data_8R2I # _model_server_result.job_id yCY9CoYJ-3OzA1c4KOrthA _model_server_result.datetime_utc '2024-10-20 01:31:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":522}' # _entry.id 8R2I # _exptl.entry_id 8R2I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 722.97 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R2I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 19 _struct_asym.id NA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 L FE FE2 . A FE2 401 1_555 D NE2 HIS 212 D HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc2 L FE FE2 . A FE2 401 1_555 D NE2 HIS 266 D HIS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc3 L FE FE2 . A FE2 401 1_555 IB O3 BCT . D BCT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc4 N MG CLA . A CLA 403 1_555 RB O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 S MG CLA . B CLA 501 1_555 SB O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 BA MG CLA . B CLA 510 1_555 SB O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C OD1 ASN 7 C ASN 27 1_555 YA MG CLA . C CLA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc8 UA MG CLA . C CLA 507 1_555 TB O HOH . C HOH 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc9 GB MG CLA . D CLA 401 1_555 UB O HOH . D HOH 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 E NE2 HIS 17 E HIS 23 1_555 OB FE HEM . E HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 OB FE HEM . E HEM 101 1_555 F NE2 HIS 12 F HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? # _chem_comp.formula 'C38 H75 O10 P' _chem_comp.formula_weight 722.97 _chem_comp.id LHG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LHG sing 733 n n O1 HO1 LHG sing 734 n n C1 C2 LHG sing 735 n n C1 HC11 LHG sing 736 n n C1 HC12 LHG sing 737 n n C2 O2 LHG sing 738 n n C2 C3 LHG sing 739 n n C2 HC2 LHG sing 740 n n O2 H02 LHG sing 741 n n C3 O3 LHG sing 742 n n C3 HC31 LHG sing 743 n n C3 HC32 LHG sing 744 n n O3 P LHG sing 745 n n P O4 LHG sing 746 n n P O5 LHG doub 747 n n P O6 LHG sing 748 n n O4 HO4 LHG sing 749 n n O6 C4 LHG sing 750 n n C4 C5 LHG sing 751 n n C4 HC41 LHG sing 752 n n C4 HC42 LHG sing 753 n n C5 C6 LHG sing 754 n n C5 O7 LHG sing 755 n n C5 HC5 LHG sing 756 n n C6 O8 LHG sing 757 n n C6 HC61 LHG sing 758 n n C6 HC62 LHG sing 759 n n O7 C7 LHG sing 760 n n C7 O9 LHG doub 761 n n C7 C8 LHG sing 762 n n C8 C9 LHG sing 763 n n C8 HC81 LHG sing 764 n n C8 HC82 LHG sing 765 n n C9 C10 LHG sing 766 n n C9 HC91 LHG sing 767 n n C9 HC92 LHG sing 768 n n C10 C11 LHG sing 769 n n C10 H101 LHG sing 770 n n C10 H102 LHG sing 771 n n O8 C23 LHG sing 772 n n C23 O10 LHG doub 773 n n C23 C24 LHG sing 774 n n C24 C25 LHG sing 775 n n C24 H241 LHG sing 776 n n C24 H242 LHG sing 777 n n C11 C12 LHG sing 778 n n C11 H111 LHG sing 779 n n C11 H112 LHG sing 780 n n C12 C13 LHG sing 781 n n C12 H121 LHG sing 782 n n C12 H122 LHG sing 783 n n C13 C14 LHG sing 784 n n C13 H131 LHG sing 785 n n C13 H132 LHG sing 786 n n C14 C15 LHG sing 787 n n C14 H141 LHG sing 788 n n C14 H142 LHG sing 789 n n C15 C16 LHG sing 790 n n C15 H151 LHG sing 791 n n C15 H152 LHG sing 792 n n C16 C17 LHG sing 793 n n C16 H161 LHG sing 794 n n C16 H162 LHG sing 795 n n C17 C18 LHG sing 796 n n C17 H171 LHG sing 797 n n C17 H172 LHG sing 798 n n C18 C19 LHG sing 799 n n C18 H181 LHG sing 800 n n C18 H182 LHG sing 801 n n C19 C20 LHG sing 802 n n C19 H191 LHG sing 803 n n C19 H192 LHG sing 804 n n C20 C21 LHG sing 805 n n C20 H201 LHG sing 806 n n C20 H202 LHG sing 807 n n C21 C22 LHG sing 808 n n C21 H211 LHG sing 809 n n C21 H212 LHG sing 810 n n C22 H221 LHG sing 811 n n C22 H222 LHG sing 812 n n C22 H223 LHG sing 813 n n C25 C26 LHG sing 814 n n C25 H251 LHG sing 815 n n C25 H252 LHG sing 816 n n C26 C27 LHG sing 817 n n C26 H261 LHG sing 818 n n C26 H262 LHG sing 819 n n C27 C28 LHG sing 820 n n C27 H271 LHG sing 821 n n C27 H272 LHG sing 822 n n C28 C29 LHG sing 823 n n C28 H281 LHG sing 824 n n C28 H282 LHG sing 825 n n C29 C30 LHG sing 826 n n C29 H291 LHG sing 827 n n C29 H292 LHG sing 828 n n C30 C31 LHG sing 829 n n C30 H301 LHG sing 830 n n C30 H302 LHG sing 831 n n C31 C32 LHG sing 832 n n C31 H311 LHG sing 833 n n C31 H312 LHG sing 834 n n C32 C33 LHG sing 835 n n C32 H321 LHG sing 836 n n C32 H322 LHG sing 837 n n C33 C34 LHG sing 838 n n C33 H331 LHG sing 839 n n C33 H332 LHG sing 840 n n C34 C35 LHG sing 841 n n C34 H341 LHG sing 842 n n C34 H342 LHG sing 843 n n C35 C36 LHG sing 844 n n C35 H351 LHG sing 845 n n C35 H352 LHG sing 846 n n C36 C37 LHG sing 847 n n C36 H361 LHG sing 848 n n C36 H362 LHG sing 849 n n C37 C38 LHG sing 850 n n C37 H371 LHG sing 851 n n C37 H372 LHG sing 852 n n C38 H381 LHG sing 853 n n C38 H382 LHG sing 854 n n C38 H383 LHG sing 855 n n # _atom_sites.entry_id 8R2I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 FE2 A 1 401 402 FE2 FE2 . M 13 CLA A 1 402 405 CLA CLA . N 13 CLA A 1 403 407 CLA CLA . O 14 PHO A 1 404 408 PHO PHO . P 13 CLA A 1 405 410 CLA CLA . Q 15 BCR A 1 406 411 BCR BCR . R 16 BOG A 1 407 412 BOG BOG . S 13 CLA B 1 501 602 CLA CLA . T 13 CLA B 1 502 603 CLA CLA . U 13 CLA B 1 503 604 CLA CLA . V 13 CLA B 1 504 605 CLA CLA . W 13 CLA B 1 505 606 CLA CLA . X 13 CLA B 1 506 607 CLA CLA . Y 13 CLA B 1 507 608 CLA CLA . Z 13 CLA B 1 508 609 CLA CLA . AA 13 CLA B 1 509 610 CLA CLA . BA 13 CLA B 1 510 611 CLA CLA . CA 13 CLA B 1 511 612 CLA CLA . DA 13 CLA B 1 512 613 CLA CLA . EA 13 CLA B 1 513 614 CLA CLA . FA 13 CLA B 1 514 615 CLA CLA . GA 13 CLA B 1 515 616 CLA CLA . HA 13 CLA B 1 516 617 CLA CLA . IA 15 BCR B 1 517 619 BCR BCR . JA 15 BCR B 1 518 620 BCR BCR . KA 17 LMG B 1 519 622 LMG LMG . LA 18 LMT B 1 520 623 LMT LMT . MA 18 LMT B 1 521 624 LMT LMT . NA 19 LHG B 1 522 408 LHG LHG . OA 13 CLA C 1 501 501 CLA CLA . PA 13 CLA C 1 502 502 CLA CLA . QA 13 CLA C 1 503 503 CLA CLA . RA 13 CLA C 1 504 504 CLA CLA . SA 13 CLA C 1 505 505 CLA CLA . TA 13 CLA C 1 506 506 CLA CLA . UA 13 CLA C 1 507 507 CLA CLA . VA 13 CLA C 1 508 508 CLA CLA . WA 13 CLA C 1 509 509 CLA CLA . XA 13 CLA C 1 510 510 CLA CLA . YA 13 CLA C 1 511 511 CLA CLA . ZA 13 CLA C 1 512 512 CLA CLA . AB 13 CLA C 1 513 513 CLA CLA . BB 15 BCR C 1 514 514 BCR BCR . CB 15 BCR C 1 515 515 BCR BCR . DB 15 BCR C 1 516 517 BCR BCR . EB 20 DGD C 1 517 518 DGD DGD . FB 16 BOG C 1 518 519 BOG BOG . GB 13 CLA D 1 401 406 CLA CLA . HB 14 PHO D 1 402 409 PHO PHO . IB 21 BCT D 1 403 401 BCT BCT . JB 13 CLA D 1 404 402 CLA CLA . KB 13 CLA D 1 405 403 CLA CLA . LB 15 BCR D 1 406 404 BCR BCR . MB 22 PL9 D 1 407 405 PL9 PL9 . NB 16 BOG D 1 408 409 BOG BOG . OB 23 HEM E 1 101 101 HEM HEM . PB 15 BCR H 1 101 101 BCR BCR . QB 17 LMG H 1 102 102 LMG LMG . RB 24 HOH A 1 501 6002 HOH HOH . SB 24 HOH B 1 601 6002 HOH HOH . SB 24 HOH B 2 602 6001 HOH HOH . TB 24 HOH C 1 6001 6001 HOH HOH . UB 24 HOH D 1 6001 6001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LHG . . . NA 19 125.005 121.052 142.801 1 43.28 ? O1 LHG 522 B 1 HETATM 2 C C1 LHG . . . NA 19 124.242 121.697 143.826 1 43.28 ? C1 LHG 522 B 1 HETATM 3 C C2 LHG . . . NA 19 124.723 121.208 145.186 1 43.28 ? C2 LHG 522 B 1 HETATM 4 O O2 LHG . . . NA 19 125.428 119.972 145.027 1 43.28 ? O2 LHG 522 B 1 HETATM 5 C C3 LHG . . . NA 19 123.533 121 146.116 1 43.28 ? C3 LHG 522 B 1 HETATM 6 O O3 LHG . . . NA 19 123.877 121.519 147.397 1 43.28 ? O3 LHG 522 B 1 HETATM 7 P P LHG . . . NA 19 123.04 122.702 148.096 1 43.28 ? P LHG 522 B 1 HETATM 8 O O4 LHG . . . NA 19 122.188 123.375 147.049 1 43.28 ? O4 LHG 522 B 1 HETATM 9 O O5 LHG . . . NA 19 122.409 122.164 149.358 1 43.28 ? O5 LHG 522 B 1 HETATM 10 O O6 LHG . . . NA 19 124.225 123.707 148.507 1 43.28 ? O6 LHG 522 B 1 HETATM 11 C C4 LHG . . . NA 19 124.573 123.941 149.867 1 43.28 ? C4 LHG 522 B 1 HETATM 12 C C5 LHG . . . NA 19 126.067 124.243 149.908 1 43.28 ? C5 LHG 522 B 1 HETATM 13 C C6 LHG . . . NA 19 126.285 125.561 150.641 1 43.28 ? C6 LHG 522 B 1 HETATM 14 O O7 LHG . . . NA 19 126.785 123.188 150.552 1 43.28 ? O7 LHG 522 B 1 HETATM 15 C C7 LHG . . . NA 19 127.311 122.32 149.672 1 43.28 ? C7 LHG 522 B 1 HETATM 16 O O9 LHG . . . NA 19 126.659 121.98 148.7 1 43.28 ? O9 LHG 522 B 1 HETATM 17 C C8 LHG . . . NA 19 128.692 121.748 149.882 1 43.28 ? C8 LHG 522 B 1 HETATM 18 C C9 LHG . . . NA 19 128.854 121.287 151.324 1 43.28 ? C9 LHG 522 B 1 HETATM 19 C C10 LHG . . . NA 19 130.182 121.758 151.91 1 43.28 ? C10 LHG 522 B 1 HETATM 20 O O8 LHG . . . NA 19 127.398 126.255 150.083 1 43.28 ? O8 LHG 522 B 1 HETATM 21 C C23 LHG . . . NA 19 128.51 126.385 150.799 1 43.28 ? C23 LHG 522 B 1 HETATM 22 O O10 LHG . . . NA 19 128.669 125.678 151.779 1 43.28 ? O10 LHG 522 B 1 HETATM 23 C C24 LHG . . . NA 19 129.55 127.408 150.41 1 43.28 ? C24 LHG 522 B 1 HETATM 24 C C11 LHG . . . NA 19 130.629 123.085 151.307 1 43.28 ? C11 LHG 522 B 1 HETATM 25 C C12 LHG . . . NA 19 132.051 123.427 151.734 1 43.28 ? C12 LHG 522 B 1 HETATM 26 C C13 LHG . . . NA 19 133.078 122.596 150.976 1 43.28 ? C13 LHG 522 B 1 HETATM 27 C C14 LHG . . . NA 19 134.294 123.444 150.624 1 43.28 ? C14 LHG 522 B 1 HETATM 28 C C15 LHG . . . NA 19 134.97 123.959 151.889 1 43.28 ? C15 LHG 522 B 1 HETATM 29 C C16 LHG . . . NA 19 136.412 123.476 151.979 1 43.28 ? C16 LHG 522 B 1 HETATM 30 C C17 LHG . . . NA 19 137.012 123.813 153.339 1 43.28 ? C17 LHG 522 B 1 HETATM 31 C C25 LHG . . . NA 19 130.936 126.863 150.73 1 43.28 ? C25 LHG 522 B 1 HETATM 32 C C26 LHG . . . NA 19 131.896 127.992 151.081 1 43.28 ? C26 LHG 522 B 1 HETATM 33 C C27 LHG . . . NA 19 131.681 128.507 152.499 1 43.28 ? C27 LHG 522 B 1 HETATM 34 C C28 LHG . . . NA 19 132.697 127.897 153.456 1 43.28 ? C28 LHG 522 B 1 HETATM 35 C C29 LHG . . . NA 19 132.179 127.922 154.887 1 43.28 ? C29 LHG 522 B 1 HETATM 36 C C30 LHG . . . NA 19 132.769 126.773 155.693 1 43.28 ? C30 LHG 522 B 1 HETATM 37 C C31 LHG . . . NA 19 131.766 125.63 155.773 1 43.28 ? C31 LHG 522 B 1 HETATM 38 C C32 LHG . . . NA 19 132.443 124.3 156.076 1 43.28 ? C32 LHG 522 B 1 HETATM 39 C C33 LHG . . . NA 19 131.74 123.167 155.341 1 43.28 ? C33 LHG 522 B 1 HETATM 40 C C34 LHG . . . NA 19 131.327 122.059 156.301 1 43.28 ? C34 LHG 522 B 1 HETATM 41 C C35 LHG . . . NA 19 130.555 120.97 155.567 1 43.28 ? C35 LHG 522 B 1 HETATM 42 C C36 LHG . . . NA 19 129.091 121.361 155.397 1 43.28 ? C36 LHG 522 B 1 HETATM 43 C C37 LHG . . . NA 19 128.145 120.176 155.573 1 43.28 ? C37 LHG 522 B 1 HETATM 44 C C38 LHG . . . NA 19 128.814 118.855 155.26 1 43.28 ? C38 LHG 522 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #