data_8R3B
#
_model_server_result.job_id            PydgVp8L4ekGzdImnxPIEQ 
_model_server_result.datetime_utc      '2024-11-08 01:44:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r3b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":103}' 
#
_entry.id    8R3B 
#
_exptl.entry_id    8R3B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8R3B 
_cell.length_a            52.084 
_cell.length_b            52.084 
_cell.length_c            177.488 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R3B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NDG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDG sing 339 n n 
C1 O5 NDG sing 340 n n 
C1 O1 NDG sing 341 n n 
C1 H1 NDG sing 342 n n 
C2 C3 NDG sing 343 n n 
C2 N2 NDG sing 344 n n 
C2 H2 NDG sing 345 n n 
C3 C4 NDG sing 346 n n 
C3 O3 NDG sing 347 n n 
C3 H3 NDG sing 348 n n 
C4 C5 NDG sing 349 n n 
C4 O4 NDG sing 350 n n 
C4 H4 NDG sing 351 n n 
C5 C6 NDG sing 352 n n 
C5 O5 NDG sing 353 n n 
C5 H5 NDG sing 354 n n 
C6 O6 NDG sing 355 n n 
C6 H61 NDG sing 356 n n 
C6 H62 NDG sing 357 n n 
C7 C8 NDG sing 358 n n 
C7 O7 NDG doub 359 n n 
C7 N2 NDG sing 360 n n 
C8 H81 NDG sing 361 n n 
C8 H82 NDG sing 362 n n 
C8 H83 NDG sing 363 n n 
O3 HO3 NDG sing 364 n n 
O4 HO4 NDG sing 365 n n 
O6 HO6 NDG sing 366 n n 
N2 HN2 NDG sing 367 n n 
O1 HO1 NDG sing 368 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 
NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8R3B 
_atom_sites.fract_transf_matrix[1][1]    0.0192 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0192 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 EVB A 1 101 101 EVB EVB . 
G 3 NDG A 1 102 102 NDG NDG . 
H 3 NDG A 1 103 101 NDG NDG . 
I 3 NDG E 1 101 101 NDG NDG . 
J 3 NDG C 1 101 101 NDG NDG . 
K 3 NDG C 1 102 101 NDG NDG . 
L 4 HOH A 1 201 62 HOH HOH . 
L 4 HOH A 2 202 37 HOH HOH . 
L 4 HOH A 3 203 45 HOH HOH . 
L 4 HOH A 4 204 128 HOH HOH . 
L 4 HOH A 5 205 56 HOH HOH . 
L 4 HOH A 6 206 15 HOH HOH . 
L 4 HOH A 7 207 72 HOH HOH . 
L 4 HOH A 8 208 118 HOH HOH . 
L 4 HOH A 9 209 59 HOH HOH . 
L 4 HOH A 10 210 108 HOH HOH . 
L 4 HOH A 11 211 18 HOH HOH . 
L 4 HOH A 12 212 35 HOH HOH . 
L 4 HOH A 13 213 96 HOH HOH . 
L 4 HOH A 14 214 78 HOH HOH . 
L 4 HOH A 15 215 117 HOH HOH . 
L 4 HOH A 16 216 74 HOH HOH . 
L 4 HOH A 17 217 46 HOH HOH . 
L 4 HOH A 18 218 122 HOH HOH . 
L 4 HOH A 19 219 89 HOH HOH . 
L 4 HOH A 20 220 134 HOH HOH . 
L 4 HOH A 21 221 49 HOH HOH . 
L 4 HOH A 22 222 39 HOH HOH . 
L 4 HOH A 23 223 44 HOH HOH . 
L 4 HOH A 24 224 73 HOH HOH . 
L 4 HOH A 25 225 38 HOH HOH . 
L 4 HOH A 26 226 136 HOH HOH . 
L 4 HOH A 27 227 104 HOH HOH . 
L 4 HOH A 28 228 131 HOH HOH . 
L 4 HOH A 29 229 94 HOH HOH . 
L 4 HOH A 30 230 57 HOH HOH . 
L 4 HOH A 31 231 129 HOH HOH . 
L 4 HOH A 32 232 23 HOH HOH . 
L 4 HOH A 33 233 102 HOH HOH . 
L 4 HOH A 34 234 114 HOH HOH . 
L 4 HOH A 35 235 42 HOH HOH . 
L 4 HOH A 36 236 106 HOH HOH . 
L 4 HOH A 37 237 64 HOH HOH . 
L 4 HOH A 38 238 111 HOH HOH . 
L 4 HOH A 39 239 4 HOH HOH . 
L 4 HOH A 40 240 41 HOH HOH . 
L 4 HOH A 41 241 51 HOH HOH . 
L 4 HOH A 42 242 144 HOH HOH . 
L 4 HOH A 43 243 142 HOH HOH . 
L 4 HOH A 44 244 100 HOH HOH . 
L 4 HOH A 45 245 147 HOH HOH . 
L 4 HOH A 46 246 126 HOH HOH . 
L 4 HOH A 47 247 127 HOH HOH . 
L 4 HOH A 48 248 151 HOH HOH . 
L 4 HOH A 49 249 86 HOH HOH . 
L 4 HOH A 50 250 119 HOH HOH . 
L 4 HOH A 51 251 5 HOH HOH . 
L 4 HOH A 52 252 3 HOH HOH . 
L 4 HOH A 53 253 107 HOH HOH . 
L 4 HOH A 54 254 153 HOH HOH . 
M 4 HOH B 1 101 130 HOH HOH . 
M 4 HOH B 2 102 103 HOH HOH . 
M 4 HOH B 3 103 54 HOH HOH . 
M 4 HOH B 4 104 105 HOH HOH . 
M 4 HOH B 5 105 30 HOH HOH . 
M 4 HOH B 6 106 24 HOH HOH . 
M 4 HOH B 7 107 67 HOH HOH . 
M 4 HOH B 8 108 58 HOH HOH . 
M 4 HOH B 9 109 65 HOH HOH . 
M 4 HOH B 10 110 156 HOH HOH . 
M 4 HOH B 11 111 81 HOH HOH . 
M 4 HOH B 12 112 132 HOH HOH . 
M 4 HOH B 13 113 115 HOH HOH . 
M 4 HOH B 14 114 76 HOH HOH . 
M 4 HOH B 15 115 87 HOH HOH . 
M 4 HOH B 16 116 83 HOH HOH . 
M 4 HOH B 17 117 155 HOH HOH . 
M 4 HOH B 18 118 88 HOH HOH . 
M 4 HOH B 19 119 28 HOH HOH . 
M 4 HOH B 20 120 53 HOH HOH . 
M 4 HOH B 21 121 21 HOH HOH . 
M 4 HOH B 22 122 84 HOH HOH . 
M 4 HOH B 23 123 80 HOH HOH . 
M 4 HOH B 24 124 31 HOH HOH . 
M 4 HOH B 25 125 6 HOH HOH . 
M 4 HOH B 26 126 143 HOH HOH . 
M 4 HOH B 27 127 77 HOH HOH . 
M 4 HOH B 28 128 123 HOH HOH . 
M 4 HOH B 29 129 137 HOH HOH . 
M 4 HOH B 30 130 110 HOH HOH . 
M 4 HOH B 31 131 68 HOH HOH . 
M 4 HOH B 32 132 1 HOH HOH . 
M 4 HOH B 33 133 8 HOH HOH . 
M 4 HOH B 34 134 113 HOH HOH . 
N 4 HOH E 1 201 61 HOH HOH . 
N 4 HOH E 2 202 29 HOH HOH . 
N 4 HOH E 3 203 138 HOH HOH . 
N 4 HOH E 4 204 26 HOH HOH . 
N 4 HOH E 5 205 48 HOH HOH . 
N 4 HOH E 6 206 7 HOH HOH . 
N 4 HOH E 7 207 133 HOH HOH . 
N 4 HOH E 8 208 92 HOH HOH . 
N 4 HOH E 9 209 149 HOH HOH . 
N 4 HOH E 10 210 82 HOH HOH . 
N 4 HOH E 11 211 50 HOH HOH . 
N 4 HOH E 12 212 75 HOH HOH . 
N 4 HOH E 13 213 120 HOH HOH . 
N 4 HOH E 14 214 55 HOH HOH . 
N 4 HOH E 15 215 154 HOH HOH . 
N 4 HOH E 16 216 140 HOH HOH . 
N 4 HOH E 17 217 20 HOH HOH . 
N 4 HOH E 18 218 36 HOH HOH . 
N 4 HOH E 19 219 135 HOH HOH . 
N 4 HOH E 20 220 158 HOH HOH . 
N 4 HOH E 21 221 11 HOH HOH . 
N 4 HOH E 22 222 97 HOH HOH . 
N 4 HOH E 23 223 139 HOH HOH . 
N 4 HOH E 24 224 116 HOH HOH . 
N 4 HOH E 25 225 17 HOH HOH . 
N 4 HOH E 26 226 19 HOH HOH . 
O 4 HOH D 1 101 69 HOH HOH . 
O 4 HOH D 2 102 60 HOH HOH . 
O 4 HOH D 3 103 16 HOH HOH . 
O 4 HOH D 4 104 40 HOH HOH . 
O 4 HOH D 5 105 109 HOH HOH . 
O 4 HOH D 6 106 25 HOH HOH . 
O 4 HOH D 7 107 43 HOH HOH . 
O 4 HOH D 8 108 91 HOH HOH . 
O 4 HOH D 9 109 63 HOH HOH . 
O 4 HOH D 10 110 47 HOH HOH . 
O 4 HOH D 11 111 101 HOH HOH . 
O 4 HOH D 12 112 95 HOH HOH . 
O 4 HOH D 13 113 71 HOH HOH . 
O 4 HOH D 14 114 93 HOH HOH . 
O 4 HOH D 15 115 32 HOH HOH . 
O 4 HOH D 16 116 14 HOH HOH . 
O 4 HOH D 17 117 79 HOH HOH . 
O 4 HOH D 18 118 121 HOH HOH . 
O 4 HOH D 19 119 2 HOH HOH . 
O 4 HOH D 20 120 22 HOH HOH . 
O 4 HOH D 21 121 124 HOH HOH . 
P 4 HOH C 1 201 85 HOH HOH . 
P 4 HOH C 2 202 33 HOH HOH . 
P 4 HOH C 3 203 27 HOH HOH . 
P 4 HOH C 4 204 34 HOH HOH . 
P 4 HOH C 5 205 98 HOH HOH . 
P 4 HOH C 6 206 152 HOH HOH . 
P 4 HOH C 7 207 52 HOH HOH . 
P 4 HOH C 8 208 70 HOH HOH . 
P 4 HOH C 9 209 90 HOH HOH . 
P 4 HOH C 10 210 145 HOH HOH . 
P 4 HOH C 11 211 66 HOH HOH . 
P 4 HOH C 12 212 12 HOH HOH . 
P 4 HOH C 13 213 141 HOH HOH . 
P 4 HOH C 14 214 157 HOH HOH . 
P 4 HOH C 15 215 112 HOH HOH . 
P 4 HOH C 16 216 146 HOH HOH . 
P 4 HOH C 17 217 125 HOH HOH . 
P 4 HOH C 18 218 9 HOH HOH . 
P 4 HOH C 19 219 148 HOH HOH . 
P 4 HOH C 20 220 10 HOH HOH . 
P 4 HOH C 21 221 13 HOH HOH . 
P 4 HOH C 22 222 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDG . . . H 3 9.646 4.731 -5.488 1 26.96 ? C1 NDG 103 A 1 
HETATM 2 C C2 NDG . . . H 3 8.508 4.625 -6.534 1 25.35 ? C2 NDG 103 A 1 
HETATM 3 C C3 NDG . . . H 3 8.189 6.001 -7.128 1 26.94 ? C3 NDG 103 A 1 
HETATM 4 C C4 NDG . . . H 3 7.896 7.002 -6.011 1 26.08 ? C4 NDG 103 A 1 
HETATM 5 C C5 NDG . . . H 3 9.045 7.011 -4.986 1 29.53 ? C5 NDG 103 A 1 
HETATM 6 C C6 NDG . . . H 3 8.744 7.877 -3.752 1 28.9 ? C6 NDG 103 A 1 
HETATM 7 C C7 NDG . . . H 3 8.291 2.399 -7.546 1 24.51 ? C7 NDG 103 A 1 
HETATM 8 C C8 NDG . . . H 3 8.607 1.529 -8.757 1 24.77 ? C8 NDG 103 A 1 
HETATM 9 O O5 NDG . . . H 3 9.289 5.688 -4.492 1 27.2 ? O5 NDG 103 A 1 
HETATM 10 O O3 NDG . . . H 3 7.05 5.84 -7.972 1 25.41 ? O3 NDG 103 A 1 
HETATM 11 O O4 NDG . . . H 3 7.661 8.284 -6.604 1 26.45 ? O4 NDG 103 A 1 
HETATM 12 O O6 NDG . . . H 3 9.923 7.993 -2.933 1 34.12 ? O6 NDG 103 A 1 
HETATM 13 O O7 NDG . . . H 3 7.691 1.985 -6.561 1 23.56 ? O7 NDG 103 A 1 
HETATM 14 N N2 NDG . . . H 3 8.74 3.684 -7.62 1 22.06 ? N2 NDG 103 A 1 
HETATM 15 O O1 NDG . . . H 3 10.819 5.131 -6.149 1 28.01 ? O1 NDG 103 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#