data_8R39 # _model_server_result.job_id 1IQjpNdvqYVwQm0NYdFmJg _model_server_result.datetime_utc '2024-11-21 09:52:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8R39 # _exptl.entry_id 8R39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R39 _cell.length_a 78.444 _cell.length_b 78.444 _cell.length_c 105.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 171 C GLU 176 1_555 H NA NA . C NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc2 H NA NA . C NA 307 1_555 I O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 8R39 _atom_sites.fract_transf_matrix[1][1] 0.012748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL C 1 301 302 GOL GOL . C 2 GOL C 1 302 303 GOL GOL . D 3 MES C 1 303 304 MES MES . E 4 PEG C 1 304 305 PEG PEG . F 4 PEG C 1 305 307 PEG PEG . G 2 GOL C 1 306 308 GOL GOL . H 5 NA C 1 307 1 NA NA . I 6 HOH C 1 401 39 HOH HOH . I 6 HOH C 2 402 29 HOH HOH . I 6 HOH C 3 403 27 HOH HOH . I 6 HOH C 4 404 23 HOH HOH . I 6 HOH C 5 405 46 HOH HOH . I 6 HOH C 6 406 12 HOH HOH . I 6 HOH C 7 407 9 HOH HOH . I 6 HOH C 8 408 53 HOH HOH . I 6 HOH C 9 409 21 HOH HOH . I 6 HOH C 10 410 65 HOH HOH . I 6 HOH C 11 411 6 HOH HOH . I 6 HOH C 12 412 36 HOH HOH . I 6 HOH C 13 413 48 HOH HOH . I 6 HOH C 14 414 11 HOH HOH . I 6 HOH C 15 415 7 HOH HOH . I 6 HOH C 16 416 47 HOH HOH . I 6 HOH C 17 417 34 HOH HOH . I 6 HOH C 18 418 10 HOH HOH . I 6 HOH C 19 419 5 HOH HOH . I 6 HOH C 20 420 32 HOH HOH . I 6 HOH C 21 421 14 HOH HOH . I 6 HOH C 22 422 20 HOH HOH . I 6 HOH C 23 423 15 HOH HOH . I 6 HOH C 24 424 18 HOH HOH . I 6 HOH C 25 425 33 HOH HOH . I 6 HOH C 26 426 60 HOH HOH . I 6 HOH C 27 427 13 HOH HOH . I 6 HOH C 28 428 49 HOH HOH . I 6 HOH C 29 429 31 HOH HOH . I 6 HOH C 30 430 1 HOH HOH . I 6 HOH C 31 431 45 HOH HOH . I 6 HOH C 32 432 67 HOH HOH . I 6 HOH C 33 433 41 HOH HOH . I 6 HOH C 34 434 3 HOH HOH . I 6 HOH C 35 435 30 HOH HOH . I 6 HOH C 36 436 8 HOH HOH . I 6 HOH C 37 437 17 HOH HOH . I 6 HOH C 38 438 51 HOH HOH . I 6 HOH C 39 439 62 HOH HOH . I 6 HOH C 40 440 42 HOH HOH . I 6 HOH C 41 441 63 HOH HOH . I 6 HOH C 42 442 25 HOH HOH . I 6 HOH C 43 443 38 HOH HOH . I 6 HOH C 44 444 64 HOH HOH . I 6 HOH C 45 445 71 HOH HOH . I 6 HOH C 46 446 70 HOH HOH . I 6 HOH C 47 447 68 HOH HOH . I 6 HOH C 48 448 56 HOH HOH . I 6 HOH C 49 449 4 HOH HOH . I 6 HOH C 50 450 22 HOH HOH . I 6 HOH C 51 451 59 HOH HOH . I 6 HOH C 52 452 44 HOH HOH . I 6 HOH C 53 453 24 HOH HOH . I 6 HOH C 54 454 73 HOH HOH . I 6 HOH C 55 455 69 HOH HOH . I 6 HOH C 56 456 55 HOH HOH . I 6 HOH C 57 457 52 HOH HOH . I 6 HOH C 58 458 28 HOH HOH . I 6 HOH C 59 459 43 HOH HOH . I 6 HOH C 60 460 57 HOH HOH . I 6 HOH C 61 461 54 HOH HOH . I 6 HOH C 62 462 40 HOH HOH . I 6 HOH C 63 463 61 HOH HOH . I 6 HOH C 64 464 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -25.759 -2.169 -3.42 1 70.14 ? C1 GOL 302 C 1 HETATM 2 O O1 GOL . . . C 2 -26.467 -1.745 -2.255 1 74.43 ? O1 GOL 302 C 1 HETATM 3 C C2 GOL . . . C 2 -26.596 -3.27 -4.141 1 59.47 ? C2 GOL 302 C 1 HETATM 4 O O2 GOL . . . C 2 -26.013 -3.637 -5.373 1 69.9 ? O2 GOL 302 C 1 HETATM 5 C C3 GOL . . . C 2 -26.656 -4.423 -3.175 1 68.23 ? C3 GOL 302 C 1 HETATM 6 O O3 GOL . . . C 2 -26.218 -5.533 -3.897 1 75.68 ? O3 GOL 302 C 1 HETATM 7 H H11 GOL . . . C 2 -24.885 -2.53 -3.208 1 84.21 ? H11 GOL 302 C 1 HETATM 8 H H12 GOL . . . C 2 -25.602 -1.439 -4.04 1 84.21 ? H12 GOL 302 C 1 HETATM 9 H HO1 GOL . . . C 2 -26.074 -1.047 -1.965 1 89.37 ? HO1 GOL 302 C 1 HETATM 10 H H2 GOL . . . C 2 -27.488 -2.945 -4.34 1 71.41 ? H2 GOL 302 C 1 HETATM 11 H HO2 GOL . . . C 2 -25.756 -4.444 -5.314 1 83.92 ? HO2 GOL 302 C 1 HETATM 12 H H31 GOL . . . C 2 -27.56 -4.511 -2.835 1 81.92 ? H31 GOL 302 C 1 HETATM 13 H H32 GOL . . . C 2 -26.109 -4.222 -2.4 1 81.92 ? H32 GOL 302 C 1 HETATM 14 H HO3 GOL . . . C 2 -26.129 -6.172 -3.34 1 90.86 ? HO3 GOL 302 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #