data_8R2S # _model_server_result.job_id eV1UC6ebtilS3FRzTnTL9w _model_server_result.datetime_utc '2024-12-21 14:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8R2S # _exptl.entry_id 8R2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R2S _cell.length_a 51.61 _cell.length_b 74.834 _cell.length_c 156.906 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 135 n n CHA C4D HEM doub 136 n n CHA HHA HEM sing 137 n n CHB C4A HEM sing 138 n n CHB C1B HEM doub 139 n n CHB HHB HEM sing 140 n n CHC C4B HEM sing 141 n n CHC C1C HEM doub 142 n n CHC HHC HEM sing 143 n n CHD C4C HEM doub 144 n n CHD C1D HEM sing 145 n n CHD HHD HEM sing 146 n n C1A C2A HEM doub 147 n y C1A NA HEM sing 148 n y C2A C3A HEM sing 149 n y C2A CAA HEM sing 150 n n C3A C4A HEM doub 151 n y C3A CMA HEM sing 152 n n C4A NA HEM sing 153 n y CMA HMA HEM sing 154 n n CMA HMAA HEM sing 155 n n CMA HMAB HEM sing 156 n n CAA CBA HEM sing 157 n n CAA HAA HEM sing 158 n n CAA HAAA HEM sing 159 n n CBA CGA HEM sing 160 n n CBA HBA HEM sing 161 n n CBA HBAA HEM sing 162 n n CGA O1A HEM doub 163 n n CGA O2A HEM sing 164 n n C1B C2B HEM sing 165 n n C1B NB HEM sing 166 n n C2B C3B HEM doub 167 n n C2B CMB HEM sing 168 n n C3B C4B HEM sing 169 n n C3B CAB HEM sing 170 n n C4B NB HEM doub 171 n n CMB HMB HEM sing 172 n n CMB HMBA HEM sing 173 n n CMB HMBB HEM sing 174 n n CAB CBB HEM doub 175 n n CAB HAB HEM sing 176 n n CBB HBB HEM sing 177 n n CBB HBBA HEM sing 178 n n C1C C2C HEM sing 179 n y C1C NC HEM sing 180 n y C2C C3C HEM doub 181 n y C2C CMC HEM sing 182 n n C3C C4C HEM sing 183 n y C3C CAC HEM sing 184 n n C4C NC HEM sing 185 n y CMC HMC HEM sing 186 n n CMC HMCA HEM sing 187 n n CMC HMCB HEM sing 188 n n CAC CBC HEM doub 189 n n CAC HAC HEM sing 190 n n CBC HBC HEM sing 191 n n CBC HBCA HEM sing 192 n n C1D C2D HEM sing 193 n n C1D ND HEM doub 194 n n C2D C3D HEM doub 195 n n C2D CMD HEM sing 196 n n C3D C4D HEM sing 197 n n C3D CAD HEM sing 198 n n C4D ND HEM sing 199 n n CMD HMD HEM sing 200 n n CMD HMDA HEM sing 201 n n CMD HMDB HEM sing 202 n n CAD CBD HEM sing 203 n n CAD HAD HEM sing 204 n n CAD HADA HEM sing 205 n n CBD CGD HEM sing 206 n n CBD HBD HEM sing 207 n n CBD HBDA HEM sing 208 n n CGD O1D HEM doub 209 n n CGD O2D HEM sing 210 n n O2A H2A HEM sing 211 n n O2D H2D HEM sing 212 n n FE NA HEM sing 213 n n FE NB HEM sing 214 n n FE NC HEM sing 215 n n FE ND HEM sing 216 n n # _atom_sites.entry_id 8R2S _atom_sites.fract_transf_matrix[1][1] 0.019376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 401 401 HEM HEM . D 3 IND A 1 402 402 IND IND . E 4 PEG A 1 403 404 PEG PEG . F 4 PEG A 1 404 405 PEG PEG . G 5 ACT A 1 405 407 ACT ACT . H 4 PEG A 1 406 408 PEG PEG . I 4 PEG B 1 401 406 PEG PEG . J 4 PEG B 1 402 401 PEG PEG . K 4 PEG B 1 403 402 PEG PEG . L 4 PEG B 1 404 403 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 56.442 6.954 23.615 1 110.2 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . C 2 52.681 8.693 21.302 1 99.36 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . C 2 54.941 8.056 17.057 1 95.1 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . C 2 58.474 5.751 19.437 1 125.89 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . C 2 55.177 7.308 23.288 1 109.82 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . C 2 54.061 7.108 24.117 1 97.2 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . C 2 53.011 7.613 23.447 1 89.48 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . C 2 53.479 8.119 22.238 1 98.84 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . C 2 51.591 7.659 23.882 1 85.05 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . C 2 54.04 6.471 25.483 1 88.51 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . C 2 53.441 5.06 25.44 1 82.39 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . C 2 54.48 4.033 25.09 1 79.59 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . C 2 55.692 4.276 25.247 1 75.26 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . C 2 54.126 2.924 24.643 1 78.92 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . C 2 53.043 8.681 19.971 1 105.52 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . C 2 52.194 9.252 19.033 1 106.28 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . C 2 52.76 9.113 17.811 1 95.78 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . C 2 54.038 8.406 18.056 1 98.46 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . C 2 50.915 9.893 19.435 1 112.43 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . C 2 52.209 9.576 16.533 1 90.07 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . C 2 50.967 9.291 16.155 1 94.01 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . C 2 56.15 7.457 17.378 1 104.05 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . C 2 57.257 7.388 16.536 1 93.97 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . C 2 58.261 6.733 17.208 1 98.38 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . C 2 57.756 6.406 18.48 1 116.59 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . C 2 57.326 7.919 15.14 1 99.4 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . C 2 59.607 6.425 16.717 1 102.43 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . C 2 60.647 7.12 17.165 1 103.35 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . C 2 58.204 5.953 20.776 1 133.21 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . C 2 59.135 5.522 21.817 1 129 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . C 2 58.567 5.863 22.984 1 130.94 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . C 2 57.295 6.496 22.643 1 130.33 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . C 2 60.463 4.842 21.618 1 121.02 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . C 2 59.125 5.659 24.366 1 127.11 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . C 2 59.55 6.994 25.021 1 122.6 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . C 2 60.122 8.042 24.084 1 116.02 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . C 2 61.358 8.12 23.934 1 102.17 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . C 2 59.394 8.856 23.469 1 96.69 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . C 2 54.812 7.896 22.112 1 115.81 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . C 2 54.114 8.179 19.379 1 114.99 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . C 2 56.471 6.857 18.567 1 121.69 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . C 2 57.129 6.522 21.321 1 138.24 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . C 2 55.664 7.253 20.441 1 137.19 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #