data_8R1P # _model_server_result.job_id MkK0Z8YdTaJDTiueO_qh0Q _model_server_result.datetime_utc '2024-12-02 02:46:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8R1P # _exptl.entry_id 8R1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.269 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(4-aminostyryl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8R1P _cell.length_a 97.313 _cell.length_b 97.313 _cell.length_c 80.837 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 261 A SER 260 1_555 A N SEP 262 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 262 A SEP 261 1_555 A N GLU 263 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C15 H13 N O2' _chem_comp.formula_weight 239.269 _chem_comp.id XIP _chem_comp.mon_nstd_flag . _chem_comp.name '4-(4-aminostyryl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-[2-(4-aminophenyl)ethenyl]benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C XIP sing 394 n n C C1 XIP doub 395 n y C1 C2 XIP sing 396 n y C2 C3 XIP doub 397 n y C3 C4 XIP sing 398 n n C4 C5 XIP doub 399 z n C5 C6 XIP sing 400 n n C6 C7 XIP doub 401 n y C7 C8 XIP sing 402 n y C8 C9 XIP doub 403 n y C9 C10 XIP sing 404 n n O C10 XIP sing 405 n n C10 O1 XIP doub 406 n n C11 C9 XIP sing 407 n y C12 C11 XIP doub 408 n y C6 C12 XIP sing 409 n y C13 C3 XIP sing 410 n y C14 C13 XIP doub 411 n y C C14 XIP sing 412 n y C1 H2 XIP sing 413 n n C4 H4 XIP sing 414 n n C13 H11 XIP sing 415 n n C14 H12 XIP sing 416 n n N H XIP sing 417 n n N H1 XIP sing 418 n n O H8 XIP sing 419 n n C11 H9 XIP sing 420 n n C12 H10 XIP sing 421 n n C2 H3 XIP sing 422 n n C5 H5 XIP sing 423 n n C7 H6 XIP sing 424 n n C8 H7 XIP sing 425 n n # _atom_sites.entry_id 8R1P _atom_sites.fract_transf_matrix[1][1] 0.010276 _atom_sites.fract_transf_matrix[1][2] 0.005933 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 XIP A 1 401 1 XIP 599 . D 4 HOH A 1 501 62 HOH HOH . D 4 HOH A 2 502 20 HOH HOH . D 4 HOH A 3 503 37 HOH HOH . D 4 HOH A 4 504 35 HOH HOH . D 4 HOH A 5 505 34 HOH HOH . D 4 HOH A 6 506 17 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 66 HOH HOH . D 4 HOH A 9 509 31 HOH HOH . D 4 HOH A 10 510 22 HOH HOH . D 4 HOH A 11 511 32 HOH HOH . D 4 HOH A 12 512 13 HOH HOH . D 4 HOH A 13 513 41 HOH HOH . D 4 HOH A 14 514 33 HOH HOH . D 4 HOH A 15 515 50 HOH HOH . D 4 HOH A 16 516 10 HOH HOH . D 4 HOH A 17 517 26 HOH HOH . D 4 HOH A 18 518 64 HOH HOH . D 4 HOH A 19 519 2 HOH HOH . D 4 HOH A 20 520 45 HOH HOH . D 4 HOH A 21 521 44 HOH HOH . D 4 HOH A 22 522 23 HOH HOH . D 4 HOH A 23 523 54 HOH HOH . D 4 HOH A 24 524 39 HOH HOH . D 4 HOH A 25 525 5 HOH HOH . D 4 HOH A 26 526 12 HOH HOH . D 4 HOH A 27 527 48 HOH HOH . D 4 HOH A 28 528 30 HOH HOH . D 4 HOH A 29 529 51 HOH HOH . D 4 HOH A 30 530 52 HOH HOH . D 4 HOH A 31 531 9 HOH HOH . D 4 HOH A 32 532 15 HOH HOH . D 4 HOH A 33 533 56 HOH HOH . D 4 HOH A 34 534 25 HOH HOH . D 4 HOH A 35 535 53 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 49 HOH HOH . D 4 HOH A 38 538 18 HOH HOH . D 4 HOH A 39 539 11 HOH HOH . D 4 HOH A 40 540 16 HOH HOH . D 4 HOH A 41 541 57 HOH HOH . D 4 HOH A 42 542 63 HOH HOH . D 4 HOH A 43 543 61 HOH HOH . D 4 HOH A 44 544 40 HOH HOH . D 4 HOH A 45 545 43 HOH HOH . D 4 HOH A 46 546 55 HOH HOH . D 4 HOH A 47 547 71 HOH HOH . D 4 HOH A 48 548 58 HOH HOH . D 4 HOH A 49 549 38 HOH HOH . D 4 HOH A 50 550 28 HOH HOH . D 4 HOH A 51 551 27 HOH HOH . D 4 HOH A 52 552 67 HOH HOH . D 4 HOH A 53 553 21 HOH HOH . D 4 HOH A 54 554 8 HOH HOH . D 4 HOH A 55 555 70 HOH HOH . D 4 HOH A 56 556 72 HOH HOH . D 4 HOH A 57 557 68 HOH HOH . D 4 HOH A 58 558 69 HOH HOH . D 4 HOH A 59 559 24 HOH HOH . E 4 HOH C 1 101 60 HOH HOH . E 4 HOH C 2 102 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XIP . . . C 3 -140.425 2.558 -1.828 1 45.29 ? C1 XIP 401 A 1 HETATM 2 C C3 XIP . . . C 3 -141.615 1.183 -0.227 1 43.79 ? C3 XIP 401 A 1 HETATM 3 C C4 XIP . . . C 3 -141.854 0.73 1.151 1 45.06 ? C4 XIP 401 A 1 HETATM 4 C C6 XIP . . . C 3 -139.906 1.446 2.652 1 38.28 ? C6 XIP 401 A 1 HETATM 5 C C13 XIP . . . C 3 -142.476 0.791 -1.256 1 47.76 ? C13 XIP 401 A 1 HETATM 6 C C14 XIP . . . C 3 -142.327 1.277 -2.545 1 47.81 ? C14 XIP 401 A 1 HETATM 7 N N XIP . . . C 3 -141.111 2.623 -4.147 1 42.61 ? N XIP 401 A 1 HETATM 8 C C XIP . . . C 3 -141.289 2.162 -2.856 1 46.73 ? C XIP 401 A 1 HETATM 9 O O XIP . . . C 3 -136.051 3.51 4.974 1 34.46 ? O XIP 401 A 1 HETATM 10 C C10 XIP . . . C 3 -136.017 2.834 3.864 1 38.57 ? C10 XIP 401 A 1 HETATM 11 C C11 XIP . . . C 3 -137.525 1.629 2.249 1 39.36 ? C11 XIP 401 A 1 HETATM 12 C C12 XIP . . . C 3 -138.784 1.206 1.856 1 38.19 ? C12 XIP 401 A 1 HETATM 13 C C2 XIP . . . C 3 -140.598 2.083 -0.539 1 42.24 ? C2 XIP 401 A 1 HETATM 14 C C5 XIP . . . C 3 -141.299 1.208 2.259 1 45.43 ? C5 XIP 401 A 1 HETATM 15 C C7 XIP . . . C 3 -139.706 2.064 3.883 1 38.09 ? C7 XIP 401 A 1 HETATM 16 C C8 XIP . . . C 3 -138.452 2.494 4.275 1 39.76 ? C8 XIP 401 A 1 HETATM 17 C C9 XIP . . . C 3 -137.346 2.299 3.455 1 38.42 ? C9 XIP 401 A 1 HETATM 18 O O1 XIP . . . C 3 -134.991 2.641 3.214 1 37.16 ? O1 XIP 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #