data_8R1V # _model_server_result.job_id sIP75187QsYyXlAkGZfSBw _model_server_result.datetime_utc '2024-11-29 19:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 8R1V # _exptl.entry_id 8R1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R1V _cell.length_a 100.947 _cell.length_b 104.339 _cell.length_c 144.117 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1,2 B,H,I,J,K,L,M,O 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 100.947 0 72.0585 3 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 144.117 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8R1V _atom_sites.fract_transf_matrix[1][1] 0.009906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XJR A 1 501 501 XJR DRG . D 3 DMS A 1 502 502 DMS DMS . E 4 FMT A 1 503 503 FMT FMT . F 4 FMT A 1 504 504 FMT FMT . G 4 FMT A 1 505 505 FMT FMT . H 2 XJR B 1 501 501 XJR DRG . I 3 DMS B 1 502 502 DMS DMS . J 4 FMT B 1 503 503 FMT FMT . K 4 FMT B 1 504 504 FMT FMT . L 4 FMT B 1 505 505 FMT FMT . M 4 FMT B 1 506 506 FMT FMT . N 5 HOH A 1 601 53 HOH HOH . N 5 HOH A 2 602 2 HOH HOH . N 5 HOH A 3 603 14 HOH HOH . N 5 HOH A 4 604 13 HOH HOH . N 5 HOH A 5 605 107 HOH HOH . N 5 HOH A 6 606 60 HOH HOH . N 5 HOH A 7 607 28 HOH HOH . N 5 HOH A 8 608 51 HOH HOH . N 5 HOH A 9 609 30 HOH HOH . N 5 HOH A 10 610 68 HOH HOH . N 5 HOH A 11 611 113 HOH HOH . N 5 HOH A 12 612 50 HOH HOH . N 5 HOH A 13 613 22 HOH HOH . N 5 HOH A 14 614 8 HOH HOH . N 5 HOH A 15 615 46 HOH HOH . N 5 HOH A 16 616 111 HOH HOH . N 5 HOH A 17 617 3 HOH HOH . N 5 HOH A 18 618 48 HOH HOH . N 5 HOH A 19 619 57 HOH HOH . N 5 HOH A 20 620 97 HOH HOH . N 5 HOH A 21 621 64 HOH HOH . N 5 HOH A 22 622 103 HOH HOH . N 5 HOH A 23 623 25 HOH HOH . N 5 HOH A 24 624 21 HOH HOH . N 5 HOH A 25 625 55 HOH HOH . N 5 HOH A 26 626 66 HOH HOH . N 5 HOH A 27 627 27 HOH HOH . N 5 HOH A 28 628 41 HOH HOH . N 5 HOH A 29 629 4 HOH HOH . N 5 HOH A 30 630 49 HOH HOH . N 5 HOH A 31 631 109 HOH HOH . N 5 HOH A 32 632 31 HOH HOH . N 5 HOH A 33 633 44 HOH HOH . N 5 HOH A 34 634 104 HOH HOH . N 5 HOH A 35 635 19 HOH HOH . N 5 HOH A 36 636 101 HOH HOH . N 5 HOH A 37 637 52 HOH HOH . N 5 HOH A 38 638 11 HOH HOH . N 5 HOH A 39 639 61 HOH HOH . N 5 HOH A 40 640 67 HOH HOH . N 5 HOH A 41 641 65 HOH HOH . N 5 HOH A 42 642 59 HOH HOH . N 5 HOH A 43 643 69 HOH HOH . N 5 HOH A 44 644 10 HOH HOH . N 5 HOH A 45 645 58 HOH HOH . N 5 HOH A 46 646 99 HOH HOH . N 5 HOH A 47 647 17 HOH HOH . N 5 HOH A 48 648 62 HOH HOH . N 5 HOH A 49 649 82 HOH HOH . O 5 HOH B 1 601 105 HOH HOH . O 5 HOH B 2 602 42 HOH HOH . O 5 HOH B 3 603 70 HOH HOH . O 5 HOH B 4 604 84 HOH HOH . O 5 HOH B 5 605 78 HOH HOH . O 5 HOH B 6 606 74 HOH HOH . O 5 HOH B 7 607 87 HOH HOH . O 5 HOH B 8 608 45 HOH HOH . O 5 HOH B 9 609 12 HOH HOH . O 5 HOH B 10 610 26 HOH HOH . O 5 HOH B 11 611 9 HOH HOH . O 5 HOH B 12 612 20 HOH HOH . O 5 HOH B 13 613 80 HOH HOH . O 5 HOH B 14 614 16 HOH HOH . O 5 HOH B 15 615 5 HOH HOH . O 5 HOH B 16 616 37 HOH HOH . O 5 HOH B 17 617 39 HOH HOH . O 5 HOH B 18 618 43 HOH HOH . O 5 HOH B 19 619 15 HOH HOH . O 5 HOH B 20 620 18 HOH HOH . O 5 HOH B 21 621 92 HOH HOH . O 5 HOH B 22 622 112 HOH HOH . O 5 HOH B 23 623 93 HOH HOH . O 5 HOH B 24 624 34 HOH HOH . O 5 HOH B 25 625 106 HOH HOH . O 5 HOH B 26 626 7 HOH HOH . O 5 HOH B 27 627 47 HOH HOH . O 5 HOH B 28 628 91 HOH HOH . O 5 HOH B 29 629 6 HOH HOH . O 5 HOH B 30 630 102 HOH HOH . O 5 HOH B 31 631 86 HOH HOH . O 5 HOH B 32 632 35 HOH HOH . O 5 HOH B 33 633 23 HOH HOH . O 5 HOH B 34 634 73 HOH HOH . O 5 HOH B 35 635 32 HOH HOH . O 5 HOH B 36 636 29 HOH HOH . O 5 HOH B 37 637 24 HOH HOH . O 5 HOH B 38 638 33 HOH HOH . O 5 HOH B 39 639 110 HOH HOH . O 5 HOH B 40 640 1 HOH HOH . O 5 HOH B 41 641 72 HOH HOH . O 5 HOH B 42 642 108 HOH HOH . O 5 HOH B 43 643 96 HOH HOH . O 5 HOH B 44 644 36 HOH HOH . O 5 HOH B 45 645 77 HOH HOH . O 5 HOH B 46 646 85 HOH HOH . O 5 HOH B 47 647 56 HOH HOH . O 5 HOH B 48 648 98 HOH HOH . O 5 HOH B 49 649 40 HOH HOH . O 5 HOH B 50 650 94 HOH HOH . O 5 HOH B 51 651 38 HOH HOH . O 5 HOH B 52 652 81 HOH HOH . O 5 HOH B 53 653 79 HOH HOH . O 5 HOH B 54 654 83 HOH HOH . O 5 HOH B 55 655 54 HOH HOH . O 5 HOH B 56 656 95 HOH HOH . O 5 HOH B 57 657 71 HOH HOH . O 5 HOH B 58 658 75 HOH HOH . O 5 HOH B 59 659 76 HOH HOH . O 5 HOH B 60 660 89 HOH HOH . O 5 HOH B 61 661 100 HOH HOH . O 5 HOH B 62 662 90 HOH HOH . O 5 HOH B 63 663 88 HOH HOH . O 5 HOH B 64 664 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 3 -11.523 8.838 70.765 1 57.47 0 S DMS 502 B 1 HETATM 2 O O DMS . . . I 3 -11.342 9.165 69.28 1 64.75 0 O DMS 502 B 1 HETATM 3 C C1 DMS . . . I 3 -11.411 7.062 70.787 1 41.57 0 C1 DMS 502 B 1 HETATM 4 C C2 DMS . . . I 3 -13.22 9.207 71.138 1 58.19 0 C2 DMS 502 B 1 HETATM 5 H H11 DMS . . . I 3 -11.488 6.747 71.692 1 44.87 0 H11 DMS 502 B 1 HETATM 6 H H12 DMS . . . I 3 -10.55 6.803 70.438 1 44.76 0 H12 DMS 502 B 1 HETATM 7 H H13 DMS . . . I 3 -12.115 6.682 70.244 1 45.1 0 H13 DMS 502 B 1 HETATM 8 H H21 DMS . . . I 3 -13.795 8.724 70.529 1 58.13 0 H21 DMS 502 B 1 HETATM 9 H H22 DMS . . . I 3 -13.371 10.157 71.042 1 58.12 0 H22 DMS 502 B 1 HETATM 10 H H23 DMS . . . I 3 -13.414 8.938 72.047 1 57.97 0 H23 DMS 502 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #