data_8R1T # _model_server_result.job_id d_7cwcKtrYiTYBF00DAhnA _model_server_result.datetime_utc '2024-12-02 02:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8R1T # _exptl.entry_id 8R1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.285 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(4-aminophenethyl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8R1T _cell.length_a 97.007 _cell.length_b 97.007 _cell.length_c 80.295 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 261 A SER 260 1_555 A N SEP 262 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 262 A SEP 261 1_555 A N GLU 263 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C15 H15 N O2' _chem_comp.formula_weight 241.285 _chem_comp.id XIJ _chem_comp.mon_nstd_flag . _chem_comp.name '4-(4-aminophenethyl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-[2-(4-aminophenyl)ethyl]benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C XIJ sing 407 n n C C1 XIJ doub 408 n y C1 C2 XIJ sing 409 n y C2 C3 XIJ doub 410 n y C3 C4 XIJ sing 411 n n C4 C5 XIJ sing 412 n n C5 C6 XIJ sing 413 n n C6 C7 XIJ doub 414 n y C7 C8 XIJ sing 415 n y C8 C9 XIJ doub 416 n y C9 C10 XIJ sing 417 n n O C10 XIJ sing 418 n n C10 O1 XIJ doub 419 n n C11 C9 XIJ sing 420 n y C12 C11 XIJ doub 421 n y C6 C12 XIJ sing 422 n y C13 C3 XIJ sing 423 n y C14 C13 XIJ doub 424 n y C C14 XIJ sing 425 n y C2 H3 XIJ sing 426 n n C5 H6 XIJ sing 427 n n C5 H7 XIJ sing 428 n n C7 H8 XIJ sing 429 n n C8 H9 XIJ sing 430 n n C13 H13 XIJ sing 431 n n C14 H14 XIJ sing 432 n n N H XIJ sing 433 n n N H1 XIJ sing 434 n n O H10 XIJ sing 435 n n C1 H2 XIJ sing 436 n n C11 H11 XIJ sing 437 n n C12 H12 XIJ sing 438 n n C4 H5 XIJ sing 439 n n C4 H4 XIJ sing 440 n n # _atom_sites.entry_id 8R1T _atom_sites.fract_transf_matrix[1][1] 0.010309 _atom_sites.fract_transf_matrix[1][2] 0.005952 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 2 GOL GOL . D 4 XIJ A 1 402 1 XIJ 514 . E 5 HOH A 1 501 82 HOH HOH . E 5 HOH A 2 502 16 HOH HOH . E 5 HOH A 3 503 112 HOH HOH . E 5 HOH A 4 504 88 HOH HOH . E 5 HOH A 5 505 64 HOH HOH . E 5 HOH A 6 506 114 HOH HOH . E 5 HOH A 7 507 55 HOH HOH . E 5 HOH A 8 508 107 HOH HOH . E 5 HOH A 9 509 51 HOH HOH . E 5 HOH A 10 510 62 HOH HOH . E 5 HOH A 11 511 72 HOH HOH . E 5 HOH A 12 512 158 HOH HOH . E 5 HOH A 13 513 68 HOH HOH . E 5 HOH A 14 514 27 HOH HOH . E 5 HOH A 15 515 95 HOH HOH . E 5 HOH A 16 516 110 HOH HOH . E 5 HOH A 17 517 67 HOH HOH . E 5 HOH A 18 518 121 HOH HOH . E 5 HOH A 19 519 70 HOH HOH . E 5 HOH A 20 520 140 HOH HOH . E 5 HOH A 21 521 37 HOH HOH . E 5 HOH A 22 522 3 HOH HOH . E 5 HOH A 23 523 41 HOH HOH . E 5 HOH A 24 524 8 HOH HOH . E 5 HOH A 25 525 101 HOH HOH . E 5 HOH A 26 526 34 HOH HOH . E 5 HOH A 27 527 117 HOH HOH . E 5 HOH A 28 528 42 HOH HOH . E 5 HOH A 29 529 128 HOH HOH . E 5 HOH A 30 530 122 HOH HOH . E 5 HOH A 31 531 45 HOH HOH . E 5 HOH A 32 532 22 HOH HOH . E 5 HOH A 33 533 11 HOH HOH . E 5 HOH A 34 534 31 HOH HOH . E 5 HOH A 35 535 96 HOH HOH . E 5 HOH A 36 536 49 HOH HOH . E 5 HOH A 37 537 1 HOH HOH . E 5 HOH A 38 538 74 HOH HOH . E 5 HOH A 39 539 141 HOH HOH . E 5 HOH A 40 540 83 HOH HOH . E 5 HOH A 41 541 100 HOH HOH . E 5 HOH A 42 542 60 HOH HOH . E 5 HOH A 43 543 65 HOH HOH . E 5 HOH A 44 544 30 HOH HOH . E 5 HOH A 45 545 76 HOH HOH . E 5 HOH A 46 546 4 HOH HOH . E 5 HOH A 47 547 47 HOH HOH . E 5 HOH A 48 548 69 HOH HOH . E 5 HOH A 49 549 94 HOH HOH . E 5 HOH A 50 550 145 HOH HOH . E 5 HOH A 51 551 32 HOH HOH . E 5 HOH A 52 552 103 HOH HOH . E 5 HOH A 53 553 115 HOH HOH . E 5 HOH A 54 554 2 HOH HOH . E 5 HOH A 55 555 59 HOH HOH . E 5 HOH A 56 556 43 HOH HOH . E 5 HOH A 57 557 78 HOH HOH . E 5 HOH A 58 558 156 HOH HOH . E 5 HOH A 59 559 109 HOH HOH . E 5 HOH A 60 560 12 HOH HOH . E 5 HOH A 61 561 124 HOH HOH . E 5 HOH A 62 562 5 HOH HOH . E 5 HOH A 63 563 135 HOH HOH . E 5 HOH A 64 564 21 HOH HOH . E 5 HOH A 65 565 89 HOH HOH . E 5 HOH A 66 566 63 HOH HOH . E 5 HOH A 67 567 44 HOH HOH . E 5 HOH A 68 568 91 HOH HOH . E 5 HOH A 69 569 18 HOH HOH . E 5 HOH A 70 570 81 HOH HOH . E 5 HOH A 71 571 7 HOH HOH . E 5 HOH A 72 572 17 HOH HOH . E 5 HOH A 73 573 38 HOH HOH . E 5 HOH A 74 574 46 HOH HOH . E 5 HOH A 75 575 56 HOH HOH . E 5 HOH A 76 576 102 HOH HOH . E 5 HOH A 77 577 90 HOH HOH . E 5 HOH A 78 578 54 HOH HOH . E 5 HOH A 79 579 6 HOH HOH . E 5 HOH A 80 580 9 HOH HOH . E 5 HOH A 81 581 119 HOH HOH . E 5 HOH A 82 582 139 HOH HOH . E 5 HOH A 83 583 123 HOH HOH . E 5 HOH A 84 584 146 HOH HOH . E 5 HOH A 85 585 108 HOH HOH . E 5 HOH A 86 586 26 HOH HOH . E 5 HOH A 87 587 116 HOH HOH . E 5 HOH A 88 588 14 HOH HOH . E 5 HOH A 89 589 143 HOH HOH . E 5 HOH A 90 590 19 HOH HOH . E 5 HOH A 91 591 97 HOH HOH . E 5 HOH A 92 592 126 HOH HOH . E 5 HOH A 93 593 36 HOH HOH . E 5 HOH A 94 594 150 HOH HOH . E 5 HOH A 95 595 33 HOH HOH . E 5 HOH A 96 596 40 HOH HOH . E 5 HOH A 97 597 48 HOH HOH . E 5 HOH A 98 598 52 HOH HOH . E 5 HOH A 99 599 80 HOH HOH . E 5 HOH A 100 600 35 HOH HOH . E 5 HOH A 101 601 106 HOH HOH . E 5 HOH A 102 602 39 HOH HOH . E 5 HOH A 103 603 15 HOH HOH . E 5 HOH A 104 604 75 HOH HOH . E 5 HOH A 105 605 57 HOH HOH . E 5 HOH A 106 606 66 HOH HOH . E 5 HOH A 107 607 113 HOH HOH . E 5 HOH A 108 608 25 HOH HOH . E 5 HOH A 109 609 13 HOH HOH . E 5 HOH A 110 610 24 HOH HOH . E 5 HOH A 111 611 20 HOH HOH . E 5 HOH A 112 612 71 HOH HOH . E 5 HOH A 113 613 58 HOH HOH . E 5 HOH A 114 614 137 HOH HOH . E 5 HOH A 115 615 159 HOH HOH . E 5 HOH A 116 616 131 HOH HOH . E 5 HOH A 117 617 157 HOH HOH . E 5 HOH A 118 618 86 HOH HOH . E 5 HOH A 119 619 23 HOH HOH . E 5 HOH A 120 620 120 HOH HOH . E 5 HOH A 121 621 111 HOH HOH . E 5 HOH A 122 622 77 HOH HOH . E 5 HOH A 123 623 132 HOH HOH . F 5 HOH D 1 101 10 HOH HOH . F 5 HOH D 2 102 50 HOH HOH . F 5 HOH D 3 103 154 HOH HOH . F 5 HOH D 4 104 153 HOH HOH . F 5 HOH D 5 105 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 XIJ . . . D 4 113.291 203.011 -3.133 1 33.52 ? O1 XIJ 402 A 1 HETATM 2 C C2 XIJ . . . D 4 119.851 206.85 3.019 1 59.72 ? C2 XIJ 402 A 1 HETATM 3 C C5 XIJ . . . D 4 118.436 205.148 0.237 1 44.61 ? C5 XIJ 402 A 1 HETATM 4 C C6 XIJ . . . D 4 117.229 204.465 -0.369 1 38.98 ? C6 XIJ 402 A 1 HETATM 5 C C7 XIJ . . . D 4 116.584 205.015 -1.465 1 37.68 ? C7 XIJ 402 A 1 HETATM 6 C C8 XIJ . . . D 4 115.481 204.395 -2.028 1 35 ? C8 XIJ 402 A 1 HETATM 7 C C9 XIJ . . . D 4 114.99 203.203 -1.501 1 30.25 ? C9 XIJ 402 A 1 HETATM 8 C C10 XIJ . . . D 4 113.805 202.549 -2.12 1 34.21 ? C10 XIJ 402 A 1 HETATM 9 C C13 XIJ . . . D 4 119.748 207.971 0.919 1 57.36 ? C13 XIJ 402 A 1 HETATM 10 C C14 XIJ . . . D 4 120.842 208.743 1.268 1 62.91 ? C14 XIJ 402 A 1 HETATM 11 N N XIJ . . . D 4 122.547 209.357 2.867 1 69.46 ? N XIJ 402 A 1 HETATM 12 C C XIJ . . . D 4 121.461 208.58 2.509 1 67.25 ? C XIJ 402 A 1 HETATM 13 O O XIJ . . . D 4 113.369 201.477 -1.512 1 29.82 ? O XIJ 402 A 1 HETATM 14 C C1 XIJ . . . D 4 120.948 207.614 3.382 1 61.12 ? C1 XIJ 402 A 1 HETATM 15 C C11 XIJ . . . D 4 115.638 202.651 -0.402 1 43.09 ? C11 XIJ 402 A 1 HETATM 16 C C12 XIJ . . . D 4 116.743 203.274 0.159 1 40.09 ? C12 XIJ 402 A 1 HETATM 17 C C3 XIJ . . . D 4 119.236 207.014 1.786 1 54.33 ? C3 XIJ 402 A 1 HETATM 18 C C4 XIJ . . . D 4 118.062 206.158 1.379 1 44.55 ? C4 XIJ 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #