data_8R39 # _model_server_result.job_id S6OxX3EE7Kxm2P1AEJ8WnA _model_server_result.datetime_utc '2024-11-21 09:55:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 8R39 # _exptl.entry_id 8R39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R39 _cell.length_a 78.444 _cell.length_b 78.444 _cell.length_c 105.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 171 C GLU 176 1_555 H NA NA . C NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc2 H NA NA . C NA 307 1_555 I O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8R39 _atom_sites.fract_transf_matrix[1][1] 0.012748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL C 1 301 302 GOL GOL . C 2 GOL C 1 302 303 GOL GOL . D 3 MES C 1 303 304 MES MES . E 4 PEG C 1 304 305 PEG PEG . F 4 PEG C 1 305 307 PEG PEG . G 2 GOL C 1 306 308 GOL GOL . H 5 NA C 1 307 1 NA NA . I 6 HOH C 1 401 39 HOH HOH . I 6 HOH C 2 402 29 HOH HOH . I 6 HOH C 3 403 27 HOH HOH . I 6 HOH C 4 404 23 HOH HOH . I 6 HOH C 5 405 46 HOH HOH . I 6 HOH C 6 406 12 HOH HOH . I 6 HOH C 7 407 9 HOH HOH . I 6 HOH C 8 408 53 HOH HOH . I 6 HOH C 9 409 21 HOH HOH . I 6 HOH C 10 410 65 HOH HOH . I 6 HOH C 11 411 6 HOH HOH . I 6 HOH C 12 412 36 HOH HOH . I 6 HOH C 13 413 48 HOH HOH . I 6 HOH C 14 414 11 HOH HOH . I 6 HOH C 15 415 7 HOH HOH . I 6 HOH C 16 416 47 HOH HOH . I 6 HOH C 17 417 34 HOH HOH . I 6 HOH C 18 418 10 HOH HOH . I 6 HOH C 19 419 5 HOH HOH . I 6 HOH C 20 420 32 HOH HOH . I 6 HOH C 21 421 14 HOH HOH . I 6 HOH C 22 422 20 HOH HOH . I 6 HOH C 23 423 15 HOH HOH . I 6 HOH C 24 424 18 HOH HOH . I 6 HOH C 25 425 33 HOH HOH . I 6 HOH C 26 426 60 HOH HOH . I 6 HOH C 27 427 13 HOH HOH . I 6 HOH C 28 428 49 HOH HOH . I 6 HOH C 29 429 31 HOH HOH . I 6 HOH C 30 430 1 HOH HOH . I 6 HOH C 31 431 45 HOH HOH . I 6 HOH C 32 432 67 HOH HOH . I 6 HOH C 33 433 41 HOH HOH . I 6 HOH C 34 434 3 HOH HOH . I 6 HOH C 35 435 30 HOH HOH . I 6 HOH C 36 436 8 HOH HOH . I 6 HOH C 37 437 17 HOH HOH . I 6 HOH C 38 438 51 HOH HOH . I 6 HOH C 39 439 62 HOH HOH . I 6 HOH C 40 440 42 HOH HOH . I 6 HOH C 41 441 63 HOH HOH . I 6 HOH C 42 442 25 HOH HOH . I 6 HOH C 43 443 38 HOH HOH . I 6 HOH C 44 444 64 HOH HOH . I 6 HOH C 45 445 71 HOH HOH . I 6 HOH C 46 446 70 HOH HOH . I 6 HOH C 47 447 68 HOH HOH . I 6 HOH C 48 448 56 HOH HOH . I 6 HOH C 49 449 4 HOH HOH . I 6 HOH C 50 450 22 HOH HOH . I 6 HOH C 51 451 59 HOH HOH . I 6 HOH C 52 452 44 HOH HOH . I 6 HOH C 53 453 24 HOH HOH . I 6 HOH C 54 454 73 HOH HOH . I 6 HOH C 55 455 69 HOH HOH . I 6 HOH C 56 456 55 HOH HOH . I 6 HOH C 57 457 52 HOH HOH . I 6 HOH C 58 458 28 HOH HOH . I 6 HOH C 59 459 43 HOH HOH . I 6 HOH C 60 460 57 HOH HOH . I 6 HOH C 61 461 54 HOH HOH . I 6 HOH C 62 462 40 HOH HOH . I 6 HOH C 63 463 61 HOH HOH . I 6 HOH C 64 464 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x -36.407 _atom_site.Cartn_y 14.632 _atom_site.Cartn_z -16.711 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 307 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 690 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #