data_8R2I # _model_server_result.job_id BYHbuV0dIR8nonK2jam2qw _model_server_result.datetime_utc '2024-10-20 01:22:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OB","auth_seq_id":101}' # _entry.id 8R2I # _exptl.entry_id 8R2I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R2I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 23 _struct_asym.id OB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 L FE FE2 . A FE2 401 1_555 D NE2 HIS 212 D HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc2 L FE FE2 . A FE2 401 1_555 D NE2 HIS 266 D HIS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc3 L FE FE2 . A FE2 401 1_555 IB O3 BCT . D BCT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc4 N MG CLA . A CLA 403 1_555 RB O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 S MG CLA . B CLA 501 1_555 SB O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 BA MG CLA . B CLA 510 1_555 SB O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C OD1 ASN 7 C ASN 27 1_555 YA MG CLA . C CLA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc8 UA MG CLA . C CLA 507 1_555 TB O HOH . C HOH 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc9 GB MG CLA . D CLA 401 1_555 UB O HOH . D HOH 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 E NE2 HIS 17 E HIS 23 1_555 OB FE HEM . E HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 OB FE HEM . E HEM 101 1_555 F NE2 HIS 12 F HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 586 n n CHA C4D HEM doub 587 n n CHA HHA HEM sing 588 n n CHB C4A HEM sing 589 n n CHB C1B HEM doub 590 n n CHB HHB HEM sing 591 n n CHC C4B HEM sing 592 n n CHC C1C HEM doub 593 n n CHC HHC HEM sing 594 n n CHD C4C HEM doub 595 n n CHD C1D HEM sing 596 n n CHD HHD HEM sing 597 n n C1A C2A HEM doub 598 n y C1A NA HEM sing 599 n y C2A C3A HEM sing 600 n y C2A CAA HEM sing 601 n n C3A C4A HEM doub 602 n y C3A CMA HEM sing 603 n n C4A NA HEM sing 604 n y CMA HMA HEM sing 605 n n CMA HMAA HEM sing 606 n n CMA HMAB HEM sing 607 n n CAA CBA HEM sing 608 n n CAA HAA HEM sing 609 n n CAA HAAA HEM sing 610 n n CBA CGA HEM sing 611 n n CBA HBA HEM sing 612 n n CBA HBAA HEM sing 613 n n CGA O1A HEM doub 614 n n CGA O2A HEM sing 615 n n C1B C2B HEM sing 616 n n C1B NB HEM sing 617 n n C2B C3B HEM doub 618 n n C2B CMB HEM sing 619 n n C3B C4B HEM sing 620 n n C3B CAB HEM sing 621 n n C4B NB HEM doub 622 n n CMB HMB HEM sing 623 n n CMB HMBA HEM sing 624 n n CMB HMBB HEM sing 625 n n CAB CBB HEM doub 626 n n CAB HAB HEM sing 627 n n CBB HBB HEM sing 628 n n CBB HBBA HEM sing 629 n n C1C C2C HEM sing 630 n y C1C NC HEM sing 631 n y C2C C3C HEM doub 632 n y C2C CMC HEM sing 633 n n C3C C4C HEM sing 634 n y C3C CAC HEM sing 635 n n C4C NC HEM sing 636 n y CMC HMC HEM sing 637 n n CMC HMCA HEM sing 638 n n CMC HMCB HEM sing 639 n n CAC CBC HEM doub 640 n n CAC HAC HEM sing 641 n n CBC HBC HEM sing 642 n n CBC HBCA HEM sing 643 n n C1D C2D HEM sing 644 n n C1D ND HEM doub 645 n n C2D C3D HEM doub 646 n n C2D CMD HEM sing 647 n n C3D C4D HEM sing 648 n n C3D CAD HEM sing 649 n n C4D ND HEM sing 650 n n CMD HMD HEM sing 651 n n CMD HMDA HEM sing 652 n n CMD HMDB HEM sing 653 n n CAD CBD HEM sing 654 n n CAD HAD HEM sing 655 n n CAD HADA HEM sing 656 n n CBD CGD HEM sing 657 n n CBD HBD HEM sing 658 n n CBD HBDA HEM sing 659 n n CGD O1D HEM doub 660 n n CGD O2D HEM sing 661 n n O2A H2A HEM sing 662 n n O2D H2D HEM sing 663 n n FE NA HEM sing 664 n n FE NB HEM sing 665 n n FE NC HEM sing 666 n n FE ND HEM sing 667 n n # _atom_sites.entry_id 8R2I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 FE2 A 1 401 402 FE2 FE2 . M 13 CLA A 1 402 405 CLA CLA . N 13 CLA A 1 403 407 CLA CLA . O 14 PHO A 1 404 408 PHO PHO . P 13 CLA A 1 405 410 CLA CLA . Q 15 BCR A 1 406 411 BCR BCR . R 16 BOG A 1 407 412 BOG BOG . S 13 CLA B 1 501 602 CLA CLA . T 13 CLA B 1 502 603 CLA CLA . U 13 CLA B 1 503 604 CLA CLA . V 13 CLA B 1 504 605 CLA CLA . W 13 CLA B 1 505 606 CLA CLA . X 13 CLA B 1 506 607 CLA CLA . Y 13 CLA B 1 507 608 CLA CLA . Z 13 CLA B 1 508 609 CLA CLA . AA 13 CLA B 1 509 610 CLA CLA . BA 13 CLA B 1 510 611 CLA CLA . CA 13 CLA B 1 511 612 CLA CLA . DA 13 CLA B 1 512 613 CLA CLA . EA 13 CLA B 1 513 614 CLA CLA . FA 13 CLA B 1 514 615 CLA CLA . GA 13 CLA B 1 515 616 CLA CLA . HA 13 CLA B 1 516 617 CLA CLA . IA 15 BCR B 1 517 619 BCR BCR . JA 15 BCR B 1 518 620 BCR BCR . KA 17 LMG B 1 519 622 LMG LMG . LA 18 LMT B 1 520 623 LMT LMT . MA 18 LMT B 1 521 624 LMT LMT . NA 19 LHG B 1 522 408 LHG LHG . OA 13 CLA C 1 501 501 CLA CLA . PA 13 CLA C 1 502 502 CLA CLA . QA 13 CLA C 1 503 503 CLA CLA . RA 13 CLA C 1 504 504 CLA CLA . SA 13 CLA C 1 505 505 CLA CLA . TA 13 CLA C 1 506 506 CLA CLA . UA 13 CLA C 1 507 507 CLA CLA . VA 13 CLA C 1 508 508 CLA CLA . WA 13 CLA C 1 509 509 CLA CLA . XA 13 CLA C 1 510 510 CLA CLA . YA 13 CLA C 1 511 511 CLA CLA . ZA 13 CLA C 1 512 512 CLA CLA . AB 13 CLA C 1 513 513 CLA CLA . BB 15 BCR C 1 514 514 BCR BCR . CB 15 BCR C 1 515 515 BCR BCR . DB 15 BCR C 1 516 517 BCR BCR . EB 20 DGD C 1 517 518 DGD DGD . FB 16 BOG C 1 518 519 BOG BOG . GB 13 CLA D 1 401 406 CLA CLA . HB 14 PHO D 1 402 409 PHO PHO . IB 21 BCT D 1 403 401 BCT BCT . JB 13 CLA D 1 404 402 CLA CLA . KB 13 CLA D 1 405 403 CLA CLA . LB 15 BCR D 1 406 404 BCR BCR . MB 22 PL9 D 1 407 405 PL9 PL9 . NB 16 BOG D 1 408 409 BOG BOG . OB 23 HEM E 1 101 101 HEM HEM . PB 15 BCR H 1 101 101 BCR BCR . QB 17 LMG H 1 102 102 LMG LMG . RB 24 HOH A 1 501 6002 HOH HOH . SB 24 HOH B 1 601 6002 HOH HOH . SB 24 HOH B 2 602 6001 HOH HOH . TB 24 HOH C 1 6001 6001 HOH HOH . UB 24 HOH D 1 6001 6001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . OB 23 112.664 168.413 143.102 1 88.6 ? CHA HEM 101 E 1 HETATM 2 C CHB HEM . . . OB 23 114.246 171.593 146.395 1 88.6 ? CHB HEM 101 E 1 HETATM 3 C CHC HEM . . . OB 23 118.799 170.251 145.418 1 88.6 ? CHC HEM 101 E 1 HETATM 4 C CHD HEM . . . OB 23 117.177 166.746 142.465 1 88.6 ? CHD HEM 101 E 1 HETATM 5 C C1A HEM . . . OB 23 112.677 169.316 144.142 1 88.6 ? C1A HEM 101 E 1 HETATM 6 C C2A HEM . . . OB 23 111.537 169.765 144.919 1 88.6 ? C2A HEM 101 E 1 HETATM 7 C C3A HEM . . . OB 23 111.979 170.641 145.825 1 88.6 ? C3A HEM 101 E 1 HETATM 8 C C4A HEM . . . OB 23 113.411 170.784 145.657 1 88.6 ? C4A HEM 101 E 1 HETATM 9 C CMA HEM . . . OB 23 111.114 171.376 146.871 1 88.6 ? CMA HEM 101 E 1 HETATM 10 C CAA HEM . . . OB 23 110.068 169.315 144.742 1 88.6 ? CAA HEM 101 E 1 HETATM 11 C CBA HEM . . . OB 23 109.933 167.816 144.994 1 88.6 ? CBA HEM 101 E 1 HETATM 12 C CGA HEM . . . OB 23 108.676 167.292 144.349 1 88.6 ? CGA HEM 101 E 1 HETATM 13 O O1A HEM . . . OB 23 107.933 168.099 143.735 1 88.6 ? O1A HEM 101 E 1 HETATM 14 O O2A HEM . . . OB 23 108.421 166.064 144.446 1 88.6 ? O2A HEM 101 E 1 HETATM 15 C C1B HEM . . . OB 23 115.618 171.477 146.456 1 88.6 ? C1B HEM 101 E 1 HETATM 16 C C2B HEM . . . OB 23 116.488 172.14 147.407 1 88.6 ? C2B HEM 101 E 1 HETATM 17 C C3B HEM . . . OB 23 117.754 171.769 147.138 1 88.6 ? C3B HEM 101 E 1 HETATM 18 C C4B HEM . . . OB 23 117.712 170.86 146.008 1 88.6 ? C4B HEM 101 E 1 HETATM 19 C CMB HEM . . . OB 23 115.965 173.093 148.507 1 88.6 ? CMB HEM 101 E 1 HETATM 20 C CAB HEM . . . OB 23 119.082 172.171 147.834 1 88.6 ? CAB HEM 101 E 1 HETATM 21 C CBB HEM . . . OB 23 119.182 173.007 148.875 1 88.6 ? CBB HEM 101 E 1 HETATM 22 C C1C HEM . . . OB 23 118.764 169.228 144.492 1 88.6 ? C1C HEM 101 E 1 HETATM 23 C C2C HEM . . . OB 23 119.907 168.659 143.812 1 88.6 ? C2C HEM 101 E 1 HETATM 24 C C3C HEM . . . OB 23 119.482 167.694 142.994 1 88.6 ? C3C HEM 101 E 1 HETATM 25 C C4C HEM . . . OB 23 118.033 167.607 143.124 1 88.6 ? C4C HEM 101 E 1 HETATM 26 C CMC HEM . . . OB 23 121.375 169.096 143.999 1 88.6 ? CMC HEM 101 E 1 HETATM 27 C CAC HEM . . . OB 23 120.428 166.856 142.097 1 88.6 ? CAC HEM 101 E 1 HETATM 28 C CBC HEM . . . OB 23 119.993 165.914 141.254 1 88.6 ? CBC HEM 101 E 1 HETATM 29 C C1D HEM . . . OB 23 115.802 166.849 142.424 1 88.6 ? C1D HEM 101 E 1 HETATM 30 C C2D HEM . . . OB 23 114.883 165.906 141.815 1 88.6 ? C2D HEM 101 E 1 HETATM 31 C C3D HEM . . . OB 23 113.64 166.364 141.983 1 88.6 ? C3D HEM 101 E 1 HETATM 32 C C4D HEM . . . OB 23 113.718 167.613 142.716 1 88.6 ? C4D HEM 101 E 1 HETATM 33 C CMD HEM . . . OB 23 115.275 164.603 141.088 1 88.6 ? CMD HEM 101 E 1 HETATM 34 C CAD HEM . . . OB 23 112.345 165.675 141.496 1 88.6 ? CAD HEM 101 E 1 HETATM 35 C CBD HEM . . . OB 23 111.608 166.583 140.515 1 88.6 ? CBD HEM 101 E 1 HETATM 36 C CGD HEM . . . OB 23 110.121 166.44 140.705 1 88.6 ? CGD HEM 101 E 1 HETATM 37 O O1D HEM . . . OB 23 109.7 165.679 141.614 1 88.6 ? O1D HEM 101 E 1 HETATM 38 O O2D HEM . . . OB 23 109.355 167.092 139.949 1 88.6 ? O2D HEM 101 E 1 HETATM 39 N NA HEM . . . OB 23 113.802 169.961 144.619 1 88.6 ? NA HEM 101 E 1 HETATM 40 N NB HEM . . . OB 23 116.398 170.706 145.619 1 88.6 ? NB HEM 101 E 1 HETATM 41 N NC HEM . . . OB 23 117.638 168.562 144.047 1 88.6 ? NC HEM 101 E 1 HETATM 42 N ND HEM . . . OB 23 115.052 167.877 142.963 1 88.6 ? ND HEM 101 E 1 HETATM 43 FE FE HEM . . . OB 23 115.733 169.333 144.242 1 88.6 ? FE HEM 101 E 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #