH A 99 599 26 HOH HOH . F 6 HOH A 100 600 149 HOH HOH . F 6 HOH A 101 601 194 HOH HOH . F 6 HOH A 102 602 208 HOH HOH . F 6 HOH A 103 603 86 HOH HOH . F 6 HOH A 104 604 104 HOH HOH . F 6 HOH A 105 605 143 HOH HOH . F 6 HOH A 106 606 101 HOH HOH . F 6 HOH A 107 607 117 HOH HOH . F 6 HOH A 108 608 50 HOH HOH . F 6 HOH A 109 609 59 HOH HOH . F 6 HOH A 110 610 200 HOH HOH . F 6 HOH A 111 611 33 HOH HOH . F 6 HOH A 112 612 70 HOH HOH . F 6 HOH A 113 613 23 HOH HOH . F 6 HOH A 114 614 136 HOH HOH . F 6 HOH A 115 615 52 HOH HOH . F 6 HOH A 116 616 16 HOH HOH . F 6 HOH A 117 617 56 HOH HOH . F 6 HOH A 118 618 74 HOH HOH . F 6 HOH A 119 619 90 HOH HOH . F 6 HOH A 120 620 72 HOH HOH . F 6 HOH A 121 621 119 HOH HOH . F 6 HOH A 122 622 28 HOH HOH . F 6 HOH A 123 623 167 HOH HOH . F 6 HOH A 124 624 96 HOH HOH . F 6 HOH A 125 625 166 HOH HOH . F 6 HOH A 126 626 154 HOH HOH . F 6 HOH A 127 627 1 HOH HOH . F 6 HOH A 128 628 85 HOH HOH . F 6 HOH A 129 629 8 HOH HOH . F 6 HOH A 130 630 204 HOH HOH . F 6 HOH A 131 631 184 HOH HOH . F 6 HOH A 132 632 103 HOH HOH . F 6 HOH A 133 633 67 HOH HOH . F 6 HOH A 134 634 135 HOH HOH . F 6 HOH A 135 635 27 HOH HOH . F 6 HOH A 136 636 205 HOH HOH . F 6 HOH A 137 637 170 HOH HOH . F 6 HOH A 138 638 49 HOH HOH . F 6 HOH A 139 639 82 HOH HOH . F 6 HOH A 140 640 94 HOH HOH . F 6 HOH A 141 641 63 HOH HOH . F 6 HOH A 142 642 111 HOH HOH . F 6 HOH A 143 643 58 HOH HOH . F 6 HOH A 144 644 13 HOH HOH . F 6 HOH A 145 645 198 HOH HOH . F 6 HOH A 146 646 75 HOH HOH . F 6 HOH A 147 647 133 HOH HOH . F 6 HOH A 148 648 199 HOH HOH . F 6 HOH A 149 649 169 HOH HOH . F 6 HOH A 150 650 144 HOH HOH . F 6 HOH A 151 651 102 HOH HOH . F 6 HOH A 152 652 87 HOH HOH . F 6 HOH A 153 653 127 HOH HOH . F 6 HOH A 154 654 210 HOH HOH . F 6 HOH A 155 655 165 HOH HOH . F 6 HOH A 156 656 206 HOH HOH . F 6 HOH A 157 657 188 HOH HOH . F 6 HOH A 158 658 202 HOH HOH . F 6 HOH A 159 659 176 HOH HOH . F 6 HOH A 160 660 177 HOH HOH . F 6 HOH A 161 661 45 HOH HOH . F 6 HOH A 162 662 99 HOH HOH . F 6 HOH A 163 663 207 HOH HOH . F 6 HOH A 164 664 187 HOH HOH . F 6 HOH A 165 665 180 HOH HOH . F 6 HOH A 166 666 134 HOH HOH . F 6 HOH A 167 667 183 HOH HOH . F 6 HOH A 168 668 64 HOH HOH . F 6 HOH A 169 669 98 HOH HOH . F 6 HOH A 170 670 174 HOH HOH . F 6 HOH A 171 671 171 HOH HOH . F 6 HOH A 172 672 152 HOH HOH . F 6 HOH A 173 673 147 HOH HOH . F 6 HOH A 174 674 203 HOH HOH . G 6 HOH C 1 101 128 HOH HOH . G 6 HOH C 2 102 38 HOH HOH . G 6 HOH C 3 103 36 HOH HOH . G 6 HOH C 4 104 138 HOH HOH . G 6 HOH C 5 105 139 HOH HOH . G 6 HOH C 6 106 172 HOH HOH . G 6 HOH C 7 107 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 180.218 78.071 -16.894 0.93 55.64 ? C1 EDO 403 A 1 HETATM 2 O O1 EDO . . . E 5 181.55 78.079 -16.366 0.93 62.8 ? O1 EDO 403 A 1 HETATM 3 C C2 EDO . . . E 5 179.369 77.144 -16.037 0.93 55.76 ? C2 EDO 403 A 1 HETATM 4 O O2 EDO . . . E 5 180.146 75.98 -15.727 0.93 63.5 ? O2 EDO 403 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #