data_8R2F # _model_server_result.job_id bnSD7ATt-jERtcRZwr46CQ _model_server_result.datetime_utc '2025-01-10 10:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8R2F # _exptl.entry_id 8R2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.467 _cell.angle_gamma 90 _cell.entry_id 8R2F _cell.length_a 42.555 _cell.length_b 41.636 _cell.length_c 72.519 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 AAA HIS 94 1_555 D ZN ZN . AAA ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 A NE2 HIS 96 AAA HIS 96 1_555 D ZN ZN . AAA ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 A ND1 HIS 119 AAA HIS 119 1_555 D ZN ZN . AAA ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 D ZN ZN . AAA ZN 303 1_555 E N26 XNF . AAA XNF 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8R2F _atom_sites.fract_transf_matrix[1][1] 0.023499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006063 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL AAA 1 301 301 GOL GOL . C 3 EDO AAA 1 302 302 EDO EDO . D 4 ZN AAA 1 303 1 ZN ZN . E 5 XNF AAA 1 304 303 XNF MS5 . F 6 HOH AAA 1 401 253 HOH HOH . F 6 HOH AAA 2 402 234 HOH HOH . F 6 HOH AAA 3 403 262 HOH HOH . F 6 HOH AAA 4 404 152 HOH HOH . F 6 HOH AAA 5 405 94 HOH HOH . F 6 HOH AAA 6 406 229 HOH HOH . F 6 HOH AAA 7 407 82 HOH HOH . F 6 HOH AAA 8 408 278 HOH HOH . F 6 HOH AAA 9 409 155 HOH HOH . F 6 HOH AAA 10 410 261 HOH HOH . F 6 HOH AAA 11 411 165 HOH HOH . F 6 HOH AAA 12 412 226 HOH HOH . F 6 HOH AAA 13 413 92 HOH HOH . F 6 HOH AAA 14 414 175 HOH HOH . F 6 HOH AAA 15 415 160 HOH HOH . F 6 HOH AAA 16 416 6 HOH HOH . F 6 HOH AAA 17 417 195 HOH HOH . F 6 HOH AAA 18 418 29 HOH HOH . F 6 HOH AAA 19 419 41 HOH HOH . F 6 HOH AAA 20 420 222 HOH HOH . F 6 HOH AAA 21 421 8 HOH HOH . F 6 HOH AAA 22 422 20 HOH HOH . F 6 HOH AAA 23 423 70 HOH HOH . F 6 HOH AAA 24 424 120 HOH HOH . F 6 HOH AAA 25 425 112 HOH HOH . F 6 HOH AAA 26 426 271 HOH HOH . F 6 HOH AAA 27 427 220 HOH HOH . F 6 HOH AAA 28 428 134 HOH HOH . F 6 HOH AAA 29 429 36 HOH HOH . F 6 HOH AAA 30 430 138 HOH HOH . F 6 HOH AAA 31 431 37 HOH HOH . F 6 HOH AAA 32 432 130 HOH HOH . F 6 HOH AAA 33 433 109 HOH HOH . F 6 HOH AAA 34 434 9 HOH HOH . F 6 HOH AAA 35 435 64 HOH HOH . F 6 HOH AAA 36 436 50 HOH HOH . F 6 HOH AAA 37 437 258 HOH HOH . F 6 HOH AAA 38 438 210 HOH HOH . F 6 HOH AAA 39 439 5 HOH HOH . F 6 HOH AAA 40 440 57 HOH HOH . F 6 HOH AAA 41 441 265 HOH HOH . F 6 HOH AAA 42 442 241 HOH HOH . F 6 HOH AAA 43 443 119 HOH HOH . F 6 HOH AAA 44 444 206 HOH HOH . F 6 HOH AAA 45 445 54 HOH HOH . F 6 HOH AAA 46 446 10 HOH HOH . F 6 HOH AAA 47 447 12 HOH HOH . F 6 HOH AAA 48 448 87 HOH HOH . F 6 HOH AAA 49 449 154 HOH HOH . F 6 HOH AAA 50 450 159 HOH HOH . F 6 HOH AAA 51 451 85 HOH HOH . F 6 HOH AAA 52 452 200 HOH HOH . F 6 HOH AAA 53 453 44 HOH HOH . F 6 HOH AAA 54 454 14 HOH HOH . F 6 HOH AAA 55 455 34 HOH HOH . F 6 HOH AAA 56 456 172 HOH HOH . F 6 HOH AAA 57 457 68 HOH HOH . F 6 HOH AAA 58 458 218 HOH HOH . F 6 HOH AAA 59 459 56 HOH HOH . F 6 HOH AAA 60 460 132 HOH HOH . F 6 HOH AAA 61 461 2 HOH HOH . F 6 HOH AAA 62 462 33 HOH HOH . F 6 HOH AAA 63 463 95 HOH HOH . F 6 HOH AAA 64 464 110 HOH HOH . F 6 HOH AAA 65 465 124 HOH HOH . F 6 HOH AAA 66 466 25 HOH HOH . F 6 HOH AAA 67 467 1 HOH HOH . F 6 HOH AAA 68 468 81 HOH HOH . F 6 HOH AAA 69 469 197 HOH HOH . F 6 HOH AAA 70 470 212 HOH HOH . F 6 HOH AAA 71 471 19 HOH HOH . F 6 HOH AAA 72 472 32 HOH HOH . F 6 HOH AAA 73 473 4 HOH HOH . F 6 HOH AAA 74 474 40 HOH HOH . F 6 HOH AAA 75 475 26 HOH HOH . F 6 HOH AAA 76 476 69 HOH HOH . F 6 HOH AAA 77 477 128 HOH HOH . F 6 HOH AAA 78 478 100 HOH HOH . F 6 HOH AAA 79 479 97 HOH HOH . F 6 HOH AAA 80 480 225 HOH HOH . F 6 HOH AAA 81 481 43 HOH HOH . F 6 HOH AAA 82 482 176 HOH HOH . F 6 HOH AAA 83 483 140 HOH HOH . F 6 HOH AAA 84 484 101 HOH HOH . F 6 HOH AAA 85 485 269 HOH HOH . F 6 HOH AAA 86 486 147 HOH HOH . F 6 HOH AAA 87 487 39 HOH HOH . F 6 HOH AAA 88 488 236 HOH HOH . F 6 HOH AAA 89 489 61 HOH HOH . F 6 HOH AAA 90 490 47 HOH HOH . F 6 HOH AAA 91 491 203 HOH HOH . F 6 HOH AAA 92 492 202 HOH HOH . F 6 HOH AAA 93 493 35 HOH HOH . F 6 HOH AAA 94 494 107 HOH HOH . F 6 HOH AAA 95 495 113 HOH HOH . F 6 HOH AAA 96 496 213 HOH HOH . F 6 HOH AAA 97 497 123 HOH HOH . F 6 HOH AAA 98 498 129 HOH HOH . F 6 HOH AAA 99 499 223 HOH HOH . F 6 HOH AAA 100 500 11 HOH HOH . F 6 HOH AAA 101 501 3 HOH HOH . F 6 HOH AAA 102 502 139 HOH HOH . F 6 HOH AAA 103 503 114 HOH HOH . F 6 HOH AAA 104 504 221 HOH HOH . F 6 HOH AAA 105 505 204 HOH HOH . F 6 HOH AAA 106 506 89 HOH HOH . F 6 HOH AAA 107 507 245 HOH HOH . F 6 HOH AAA 108 508 215 HOH HOH . F 6 HOH AAA 109 509 145 HOH HOH . F 6 HOH AAA 110 510 24 HOH HOH . F 6 HOH AAA 111 511 111 HOH HOH . F 6 HOH AAA 112 512 199 HOH HOH . F 6 HOH AAA 113 513 46 HOH HOH . F 6 HOH AAA 114 514 233 HOH HOH . F 6 HOH AAA 115 515 79 HOH HOH . F 6 HOH AAA 116 516 104 HOH HOH . F 6 HOH AAA 117 517 198 HOH HOH . F 6 HOH AAA 118 518 31 HOH HOH . F 6 HOH AAA 119 519 125 HOH HOH . F 6 HOH AAA 120 520 254 HOH HOH . F 6 HOH AAA 121 521 86 HOH HOH . F 6 HOH AAA 122 522 51 HOH HOH . F 6 HOH AAA 123 523 67 HOH HOH . F 6 HOH AAA 124 524 16 HOH HOH . F 6 HOH AAA 125 525 13 HOH HOH . F 6 HOH AAA 126 526 93 HOH HOH . F 6 HOH AAA 127 527 164 HOH HOH . F 6 HOH AAA 128 528 167 HOH HOH . F 6 HOH AAA 129 529 168 HOH HOH . F 6 HOH AAA 130 530 136 HOH HOH . F 6 HOH AAA 131 531 52 HOH HOH . F 6 HOH AAA 132 532 131 HOH HOH . F 6 HOH AAA 133 533 170 HOH HOH . F 6 HOH AAA 134 534 49 HOH HOH . F 6 HOH AAA 135 535 121 HOH HOH . F 6 HOH AAA 136 536 122 HOH HOH . F 6 HOH AAA 137 537 143 HOH HOH . F 6 HOH AAA 138 538 84 HOH HOH . F 6 HOH AAA 139 539 72 HOH HOH . F 6 HOH AAA 140 540 78 HOH HOH . F 6 HOH AAA 141 541 232 HOH HOH . F 6 HOH AAA 142 542 66 HOH HOH . F 6 HOH AAA 143 543 272 HOH HOH . F 6 HOH AAA 144 544 230 HOH HOH . F 6 HOH AAA 145 545 76 HOH HOH . F 6 HOH AAA 146 546 174 HOH HOH . F 6 HOH AAA 147 547 279 HOH HOH . F 6 HOH AAA 148 548 18 HOH HOH . F 6 HOH AAA 149 549 169 HOH HOH . F 6 HOH AAA 150 550 117 HOH HOH . F 6 HOH AAA 151 551 88 HOH HOH . F 6 HOH AAA 152 552 77 HOH HOH . F 6 HOH AAA 153 553 208 HOH HOH . F 6 HOH AAA 154 554 205 HOH HOH . F 6 HOH AAA 155 555 22 HOH HOH . F 6 HOH AAA 156 556 65 HOH HOH . F 6 HOH AAA 157 557 15 HOH HOH . F 6 HOH AAA 158 558 151 HOH HOH . F 6 HOH AAA 159 559 211 HOH HOH . F 6 HOH AAA 160 560 48 HOH HOH . F 6 HOH AAA 161 561 23 HOH HOH . F 6 HOH AAA 162 562 102 HOH HOH . F 6 HOH AAA 163 563 157 HOH HOH . F 6 HOH AAA 164 564 201 HOH HOH . F 6 HOH AAA 165 565 55 HOH HOH . F 6 HOH AAA 166 566 149 HOH HOH . F 6 HOH AAA 167 567 214 HOH HOH . F 6 HOH AAA 168 568 163 HOH HOH . F 6 HOH AAA 169 569 116 HOH HOH . F 6 HOH AAA 170 570 58 HOH HOH . F 6 HOH AAA 171 571 177 HOH HOH . F 6 HOH AAA 172 572 105 HOH HOH . F 6 HOH AAA 173 573 7 HOH HOH . F 6 HOH AAA 174 574 28 HOH HOH . F 6 HOH AAA 175 575 209 HOH HOH . F 6 HOH AAA 176 576 21 HOH HOH . F 6 HOH AAA 177 577 42 HOH HOH . F 6 HOH AAA 178 578 99 HOH HOH . F 6 HOH AAA 179 579 90 HOH HOH . F 6 HOH AAA 180 580 98 HOH HOH . F 6 HOH AAA 181 581 150 HOH HOH . F 6 HOH AAA 182 582 239 HOH HOH . F 6 HOH AAA 183 583 148 HOH HOH . F 6 HOH AAA 184 584 171 HOH HOH . F 6 HOH AAA 185 585 196 HOH HOH . F 6 HOH AAA 186 586 240 HOH HOH . F 6 HOH AAA 187 587 53 HOH HOH . F 6 HOH AAA 188 588 273 HOH HOH . F 6 HOH AAA 189 589 158 HOH HOH . F 6 HOH AAA 190 590 227 HOH HOH . F 6 HOH AAA 191 591 71 HOH HOH . F 6 HOH AAA 192 592 17 HOH HOH . F 6 HOH AAA 193 593 63 HOH HOH . F 6 HOH AAA 194 594 38 HOH HOH . F 6 HOH AAA 195 595 91 HOH HOH . F 6 HOH AAA 196 596 191 HOH HOH . F 6 HOH AAA 197 597 60 HOH HOH . F 6 HOH AAA 198 598 135 HOH HOH . F 6 HOH AAA 199 599 108 HOH HOH . F 6 HOH AAA 200 600 141 HOH HOH . F 6 HOH AAA 201 601 106 HOH HOH . F 6 HOH AAA 202 602 187 HOH HOH . F 6 HOH AAA 203 603 237 HOH HOH . F 6 HOH AAA 204 604 235 HOH HOH . F 6 HOH AAA 205 605 27 HOH HOH . F 6 HOH AAA 206 606 178 HOH HOH . F 6 HOH AAA 207 607 248 HOH HOH . F 6 HOH AAA 208 608 224 HOH HOH . F 6 HOH AAA 209 609 194 HOH HOH . F 6 HOH AAA 210 610 103 HOH HOH . F 6 HOH AAA 211 611 144 HOH HOH . F 6 HOH AAA 212 612 73 HOH HOH . F 6 HOH AAA 213 613 281 HOH HOH . F 6 HOH AAA 214 614 173 HOH HOH . F 6 HOH AAA 215 615 80 HOH HOH . F 6 HOH AAA 216 616 244 HOH HOH . F 6 HOH AAA 217 617 243 HOH HOH . F 6 HOH AAA 218 618 274 HOH HOH . F 6 HOH AAA 219 619 275 HOH HOH . F 6 HOH AAA 220 620 118 HOH HOH . F 6 HOH AAA 221 621 30 HOH HOH . F 6 HOH AAA 222 622 45 HOH HOH . F 6 HOH AAA 223 623 238 HOH HOH . F 6 HOH AAA 224 624 74 HOH HOH . F 6 HOH AAA 225 625 186 HOH HOH . F 6 HOH AAA 226 626 179 HOH HOH . F 6 HOH AAA 227 627 216 HOH HOH . F 6 HOH AAA 228 628 270 HOH HOH . F 6 HOH AAA 229 629 219 HOH HOH . F 6 HOH AAA 230 630 251 HOH HOH . F 6 HOH AAA 231 631 217 HOH HOH . F 6 HOH AAA 232 632 256 HOH HOH . F 6 HOH AAA 233 633 83 HOH HOH . F 6 HOH AAA 234 634 153 HOH HOH . F 6 HOH AAA 235 635 207 HOH HOH . F 6 HOH AAA 236 636 264 HOH HOH . F 6 HOH AAA 237 637 268 HOH HOH . F 6 HOH AAA 238 638 62 HOH HOH . F 6 HOH AAA 239 639 184 HOH HOH . F 6 HOH AAA 240 640 280 HOH HOH . F 6 HOH AAA 241 641 59 HOH HOH . F 6 HOH AAA 242 642 142 HOH HOH . F 6 HOH AAA 243 643 137 HOH HOH . F 6 HOH AAA 244 644 181 HOH HOH . F 6 HOH AAA 245 645 242 HOH HOH . F 6 HOH AAA 246 646 180 HOH HOH . F 6 HOH AAA 247 647 182 HOH HOH . F 6 HOH AAA 248 648 96 HOH HOH . F 6 HOH AAA 249 649 247 HOH HOH . F 6 HOH AAA 250 650 190 HOH HOH . F 6 HOH AAA 251 651 183 HOH HOH . F 6 HOH AAA 252 652 156 HOH HOH . F 6 HOH AAA 253 653 193 HOH HOH . F 6 HOH AAA 254 654 127 HOH HOH . F 6 HOH AAA 255 655 188 HOH HOH . F 6 HOH AAA 256 656 252 HOH HOH . F 6 HOH AAA 257 657 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.329 -0.553 11.874 1 14.11 ? C1 GOL 301 AAA 1 HETATM 2 O O1 GOL . . . B 2 -3.026 -0.707 11.303 1 14.08 ? O1 GOL 301 AAA 1 HETATM 3 C C2 GOL . . . B 2 -5.078 0.587 11.216 1 13.03 ? C2 GOL 301 AAA 1 HETATM 4 O O2 GOL . . . B 2 -5.216 0.348 9.82 1 12.97 ? O2 GOL 301 AAA 1 HETATM 5 C C3 GOL . . . B 2 -4.427 1.941 11.405 1 15.21 ? C3 GOL 301 AAA 1 HETATM 6 O O3 GOL . . . B 2 -5.316 2.957 10.916 1 16.59 ? O3 GOL 301 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #