data_8R2I # _model_server_result.job_id 8SPUHPCdgFJimfknGLVMMA _model_server_result.datetime_utc '2024-10-20 01:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":519}' # _entry.id 8R2I # _exptl.entry_id 8R2I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.158 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R2I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 KA N N ? 17 QB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 L FE FE2 . A FE2 401 1_555 D NE2 HIS 212 D HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc2 L FE FE2 . A FE2 401 1_555 D NE2 HIS 266 D HIS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc3 L FE FE2 . A FE2 401 1_555 IB O3 BCT . D BCT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc4 N MG CLA . A CLA 403 1_555 RB O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 S MG CLA . B CLA 501 1_555 SB O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 BA MG CLA . B CLA 510 1_555 SB O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C OD1 ASN 7 C ASN 27 1_555 YA MG CLA . C CLA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc8 UA MG CLA . C CLA 507 1_555 TB O HOH . C HOH 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc9 GB MG CLA . D CLA 401 1_555 UB O HOH . D HOH 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 E NE2 HIS 17 E HIS 23 1_555 OB FE HEM . E HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 OB FE HEM . E HEM 101 1_555 F NE2 HIS 12 F HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? # _chem_comp.formula 'C45 H86 O10' _chem_comp.formula_weight 787.158 _chem_comp.id LMG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LMG sing 856 n n C1 C2 LMG sing 857 n n C1 O6 LMG sing 858 n n C1 HC1 LMG sing 859 n n O1 C7 LMG sing 860 n n C2 O2 LMG sing 861 n n C2 C3 LMG sing 862 n n C2 HC2 LMG sing 863 n n O2 HO2 LMG sing 864 n n C3 O3 LMG sing 865 n n C3 C4 LMG sing 866 n n C3 HC3 LMG sing 867 n n O3 HO3 LMG sing 868 n n C4 O4 LMG sing 869 n n C4 C5 LMG sing 870 n n C4 HC4 LMG sing 871 n n O4 HO4 LMG sing 872 n n C5 C6 LMG sing 873 n n C5 O6 LMG sing 874 n n C5 HC5 LMG sing 875 n n O5 C6 LMG sing 876 n n O5 HO5 LMG sing 877 n n C6 HC61 LMG sing 878 n n C6 HC62 LMG sing 879 n n C7 C8 LMG sing 880 n n C7 HC71 LMG sing 881 n n C7 HC72 LMG sing 882 n n C8 C9 LMG sing 883 n n C8 O7 LMG sing 884 n n C8 HC8 LMG sing 885 n n C9 O8 LMG sing 886 n n C9 HC91 LMG sing 887 n n C9 HC92 LMG sing 888 n n O7 C10 LMG sing 889 n n C10 O9 LMG doub 890 n n C10 C11 LMG sing 891 n n C11 C12 LMG sing 892 n n C11 H111 LMG sing 893 n n C11 H112 LMG sing 894 n n C12 C13 LMG sing 895 n n C12 H121 LMG sing 896 n n C12 H122 LMG sing 897 n n C13 C14 LMG sing 898 n n C13 H131 LMG sing 899 n n C13 H132 LMG sing 900 n n C14 C15 LMG sing 901 n n C14 H141 LMG sing 902 n n C14 H142 LMG sing 903 n n C15 C16 LMG sing 904 n n C15 H151 LMG sing 905 n n C15 H152 LMG sing 906 n n C16 C17 LMG sing 907 n n C16 H161 LMG sing 908 n n C16 H162 LMG sing 909 n n C17 C18 LMG sing 910 n n C17 H171 LMG sing 911 n n C17 H172 LMG sing 912 n n C18 C19 LMG sing 913 n n C18 H181 LMG sing 914 n n C18 H182 LMG sing 915 n n C19 C20 LMG sing 916 n n C19 H191 LMG sing 917 n n C19 H192 LMG sing 918 n n C20 C21 LMG sing 919 n n C20 H201 LMG sing 920 n n C20 H202 LMG sing 921 n n C21 C22 LMG sing 922 n n C21 H211 LMG sing 923 n n C21 H212 LMG sing 924 n n C22 C23 LMG sing 925 n n C22 H221 LMG sing 926 n n C22 H222 LMG sing 927 n n C23 C24 LMG sing 928 n n C23 H231 LMG sing 929 n n C23 H232 LMG sing 930 n n C24 C25 LMG sing 931 n n C24 H241 LMG sing 932 n n C24 H242 LMG sing 933 n n C25 C26 LMG sing 934 n n C25 H251 LMG sing 935 n n C25 H252 LMG sing 936 n n C26 C27 LMG sing 937 n n C26 H261 LMG sing 938 n n C26 H262 LMG sing 939 n n C27 H271 LMG sing 940 n n C27 H272 LMG sing 941 n n C27 H273 LMG sing 942 n n O8 C28 LMG sing 943 n n C28 O10 LMG doub 944 n n C28 C29 LMG sing 945 n n C29 C30 LMG sing 946 n n C29 H291 LMG sing 947 n n C29 H292 LMG sing 948 n n C30 C31 LMG sing 949 n n C30 H301 LMG sing 950 n n C30 H302 LMG sing 951 n n C31 C32 LMG sing 952 n n C31 H311 LMG sing 953 n n C31 H312 LMG sing 954 n n C32 C33 LMG sing 955 n n C32 H321 LMG sing 956 n n C32 H322 LMG sing 957 n n C33 C34 LMG sing 958 n n C33 H331 LMG sing 959 n n C33 H332 LMG sing 960 n n C34 C35 LMG sing 961 n n C34 H341 LMG sing 962 n n C34 H342 LMG sing 963 n n C35 C36 LMG sing 964 n n C35 H351 LMG sing 965 n n C35 H352 LMG sing 966 n n C36 C37 LMG sing 967 n n C36 H361 LMG sing 968 n n C36 H362 LMG sing 969 n n C37 C38 LMG sing 970 n n C37 H371 LMG sing 971 n n C37 H372 LMG sing 972 n n C38 C39 LMG sing 973 n n C38 H381 LMG sing 974 n n C38 H382 LMG sing 975 n n C39 C40 LMG sing 976 n n C39 H391 LMG sing 977 n n C39 H392 LMG sing 978 n n C40 C41 LMG sing 979 n n C40 H401 LMG sing 980 n n C40 H402 LMG sing 981 n n C41 C42 LMG sing 982 n n C41 H411 LMG sing 983 n n C41 H412 LMG sing 984 n n C42 C43 LMG sing 985 n n C42 H421 LMG sing 986 n n C42 H422 LMG sing 987 n n C43 C44 LMG sing 988 n n C43 H431 LMG sing 989 n n C43 H432 LMG sing 990 n n C44 C45 LMG sing 991 n n C44 H441 LMG sing 992 n n C44 H442 LMG sing 993 n n C45 H451 LMG sing 994 n n C45 H452 LMG sing 995 n n C45 H453 LMG sing 996 n n # _atom_sites.entry_id 8R2I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 FE2 A 1 401 402 FE2 FE2 . M 13 CLA A 1 402 405 CLA CLA . N 13 CLA A 1 403 407 CLA CLA . O 14 PHO A 1 404 408 PHO PHO . P 13 CLA A 1 405 410 CLA CLA . Q 15 BCR A 1 406 411 BCR BCR . R 16 BOG A 1 407 412 BOG BOG . S 13 CLA B 1 501 602 CLA CLA . T 13 CLA B 1 502 603 CLA CLA . U 13 CLA B 1 503 604 CLA CLA . V 13 CLA B 1 504 605 CLA CLA . W 13 CLA B 1 505 606 CLA CLA . X 13 CLA B 1 506 607 CLA CLA . Y 13 CLA B 1 507 608 CLA CLA . Z 13 CLA B 1 508 609 CLA CLA . AA 13 CLA B 1 509 610 CLA CLA . BA 13 CLA B 1 510 611 CLA CLA . CA 13 CLA B 1 511 612 CLA CLA . DA 13 CLA B 1 512 613 CLA CLA . EA 13 CLA B 1 513 614 CLA CLA . FA 13 CLA B 1 514 615 CLA CLA . GA 13 CLA B 1 515 616 CLA CLA . HA 13 CLA B 1 516 617 CLA CLA . IA 15 BCR B 1 517 619 BCR BCR . JA 15 BCR B 1 518 620 BCR BCR . KA 17 LMG B 1 519 622 LMG LMG . LA 18 LMT B 1 520 623 LMT LMT . MA 18 LMT B 1 521 624 LMT LMT . NA 19 LHG B 1 522 408 LHG LHG . OA 13 CLA C 1 501 501 CLA CLA . PA 13 CLA C 1 502 502 CLA CLA . QA 13 CLA C 1 503 503 CLA CLA . RA 13 CLA C 1 504 504 CLA CLA . SA 13 CLA C 1 505 505 CLA CLA . TA 13 CLA C 1 506 506 CLA CLA . UA 13 CLA C 1 507 507 CLA CLA . VA 13 CLA C 1 508 508 CLA CLA . WA 13 CLA C 1 509 509 CLA CLA . XA 13 CLA C 1 510 510 CLA CLA . YA 13 CLA C 1 511 511 CLA CLA . ZA 13 CLA C 1 512 512 CLA CLA . AB 13 CLA C 1 513 513 CLA CLA . BB 15 BCR C 1 514 514 BCR BCR . CB 15 BCR C 1 515 515 BCR BCR . DB 15 BCR C 1 516 517 BCR BCR . EB 20 DGD C 1 517 518 DGD DGD . FB 16 BOG C 1 518 519 BOG BOG . GB 13 CLA D 1 401 406 CLA CLA . HB 14 PHO D 1 402 409 PHO PHO . IB 21 BCT D 1 403 401 BCT BCT . JB 13 CLA D 1 404 402 CLA CLA . KB 13 CLA D 1 405 403 CLA CLA . LB 15 BCR D 1 406 404 BCR BCR . MB 22 PL9 D 1 407 405 PL9 PL9 . NB 16 BOG D 1 408 409 BOG BOG . OB 23 HEM E 1 101 101 HEM HEM . PB 15 BCR H 1 101 101 BCR BCR . QB 17 LMG H 1 102 102 LMG LMG . RB 24 HOH A 1 501 6002 HOH HOH . SB 24 HOH B 1 601 6002 HOH HOH . SB 24 HOH B 2 602 6001 HOH HOH . TB 24 HOH C 1 6001 6001 HOH HOH . UB 24 HOH D 1 6001 6001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMG . . . KA 17 152.643 116.162 170.232 1 39.82 ? C1 LMG 519 B 1 HETATM 2 O O1 LMG . . . KA 17 151.304 116.428 169.822 1 39.82 ? O1 LMG 519 B 1 HETATM 3 C C2 LMG . . . KA 17 153.589 116.411 169.062 1 39.82 ? C2 LMG 519 B 1 HETATM 4 O O2 LMG . . . KA 17 153.295 115.49 168.006 1 39.82 ? O2 LMG 519 B 1 HETATM 5 C C3 LMG . . . KA 17 155.038 116.241 169.497 1 39.82 ? C3 LMG 519 B 1 HETATM 6 O O3 LMG . . . KA 17 155.909 116.644 168.435 1 39.82 ? O3 LMG 519 B 1 HETATM 7 C C4 LMG . . . KA 17 155.321 117.08 170.735 1 39.82 ? C4 LMG 519 B 1 HETATM 8 O O4 LMG . . . KA 17 155.265 118.469 170.392 1 39.82 ? O4 LMG 519 B 1 HETATM 9 C C5 LMG . . . KA 17 154.294 116.778 171.819 1 39.82 ? C5 LMG 519 B 1 HETATM 10 O O5 LMG . . . KA 17 153.524 117.333 174.035 1 39.82 ? O5 LMG 519 B 1 HETATM 11 C C6 LMG . . . KA 17 154.53 117.629 173.06 1 39.82 ? C6 LMG 519 B 1 HETATM 12 O O6 LMG . . . KA 17 152.983 117.029 171.313 1 39.82 ? O6 LMG 519 B 1 HETATM 13 C C7 LMG . . . KA 17 151.11 117.816 169.573 1 39.82 ? C7 LMG 519 B 1 HETATM 14 C C8 LMG . . . KA 17 149.837 118.025 168.764 1 39.82 ? C8 LMG 519 B 1 HETATM 15 C C9 LMG . . . KA 17 149.802 117.038 167.603 1 39.82 ? C9 LMG 519 B 1 HETATM 16 O O7 LMG . . . KA 17 148.693 117.823 169.588 1 39.82 ? O7 LMG 519 B 1 HETATM 17 C C10 LMG . . . KA 17 147.606 118.355 169.014 1 39.82 ? C10 LMG 519 B 1 HETATM 18 O O9 LMG . . . KA 17 147.658 119.509 168.624 1 39.82 ? O9 LMG 519 B 1 HETATM 19 C C11 LMG . . . KA 17 146.346 117.543 168.845 1 39.82 ? C11 LMG 519 B 1 HETATM 20 C C12 LMG . . . KA 17 145.139 118.425 169.14 1 39.82 ? C12 LMG 519 B 1 HETATM 21 C C13 LMG . . . KA 17 144.604 119.071 167.868 1 39.82 ? C13 LMG 519 B 1 HETATM 22 C C14 LMG . . . KA 17 143.709 120.259 168.19 1 39.82 ? C14 LMG 519 B 1 HETATM 23 C C15 LMG . . . KA 17 144.522 121.4 168.789 1 39.82 ? C15 LMG 519 B 1 HETATM 24 C C16 LMG . . . KA 17 143.659 122.637 169.002 1 39.82 ? C16 LMG 519 B 1 HETATM 25 C C17 LMG . . . KA 17 143.056 123.12 167.689 1 39.82 ? C17 LMG 519 B 1 HETATM 26 C C18 LMG . . . KA 17 142.201 124.335 167.955 1 39.82 ? C18 LMG 519 B 1 HETATM 27 C C19 LMG . . . KA 17 141.482 124.882 166.979 1 39.82 ? C19 LMG 519 B 1 HETATM 28 C C20 LMG . . . KA 17 141.505 124.3 165.586 1 39.82 ? C20 LMG 519 B 1 HETATM 29 C C21 LMG . . . KA 17 140.564 125.079 164.698 1 39.82 ? C21 LMG 519 B 1 HETATM 30 C C22 LMG . . . KA 17 140.468 124.773 163.408 1 39.82 ? C22 LMG 519 B 1 HETATM 31 C C23 LMG . . . KA 17 139.529 125.545 162.512 1 39.82 ? C23 LMG 519 B 1 HETATM 32 C C24 LMG . . . KA 17 139.63 125.008 161.105 1 39.82 ? C24 LMG 519 B 1 HETATM 33 C C25 LMG . . . KA 17 138.893 125.539 160.134 1 39.82 ? C25 LMG 519 B 1 HETATM 34 O O8 LMG . . . KA 17 150.409 117.628 166.455 1 39.82 ? O8 LMG 519 B 1 HETATM 35 C C28 LMG . . . KA 17 150.52 116.932 165.327 1 39.82 ? C28 LMG 519 B 1 HETATM 36 O O10 LMG . . . KA 17 151.63 116.746 164.856 1 39.82 ? O10 LMG 519 B 1 HETATM 37 C C29 LMG . . . KA 17 149.294 116.383 164.636 1 39.82 ? C29 LMG 519 B 1 HETATM 38 C C30 LMG . . . KA 17 148.471 117.516 164.032 1 39.82 ? C30 LMG 519 B 1 HETATM 39 C C31 LMG . . . KA 17 147.508 118.115 165.05 1 39.82 ? C31 LMG 519 B 1 HETATM 40 C C32 LMG . . . KA 17 146.589 119.139 164.397 1 39.82 ? C32 LMG 519 B 1 HETATM 41 C C33 LMG . . . KA 17 145.75 118.498 163.299 1 39.82 ? C33 LMG 519 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #