data_8R1V # _model_server_result.job_id vZQdJokj9gaWoGybQNeCdw _model_server_result.datetime_utc '2024-11-26 08:36:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 8R1V # _exptl.entry_id 8R1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.398 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-(4-methoxyphenoxy)acetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R1V _cell.length_a 100.947 _cell.length_b 104.339 _cell.length_c 144.117 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1,2 B,H,I,J,K,L,M,O 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 100.947 0 72.0585 3 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 144.117 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C20 H21 N3 O4' _chem_comp.formula_weight 367.398 _chem_comp.id XJR _chem_comp.mon_nstd_flag . _chem_comp.name N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-(4-methoxyphenoxy)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(1,5-dimethyl-3-oxidanylidene-2-phenyl-pyrazol-4-yl)-2-(4-methoxyphenoxy)ethanamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 XJR sing 389 n n O1 C2 XJR sing 390 n n C2 C3 XJR doub 391 n y C3 C4 XJR sing 392 n y C4 C5 XJR doub 393 n y C5 O2 XJR sing 394 n n O2 C6 XJR sing 395 n n C6 C7 XJR sing 396 n n C7 O3 XJR doub 397 n n C7 N1 XJR sing 398 n n N1 C8 XJR sing 399 n n C8 C9 XJR doub 400 n n C9 C10 XJR sing 401 n n C9 N2 XJR sing 402 n n N2 C11 XJR sing 403 n n N2 N3 XJR sing 404 n n N3 C12 XJR sing 405 n n C12 C13 XJR doub 406 n y C13 C14 XJR sing 407 n y C14 C15 XJR doub 408 n y C15 C16 XJR sing 409 n y C16 C17 XJR doub 410 n y N3 C18 XJR sing 411 n n C18 O4 XJR doub 412 n n C5 C19 XJR sing 413 n y C19 C20 XJR doub 414 n y C2 C20 XJR sing 415 n y C8 C18 XJR sing 416 n n C12 C17 XJR sing 417 n y C4 H5 XJR sing 418 n n C14 H16 XJR sing 419 n n C6 H6 XJR sing 420 n n C6 H7 XJR sing 421 n n C11 H14 XJR sing 422 n n C11 H12 XJR sing 423 n n C11 H13 XJR sing 424 n n C10 H10 XJR sing 425 n n C10 H11 XJR sing 426 n n C10 H9 XJR sing 427 n n C13 H15 XJR sing 428 n n N1 H8 XJR sing 429 n n C3 H4 XJR sing 430 n n C1 H3 XJR sing 431 n n C1 H1 XJR sing 432 n n C1 H2 XJR sing 433 n n C15 H17 XJR sing 434 n n C16 H18 XJR sing 435 n n C17 H19 XJR sing 436 n n C19 H20 XJR sing 437 n n C20 H21 XJR sing 438 n n # _atom_sites.entry_id 8R1V _atom_sites.fract_transf_matrix[1][1] 0.009906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XJR A 1 501 501 XJR DRG . D 3 DMS A 1 502 502 DMS DMS . E 4 FMT A 1 503 503 FMT FMT . F 4 FMT A 1 504 504 FMT FMT . G 4 FMT A 1 505 505 FMT FMT . H 2 XJR B 1 501 501 XJR DRG . I 3 DMS B 1 502 502 DMS DMS . J 4 FMT B 1 503 503 FMT FMT . K 4 FMT B 1 504 504 FMT FMT . L 4 FMT B 1 505 505 FMT FMT . M 4 FMT B 1 506 506 FMT FMT . N 5 HOH A 1 601 53 HOH HOH . N 5 HOH A 2 602 2 HOH HOH . N 5 HOH A 3 603 14 HOH HOH . N 5 HOH A 4 604 13 HOH HOH . N 5 HOH A 5 605 107 HOH HOH . N 5 HOH A 6 606 60 HOH HOH . N 5 HOH A 7 607 28 HOH HOH . N 5 HOH A 8 608 51 HOH HOH . N 5 HOH A 9 609 30 HOH HOH . N 5 HOH A 10 610 68 HOH HOH . N 5 HOH A 11 611 113 HOH HOH . N 5 HOH A 12 612 50 HOH HOH . N 5 HOH A 13 613 22 HOH HOH . N 5 HOH A 14 614 8 HOH HOH . N 5 HOH A 15 615 46 HOH HOH . N 5 HOH A 16 616 111 HOH HOH . N 5 HOH A 17 617 3 HOH HOH . N 5 HOH A 18 618 48 HOH HOH . N 5 HOH A 19 619 57 HOH HOH . N 5 HOH A 20 620 97 HOH HOH . N 5 HOH A 21 621 64 HOH HOH . N 5 HOH A 22 622 103 HOH HOH . N 5 HOH A 23 623 25 HOH HOH . N 5 HOH A 24 624 21 HOH HOH . N 5 HOH A 25 625 55 HOH HOH . N 5 HOH A 26 626 66 HOH HOH . N 5 HOH A 27 627 27 HOH HOH . N 5 HOH A 28 628 41 HOH HOH . N 5 HOH A 29 629 4 HOH HOH . N 5 HOH A 30 630 49 HOH HOH . N 5 HOH A 31 631 109 HOH HOH . N 5 HOH A 32 632 31 HOH HOH . N 5 HOH A 33 633 44 HOH HOH . N 5 HOH A 34 634 104 HOH HOH . N 5 HOH A 35 635 19 HOH HOH . N 5 HOH A 36 636 101 HOH HOH . N 5 HOH A 37 637 52 HOH HOH . N 5 HOH A 38 638 11 HOH HOH . N 5 HOH A 39 639 61 HOH HOH . N 5 HOH A 40 640 67 HOH HOH . N 5 HOH A 41 641 65 HOH HOH . N 5 HOH A 42 642 59 HOH HOH . N 5 HOH A 43 643 69 HOH HOH . N 5 HOH A 44 644 10 HOH HOH . N 5 HOH A 45 645 58 HOH HOH . N 5 HOH A 46 646 99 HOH HOH . N 5 HOH A 47 647 17 HOH HOH . N 5 HOH A 48 648 62 HOH HOH . N 5 HOH A 49 649 82 HOH HOH . O 5 HOH B 1 601 105 HOH HOH . O 5 HOH B 2 602 42 HOH HOH . O 5 HOH B 3 603 70 HOH HOH . O 5 HOH B 4 604 84 HOH HOH . O 5 HOH B 5 605 78 HOH HOH . O 5 HOH B 6 606 74 HOH HOH . O 5 HOH B 7 607 87 HOH HOH . O 5 HOH B 8 608 45 HOH HOH . O 5 HOH B 9 609 12 HOH HOH . O 5 HOH B 10 610 26 HOH HOH . O 5 HOH B 11 611 9 HOH HOH . O 5 HOH B 12 612 20 HOH HOH . O 5 HOH B 13 613 80 HOH HOH . O 5 HOH B 14 614 16 HOH HOH . O 5 HOH B 15 615 5 HOH HOH . O 5 HOH B 16 616 37 HOH HOH . O 5 HOH B 17 617 39 HOH HOH . O 5 HOH B 18 618 43 HOH HOH . O 5 HOH B 19 619 15 HOH HOH . O 5 HOH B 20 620 18 HOH HOH . O 5 HOH B 21 621 92 HOH HOH . O 5 HOH B 22 622 112 HOH HOH . O 5 HOH B 23 623 93 HOH HOH . O 5 HOH B 24 624 34 HOH HOH . O 5 HOH B 25 625 106 HOH HOH . O 5 HOH B 26 626 7 HOH HOH . O 5 HOH B 27 627 47 HOH HOH . O 5 HOH B 28 628 91 HOH HOH . O 5 HOH B 29 629 6 HOH HOH . O 5 HOH B 30 630 102 HOH HOH . O 5 HOH B 31 631 86 HOH HOH . O 5 HOH B 32 632 35 HOH HOH . O 5 HOH B 33 633 23 HOH HOH . O 5 HOH B 34 634 73 HOH HOH . O 5 HOH B 35 635 32 HOH HOH . O 5 HOH B 36 636 29 HOH HOH . O 5 HOH B 37 637 24 HOH HOH . O 5 HOH B 38 638 33 HOH HOH . O 5 HOH B 39 639 110 HOH HOH . O 5 HOH B 40 640 1 HOH HOH . O 5 HOH B 41 641 72 HOH HOH . O 5 HOH B 42 642 108 HOH HOH . O 5 HOH B 43 643 96 HOH HOH . O 5 HOH B 44 644 36 HOH HOH . O 5 HOH B 45 645 77 HOH HOH . O 5 HOH B 46 646 85 HOH HOH . O 5 HOH B 47 647 56 HOH HOH . O 5 HOH B 48 648 98 HOH HOH . O 5 HOH B 49 649 40 HOH HOH . O 5 HOH B 50 650 94 HOH HOH . O 5 HOH B 51 651 38 HOH HOH . O 5 HOH B 52 652 81 HOH HOH . O 5 HOH B 53 653 79 HOH HOH . O 5 HOH B 54 654 83 HOH HOH . O 5 HOH B 55 655 54 HOH HOH . O 5 HOH B 56 656 95 HOH HOH . O 5 HOH B 57 657 71 HOH HOH . O 5 HOH B 58 658 75 HOH HOH . O 5 HOH B 59 659 76 HOH HOH . O 5 HOH B 60 660 89 HOH HOH . O 5 HOH B 61 661 100 HOH HOH . O 5 HOH B 62 662 90 HOH HOH . O 5 HOH B 63 663 88 HOH HOH . O 5 HOH B 64 664 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 XJR . . . H 2 6.786 11.075 54.91 1 78.39 0 C4 XJR 501 B 1 HETATM 2 C C14 XJR . . . H 2 12.265 7.194 65.211 1 51.89 0 C14 XJR 501 B 1 HETATM 3 C C5 XJR . . . H 2 7.144 9.839 55.47 1 74.83 0 C5 XJR 501 B 1 HETATM 4 C C6 XJR . . . H 2 8.593 8.807 57.088 1 61.12 0 C6 XJR 501 B 1 HETATM 5 C C11 XJR . . . H 2 14.14 9.191 60.96 1 95.65 0 C11 XJR 501 B 1 HETATM 6 C C7 XJR . . . H 2 9.381 9.178 58.312 1 53.03 0 C7 XJR 501 B 1 HETATM 7 C C8 XJR . . . H 2 11.027 8.122 59.599 1 61.57 0 C8 XJR 501 B 1 HETATM 8 C C9 XJR . . . H 2 12.186 8.793 59.517 1 72.44 0 C9 XJR 501 B 1 HETATM 9 C C10 XJR . . . H 2 12.695 9.635 58.388 1 74.44 0 C10 XJR 501 B 1 HETATM 10 C C12 XJR . . . H 2 12.338 7.201 62.808 1 47.32 0 C12 XJR 501 B 1 HETATM 11 C C13 XJR . . . H 2 11.97 7.831 63.996 1 45.86 0 C13 XJR 501 B 1 HETATM 12 N N1 XJR . . . H 2 10.04 8.066 58.628 1 58.81 0 N1 XJR 501 B 1 HETATM 13 N N2 XJR . . . H 2 12.862 8.561 60.674 1 84.75 0 N2 XJR 501 B 1 HETATM 14 C C3 XJR . . . H 2 5.691 11.172 54.053 1 70.37 0 C3 XJR 501 B 1 HETATM 15 N N3 XJR . . . H 2 12.049 7.762 61.521 1 59.69 0 N3 XJR 501 B 1 HETATM 16 C C1 XJR . . . H 2 2.872 9.282 52.655 1 93.68 0 C1 XJR 501 B 1 HETATM 17 O O1 XJR . . . H 2 3.896 10.261 52.873 1 83.84 0 O1 XJR 501 B 1 HETATM 18 C C2 XJR . . . H 2 4.946 10.034 53.736 1 69.61 0 C2 XJR 501 B 1 HETATM 19 O O2 XJR . . . H 2 8.179 9.952 56.362 1 71.68 0 O2 XJR 501 B 1 HETATM 20 O O3 XJR . . . H 2 9.427 10.205 59.008 1 38.36 0 O3 XJR 501 B 1 HETATM 21 C C15 XJR . . . H 2 12.931 5.961 65.255 1 43.91 0 C15 XJR 501 B 1 HETATM 22 C C16 XJR . . . H 2 13.237 5.338 64.065 1 44.93 0 C16 XJR 501 B 1 HETATM 23 C C17 XJR . . . H 2 12.927 5.945 62.845 1 42.93 0 C17 XJR 501 B 1 HETATM 24 C C18 XJR . . . H 2 10.915 7.441 60.841 1 53.53 0 C18 XJR 501 B 1 HETATM 25 O O4 XJR . . . H 2 10.057 6.688 61.273 1 50.71 0 O4 XJR 501 B 1 HETATM 26 C C19 XJR . . . H 2 6.414 8.687 55.133 1 62.54 0 C19 XJR 501 B 1 HETATM 27 C C20 XJR . . . H 2 5.297 8.804 54.318 1 73.06 0 C20 XJR 501 B 1 HETATM 28 H H5 XJR . . . H 2 7.26 11.856 55.15 1 75.4 0 H5 XJR 501 B 1 HETATM 29 H H16 XJR . . . H 2 12.026 7.603 66.016 1 48.26 0 H16 XJR 501 B 1 HETATM 30 H H6 XJR . . . H 2 9.128 8.254 56.482 1 61.52 0 H6 XJR 501 B 1 HETATM 31 H H7 XJR . . . H 2 7.827 8.28 57.378 1 61.27 0 H7 XJR 501 B 1 HETATM 32 H H14 XJR . . . H 2 14.799 8.908 60.315 1 91.34 0 H14 XJR 501 B 1 HETATM 33 H H12 XJR . . . H 2 14.408 8.973 61.852 1 90.25 0 H12 XJR 501 B 1 HETATM 34 H H13 XJR . . . H 2 14.014 10.141 60.915 1 90.76 0 H13 XJR 501 B 1 HETATM 35 H H10 XJR . . . H 2 12.655 10.571 58.637 1 73.82 0 H10 XJR 501 B 1 HETATM 36 H H11 XJR . . . H 2 12.153 9.489 57.599 1 73.78 0 H11 XJR 501 B 1 HETATM 37 H H9 XJR . . . H 2 13.612 9.395 58.186 1 74 0 H9 XJR 501 B 1 HETATM 38 H H15 XJR . . . H 2 11.54 8.664 63.982 1 47.48 0 H15 XJR 501 B 1 HETATM 39 H H8 XJR . . . H 2 9.915 7.283 58.288 1 57.2 0 H8 XJR 501 B 1 HETATM 40 H H4 XJR . . . H 2 5.443 12.004 53.715 1 71.71 0 H4 XJR 501 B 1 HETATM 41 H H3 XJR . . . H 2 2.104 9.706 52.24 1 90.42 0 H3 XJR 501 B 1 HETATM 42 H H1 XJR . . . H 2 2.606 8.891 53.501 1 89.36 0 H1 XJR 501 B 1 HETATM 43 H H2 XJR . . . H 2 3.211 8.585 52.07 1 90.42 0 H2 XJR 501 B 1 HETATM 44 H H17 XJR . . . H 2 13.102 5.536 66.08 1 45.83 0 H17 XJR 501 B 1 HETATM 45 H H18 XJR . . . H 2 13.673 4.502 64.071 1 44.4 0 H18 XJR 501 B 1 HETATM 46 H H19 XJR . . . H 2 13.186 5.537 62.049 1 44.63 0 H19 XJR 501 B 1 HETATM 47 H H20 XJR . . . H 2 6.61 7.852 55.514 1 67.53 0 H20 XJR 501 B 1 HETATM 48 H H21 XJR . . . H 2 4.823 8.024 54.091 1 69.78 0 H21 XJR 501 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 48 #