data_8R39 # _model_server_result.job_id ZxV8lIC2ZGmy9JfYO_jYlA _model_server_result.datetime_utc '2024-11-21 09:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 8R39 # _exptl.entry_id 8R39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R39 _cell.length_a 78.444 _cell.length_b 78.444 _cell.length_c 105.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 171 C GLU 176 1_555 H NA NA . C NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc2 H NA NA . C NA 307 1_555 I O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 262 n n C1 C2 PEG sing 263 n n C1 H11 PEG sing 264 n n C1 H12 PEG sing 265 n n O1 HO1 PEG sing 266 n n C2 O2 PEG sing 267 n n C2 H21 PEG sing 268 n n C2 H22 PEG sing 269 n n O2 C3 PEG sing 270 n n C3 C4 PEG sing 271 n n C3 H31 PEG sing 272 n n C3 H32 PEG sing 273 n n C4 O4 PEG sing 274 n n C4 H41 PEG sing 275 n n C4 H42 PEG sing 276 n n O4 HO4 PEG sing 277 n n # _atom_sites.entry_id 8R39 _atom_sites.fract_transf_matrix[1][1] 0.012748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL C 1 301 302 GOL GOL . C 2 GOL C 1 302 303 GOL GOL . D 3 MES C 1 303 304 MES MES . E 4 PEG C 1 304 305 PEG PEG . F 4 PEG C 1 305 307 PEG PEG . G 2 GOL C 1 306 308 GOL GOL . H 5 NA C 1 307 1 NA NA . I 6 HOH C 1 401 39 HOH HOH . I 6 HOH C 2 402 29 HOH HOH . I 6 HOH C 3 403 27 HOH HOH . I 6 HOH C 4 404 23 HOH HOH . I 6 HOH C 5 405 46 HOH HOH . I 6 HOH C 6 406 12 HOH HOH . I 6 HOH C 7 407 9 HOH HOH . I 6 HOH C 8 408 53 HOH HOH . I 6 HOH C 9 409 21 HOH HOH . I 6 HOH C 10 410 65 HOH HOH . I 6 HOH C 11 411 6 HOH HOH . I 6 HOH C 12 412 36 HOH HOH . I 6 HOH C 13 413 48 HOH HOH . I 6 HOH C 14 414 11 HOH HOH . I 6 HOH C 15 415 7 HOH HOH . I 6 HOH C 16 416 47 HOH HOH . I 6 HOH C 17 417 34 HOH HOH . I 6 HOH C 18 418 10 HOH HOH . I 6 HOH C 19 419 5 HOH HOH . I 6 HOH C 20 420 32 HOH HOH . I 6 HOH C 21 421 14 HOH HOH . I 6 HOH C 22 422 20 HOH HOH . I 6 HOH C 23 423 15 HOH HOH . I 6 HOH C 24 424 18 HOH HOH . I 6 HOH C 25 425 33 HOH HOH . I 6 HOH C 26 426 60 HOH HOH . I 6 HOH C 27 427 13 HOH HOH . I 6 HOH C 28 428 49 HOH HOH . I 6 HOH C 29 429 31 HOH HOH . I 6 HOH C 30 430 1 HOH HOH . I 6 HOH C 31 431 45 HOH HOH . I 6 HOH C 32 432 67 HOH HOH . I 6 HOH C 33 433 41 HOH HOH . I 6 HOH C 34 434 3 HOH HOH . I 6 HOH C 35 435 30 HOH HOH . I 6 HOH C 36 436 8 HOH HOH . I 6 HOH C 37 437 17 HOH HOH . I 6 HOH C 38 438 51 HOH HOH . I 6 HOH C 39 439 62 HOH HOH . I 6 HOH C 40 440 42 HOH HOH . I 6 HOH C 41 441 63 HOH HOH . I 6 HOH C 42 442 25 HOH HOH . I 6 HOH C 43 443 38 HOH HOH . I 6 HOH C 44 444 64 HOH HOH . I 6 HOH C 45 445 71 HOH HOH . I 6 HOH C 46 446 70 HOH HOH . I 6 HOH C 47 447 68 HOH HOH . I 6 HOH C 48 448 56 HOH HOH . I 6 HOH C 49 449 4 HOH HOH . I 6 HOH C 50 450 22 HOH HOH . I 6 HOH C 51 451 59 HOH HOH . I 6 HOH C 52 452 44 HOH HOH . I 6 HOH C 53 453 24 HOH HOH . I 6 HOH C 54 454 73 HOH HOH . I 6 HOH C 55 455 69 HOH HOH . I 6 HOH C 56 456 55 HOH HOH . I 6 HOH C 57 457 52 HOH HOH . I 6 HOH C 58 458 28 HOH HOH . I 6 HOH C 59 459 43 HOH HOH . I 6 HOH C 60 460 57 HOH HOH . I 6 HOH C 61 461 54 HOH HOH . I 6 HOH C 62 462 40 HOH HOH . I 6 HOH C 63 463 61 HOH HOH . I 6 HOH C 64 464 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 4 19.827 6.618 -20.693 1 82.06 ? C1 PEG 305 C 1 HETATM 2 O O1 PEG . . . F 4 19.17 7.403 -21.679 1 67.61 ? O1 PEG 305 C 1 HETATM 3 C C2 PEG . . . F 4 19.361 5.199 -20.721 1 79.81 ? C2 PEG 305 C 1 HETATM 4 O O2 PEG . . . F 4 19.482 4.648 -19.421 1 83.49 ? O2 PEG 305 C 1 HETATM 5 C C3 PEG . . . F 4 20.543 3.72 -19.322 1 90.12 ? C3 PEG 305 C 1 HETATM 6 C C4 PEG . . . F 4 21.844 4.456 -19.354 1 84.35 ? C4 PEG 305 C 1 HETATM 7 O O4 PEG . . . F 4 22.74 3.891 -18.418 1 70.5 ? O4 PEG 305 C 1 HETATM 8 H H11 PEG . . . F 4 20.782 6.639 -20.859 1 98.52 ? H11 PEG 305 C 1 HETATM 9 H H12 PEG . . . F 4 19.642 6.993 -19.817 1 98.52 ? H12 PEG 305 C 1 HETATM 10 H HO1 PEG . . . F 4 19.379 8.226 -21.662 1 81.18 ? HO1 PEG 305 C 1 HETATM 11 H H21 PEG . . . F 4 19.905 4.69 -21.342 1 95.82 ? H21 PEG 305 C 1 HETATM 12 H H22 PEG . . . F 4 18.433 5.167 -21.003 1 95.82 ? H22 PEG 305 C 1 HETATM 13 H H31 PEG . . . F 4 20.469 3.229 -18.489 1 108.18 ? H31 PEG 305 C 1 HETATM 14 H H32 PEG . . . F 4 20.503 3.1 -20.067 1 108.18 ? H32 PEG 305 C 1 HETATM 15 H H41 PEG . . . F 4 22.227 4.395 -20.243 1 101.27 ? H41 PEG 305 C 1 HETATM 16 H H42 PEG . . . F 4 21.692 5.388 -19.131 1 101.27 ? H42 PEG 305 C 1 HETATM 17 H HO4 PEG . . . F 4 23.509 4.247 -18.423 1 84.65 ? HO4 PEG 305 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #