data_8R39 # _model_server_result.job_id REKjUjP0gGMuEJh15SinrQ _model_server_result.datetime_utc '2024-11-21 09:56:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8R39 # _exptl.entry_id 8R39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R39 _cell.length_a 78.444 _cell.length_b 78.444 _cell.length_c 105.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 171 C GLU 176 1_555 H NA NA . C NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc2 H NA NA . C NA 307 1_555 I O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 8R39 _atom_sites.fract_transf_matrix[1][1] 0.012748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL C 1 301 302 GOL GOL . C 2 GOL C 1 302 303 GOL GOL . D 3 MES C 1 303 304 MES MES . E 4 PEG C 1 304 305 PEG PEG . F 4 PEG C 1 305 307 PEG PEG . G 2 GOL C 1 306 308 GOL GOL . H 5 NA C 1 307 1 NA NA . I 6 HOH C 1 401 39 HOH HOH . I 6 HOH C 2 402 29 HOH HOH . I 6 HOH C 3 403 27 HOH HOH . I 6 HOH C 4 404 23 HOH HOH . I 6 HOH C 5 405 46 HOH HOH . I 6 HOH C 6 406 12 HOH HOH . I 6 HOH C 7 407 9 HOH HOH . I 6 HOH C 8 408 53 HOH HOH . I 6 HOH C 9 409 21 HOH HOH . I 6 HOH C 10 410 65 HOH HOH . I 6 HOH C 11 411 6 HOH HOH . I 6 HOH C 12 412 36 HOH HOH . I 6 HOH C 13 413 48 HOH HOH . I 6 HOH C 14 414 11 HOH HOH . I 6 HOH C 15 415 7 HOH HOH . I 6 HOH C 16 416 47 HOH HOH . I 6 HOH C 17 417 34 HOH HOH . I 6 HOH C 18 418 10 HOH HOH . I 6 HOH C 19 419 5 HOH HOH . I 6 HOH C 20 420 32 HOH HOH . I 6 HOH C 21 421 14 HOH HOH . I 6 HOH C 22 422 20 HOH HOH . I 6 HOH C 23 423 15 HOH HOH . I 6 HOH C 24 424 18 HOH HOH . I 6 HOH C 25 425 33 HOH HOH . I 6 HOH C 26 426 60 HOH HOH . I 6 HOH C 27 427 13 HOH HOH . I 6 HOH C 28 428 49 HOH HOH . I 6 HOH C 29 429 31 HOH HOH . I 6 HOH C 30 430 1 HOH HOH . I 6 HOH C 31 431 45 HOH HOH . I 6 HOH C 32 432 67 HOH HOH . I 6 HOH C 33 433 41 HOH HOH . I 6 HOH C 34 434 3 HOH HOH . I 6 HOH C 35 435 30 HOH HOH . I 6 HOH C 36 436 8 HOH HOH . I 6 HOH C 37 437 17 HOH HOH . I 6 HOH C 38 438 51 HOH HOH . I 6 HOH C 39 439 62 HOH HOH . I 6 HOH C 40 440 42 HOH HOH . I 6 HOH C 41 441 63 HOH HOH . I 6 HOH C 42 442 25 HOH HOH . I 6 HOH C 43 443 38 HOH HOH . I 6 HOH C 44 444 64 HOH HOH . I 6 HOH C 45 445 71 HOH HOH . I 6 HOH C 46 446 70 HOH HOH . I 6 HOH C 47 447 68 HOH HOH . I 6 HOH C 48 448 56 HOH HOH . I 6 HOH C 49 449 4 HOH HOH . I 6 HOH C 50 450 22 HOH HOH . I 6 HOH C 51 451 59 HOH HOH . I 6 HOH C 52 452 44 HOH HOH . I 6 HOH C 53 453 24 HOH HOH . I 6 HOH C 54 454 73 HOH HOH . I 6 HOH C 55 455 69 HOH HOH . I 6 HOH C 56 456 55 HOH HOH . I 6 HOH C 57 457 52 HOH HOH . I 6 HOH C 58 458 28 HOH HOH . I 6 HOH C 59 459 43 HOH HOH . I 6 HOH C 60 460 57 HOH HOH . I 6 HOH C 61 461 54 HOH HOH . I 6 HOH C 62 462 40 HOH HOH . I 6 HOH C 63 463 61 HOH HOH . I 6 HOH C 64 464 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . D 3 -36.813 -5.532 -1.233 1 67.32 ? O1 MES 303 C 1 HETATM 2 C C2 MES . . . D 3 -37.713 -6.395 -0.565 1 47.42 ? C2 MES 303 C 1 HETATM 3 C C3 MES . . . D 3 -39.133 -5.984 -0.811 1 31.74 ? C3 MES 303 C 1 HETATM 4 N N4 MES . . . D 3 -39.333 -4.608 -0.285 1 9 ? N4 MES 303 C 1 HETATM 5 C C5 MES . . . D 3 -38.357 -3.699 -0.954 1 51.21 ? C5 MES 303 C 1 HETATM 6 C C6 MES . . . D 3 -36.956 -4.208 -0.746 1 54.78 ? C6 MES 303 C 1 HETATM 7 C C7 MES . . . D 3 -40.748 -4.151 -0.474 1 38.1 ? C7 MES 303 C 1 HETATM 8 C C8 MES . . . D 3 -41.249 -3.244 0.642 1 19.77 ? C8 MES 303 C 1 HETATM 9 S S MES . . . D 3 -41.057 -1.5 0.346 1 19.97 ? S MES 303 C 1 HETATM 10 O O1S MES . . . D 3 -40.721 -1.398 -1.025 1 61.02 ? O1S MES 303 C 1 HETATM 11 O O2S MES . . . D 3 -42.308 -0.878 0.627 1 26.32 ? O2S MES 303 C 1 HETATM 12 O O3S MES . . . D 3 -40.038 -1.063 1.229 1 56.14 ? O3S MES 303 C 1 HETATM 13 H H21 MES . . . D 3 -37.532 -6.365 0.391 1 56.95 ? H21 MES 303 C 1 HETATM 14 H H22 MES . . . D 3 -37.578 -7.309 -0.877 1 56.95 ? H22 MES 303 C 1 HETATM 15 H H31 MES . . . D 3 -39.744 -6.592 -0.361 1 38.13 ? H31 MES 303 C 1 HETATM 16 H H32 MES . . . D 3 -39.325 -5.99 -1.766 1 38.13 ? H32 MES 303 C 1 HETATM 17 H HN4 MES . . . D 3 -39.149 -4.615 0.607 1 10.85 ? HN4 MES 303 C 1 HETATM 18 H H51 MES . . . D 3 -38.561 -3.659 -1.906 1 61.49 ? H51 MES 303 C 1 HETATM 19 H H52 MES . . . D 3 -38.446 -2.807 -0.577 1 61.49 ? H52 MES 303 C 1 HETATM 20 H H61 MES . . . D 3 -36.329 -3.625 -1.211 1 65.78 ? H61 MES 303 C 1 HETATM 21 H H62 MES . . . D 3 -36.744 -4.191 0.205 1 65.78 ? H62 MES 303 C 1 HETATM 22 H H71 MES . . . D 3 -41.32 -4.991 -0.507 1 45.76 ? H71 MES 303 C 1 HETATM 23 H H72 MES . . . D 3 -40.806 -3.711 -1.386 1 45.76 ? H72 MES 303 C 1 HETATM 24 H H81 MES . . . D 3 -42.196 -3.403 0.802 1 23.77 ? H81 MES 303 C 1 HETATM 25 H H82 MES . . . D 3 -40.778 -3.445 1.471 1 23.77 ? H82 MES 303 C 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 451 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #