data_8R41
#
_model_server_result.job_id            -WLH_Thx7wa8x4NWWk8_Bw 
_model_server_result.datetime_utc      '2024-11-22 08:07:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r41 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":405}' 
#
_entry.id    8R41 
#
_exptl.entry_id    8R41 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8R41 
_cell.length_a            109.36 
_cell.length_b            122.25 
_cell.length_c            136.73 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,R 1 1 
B,D,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 X 1 NAG X 402 NAG 
2 n C NAG 2 X 2 NAG X 403 NAG 
2 n D NAG 1 Y 1 NAG Y 402 NAG 
2 n D NAG 2 Y 2 NAG Y 403 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 26 B CYS 26 1_555 B SG CYS 51 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 60 A ASN 60 1_555 C C1 NAG . X NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 B ND2 ASN 60 B ASN 60 1_555 D C1 NAG . Y NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 C O4 NAG . X NAG 1 1_555 C C1 NAG . X NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 D O4 NAG . Y NAG 1 1_555 D C1 NAG . Y NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8R41 
_atom_sites.fract_transf_matrix[1][1]    0.009144 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00818 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007314 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 XUF A 1 401 8 XUF LIG . 
F 4 EDO A 1 402 2 EDO EDO . 
G 4 EDO A 1 403 6 EDO EDO . 
H 4 EDO A 1 404 7 EDO EDO . 
I 4 EDO A 1 405 9 EDO EDO . 
J 5 BR A 1 406 1 BR BR . 
K 5 BR A 1 407 2 BR BR . 
L 3 XUF B 1 401 1 XUF LIG . 
M 4 EDO B 1 402 1 EDO EDO . 
N 4 EDO B 1 403 3 EDO EDO . 
O 4 EDO B 1 404 4 EDO EDO . 
P 4 EDO B 1 405 10 EDO EDO . 
Q 4 EDO B 1 406 11 EDO EDO . 
R 6 HOH A 1 501 225 HOH HOH . 
R 6 HOH A 2 502 193 HOH HOH . 
R 6 HOH A 3 503 262 HOH HOH . 
R 6 HOH A 4 504 153 HOH HOH . 
R 6 HOH A 5 505 5 HOH HOH . 
R 6 HOH A 6 506 48 HOH HOH . 
R 6 HOH A 7 507 208 HOH HOH . 
R 6 HOH A 8 508 30 HOH HOH . 
R 6 HOH A 9 509 46 HOH HOH . 
R 6 HOH A 10 510 37 HOH HOH . 
R 6 HOH A 11 511 4 HOH HOH . 
R 6 HOH A 12 512 47 HOH HOH . 
R 6 HOH A 13 513 51 HOH HOH . 
R 6 HOH A 14 514 2 HOH HOH . 
R 6 HOH A 15 515 224 HOH HOH . 
R 6 HOH A 16 516 146 HOH HOH . 
R 6 HOH A 17 517 260 HOH HOH . 
R 6 HOH A 18 518 211 HOH HOH . 
R 6 HOH A 19 519 16 HOH HOH . 
R 6 HOH A 20 520 44 HOH HOH . 
R 6 HOH A 21 521 31 HOH HOH . 
R 6 HOH A 22 522 8 HOH HOH . 
R 6 HOH A 23 523 217 HOH HOH . 
R 6 HOH A 24 524 39 HOH HOH . 
R 6 HOH A 25 525 3 HOH HOH . 
R 6 HOH A 26 526 194 HOH HOH . 
R 6 HOH A 27 527 180 HOH HOH . 
R 6 HOH A 28 528 1 HOH HOH . 
R 6 HOH A 29 529 264 HOH HOH . 
R 6 HOH A 30 530 24 HOH HOH . 
R 6 HOH A 31 531 140 HOH HOH . 
R 6 HOH A 32 532 124 HOH HOH . 
R 6 HOH A 33 533 29 HOH HOH . 
R 6 HOH A 34 534 136 HOH HOH . 
R 6 HOH A 35 535 125 HOH HOH . 
R 6 HOH A 36 536 38 HOH HOH . 
R 6 HOH A 37 537 138 HOH HOH . 
R 6 HOH A 38 538 88 HOH HOH . 
R 6 HOH A 39 539 212 HOH HOH . 
R 6 HOH A 40 540 192 HOH HOH . 
R 6 HOH A 41 541 170 HOH HOH . 
R 6 HOH A 42 542 36 HOH HOH . 
R 6 HOH A 43 543 261 HOH HOH . 
R 6 HOH A 44 544 114 HOH HOH . 
R 6 HOH A 45 545 187 HOH HOH . 
R 6 HOH A 46 546 26 HOH HOH . 
R 6 HOH A 47 547 143 HOH HOH . 
R 6 HOH A 48 548 33 HOH HOH . 
R 6 HOH A 49 549 13 HOH HOH . 
R 6 HOH A 50 550 82 HOH HOH . 
R 6 HOH A 51 551 25 HOH HOH . 
R 6 HOH A 52 552 12 HOH HOH . 
R 6 HOH A 53 553 234 HOH HOH . 
R 6 HOH A 54 554 68 HOH HOH . 
R 6 HOH A 55 555 226 HOH HOH . 
R 6 HOH A 56 556 58 HOH HOH . 
R 6 HOH A 57 557 123 HOH HOH . 
R 6 HOH A 58 558 116 HOH HOH . 
R 6 HOH A 59 559 263 HOH HOH . 
R 6 HOH A 60 560 173 HOH HOH . 
R 6 HOH A 61 561 57 HOH HOH . 
R 6 HOH A 62 562 95 HOH HOH . 
R 6 HOH A 63 563 223 HOH HOH . 
R 6 HOH A 64 564 90 HOH HOH . 
R 6 HOH A 65 565 117 HOH HOH . 
R 6 HOH A 66 566 166 HOH HOH . 
R 6 HOH A 67 567 119 HOH HOH . 
R 6 HOH A 68 568 151 HOH HOH . 
R 6 HOH A 69 569 167 HOH HOH . 
R 6 HOH A 70 570 257 HOH HOH . 
R 6 HOH A 71 571 62 HOH HOH . 
R 6 HOH A 72 572 115 HOH HOH . 
R 6 HOH A 73 573 91 HOH HOH . 
R 6 HOH A 74 574 213 HOH HOH . 
R 6 HOH A 75 575 93 HOH HOH . 
R 6 HOH A 76 576 144 HOH HOH . 
R 6 HOH A 77 577 200 HOH HOH . 
R 6 HOH A 78 578 157 HOH HOH . 
R 6 HOH A 79 579 80 HOH HOH . 
R 6 HOH A 80 580 159 HOH HOH . 
R 6 HOH A 81 581 72 HOH HOH . 
R 6 HOH A 82 582 147 HOH HOH . 
R 6 HOH A 83 583 76 HOH HOH . 
R 6 HOH A 84 584 154 HOH HOH . 
R 6 HOH A 85 585 87 HOH HOH . 
R 6 HOH A 86 586 121 HOH HOH . 
R 6 HOH A 87 587 9 HOH HOH . 
R 6 HOH A 88 588 195 HOH HOH . 
R 6 HOH A 89 589 85 HOH HOH . 
R 6 HOH A 90 590 118 HOH HOH . 
R 6 HOH A 91 591 237 HOH HOH . 
R 6 HOH A 92 592 83 HOH HOH . 
R 6 HOH A 93 593 258 HOH HOH . 
R 6 HOH A 94 594 102 HOH HOH . 
S 6 HOH B 1 501 229 HOH HOH . 
S 6 HOH B 2 502 128 HOH HOH . 
S 6 HOH B 3 503 232 HOH HOH . 
S 6 HOH B 4 504 165 HOH HOH . 
S 6 HOH B 5 505 185 HOH HOH . 
S 6 HOH B 6 506 241 HOH HOH . 
S 6 HOH B 7 507 6 HOH HOH . 
S 6 HOH B 8 508 231 HOH HOH . 
S 6 HOH B 9 509 203 HOH HOH . 
S 6 HOH B 10 510 35 HOH HOH . 
S 6 HOH B 11 511 42 HOH HOH . 
S 6 HOH B 12 512 214 HOH HOH . 
S 6 HOH B 13 513 113 HOH HOH . 
S 6 HOH B 14 514 28 HOH HOH . 
S 6 HOH B 15 515 240 HOH HOH . 
S 6 HOH B 16 516 256 HOH HOH . 
S 6 HOH B 17 517 239 HOH HOH . 
S 6 HOH B 18 518 175 HOH HOH . 
S 6 HOH B 19 519 59 HOH HOH . 
S 6 HOH B 20 520 11 HOH HOH . 
S 6 HOH B 21 521 10 HOH HOH . 
S 6 HOH B 22 522 41 HOH HOH . 
S 6 HOH B 23 523 43 HOH HOH . 
S 6 HOH B 24 524 191 HOH HOH . 
S 6 HOH B 25 525 109 HOH HOH . 
S 6 HOH B 26 526 236 HOH HOH . 
S 6 HOH B 27 527 135 HOH HOH . 
S 6 HOH B 28 528 98 HOH HOH . 
S 6 HOH B 29 529 92 HOH HOH . 
S 6 HOH B 30 530 60 HOH HOH . 
S 6 HOH B 31 531 230 HOH HOH . 
S 6 HOH B 32 532 253 HOH HOH . 
S 6 HOH B 33 533 100 HOH HOH . 
S 6 HOH B 34 534 233 HOH HOH . 
S 6 HOH B 35 535 56 HOH HOH . 
S 6 HOH B 36 536 32 HOH HOH . 
S 6 HOH B 37 537 227 HOH HOH . 
S 6 HOH B 38 538 254 HOH HOH . 
S 6 HOH B 39 539 112 HOH HOH . 
S 6 HOH B 40 540 150 HOH HOH . 
S 6 HOH B 41 541 77 HOH HOH . 
S 6 HOH B 42 542 129 HOH HOH . 
S 6 HOH B 43 543 52 HOH HOH . 
S 6 HOH B 44 544 259 HOH HOH . 
S 6 HOH B 45 545 97 HOH HOH . 
S 6 HOH B 46 546 127 HOH HOH . 
S 6 HOH B 47 547 215 HOH HOH . 
S 6 HOH B 48 548 111 HOH HOH . 
S 6 HOH B 49 549 148 HOH HOH . 
S 6 HOH B 50 550 158 HOH HOH . 
S 6 HOH B 51 551 174 HOH HOH . 
S 6 HOH B 52 552 198 HOH HOH . 
S 6 HOH B 53 553 74 HOH HOH . 
S 6 HOH B 54 554 137 HOH HOH . 
S 6 HOH B 55 555 70 HOH HOH . 
S 6 HOH B 56 556 78 HOH HOH . 
S 6 HOH B 57 557 105 HOH HOH . 
S 6 HOH B 58 558 216 HOH HOH . 
S 6 HOH B 59 559 131 HOH HOH . 
S 6 HOH B 60 560 155 HOH HOH . 
S 6 HOH B 61 561 126 HOH HOH . 
S 6 HOH B 62 562 255 HOH HOH . 
S 6 HOH B 63 563 110 HOH HOH . 
S 6 HOH B 64 564 219 HOH HOH . 
S 6 HOH B 65 565 207 HOH HOH . 
S 6 HOH B 66 566 156 HOH HOH . 
S 6 HOH B 67 567 81 HOH HOH . 
S 6 HOH B 68 568 103 HOH HOH . 
S 6 HOH B 69 569 107 HOH HOH . 
S 6 HOH B 70 570 199 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 4 -19.481 -0.948 36.915 1 67.72 ? C1 EDO 405 A 1 
HETATM 2 O O1 EDO . . . I 4 -18.575 -2.035 37.136 1 75.16 ? O1 EDO 405 A 1 
HETATM 3 C C2 EDO . . . I 4 -20.891 -1.508 36.816 1 57.96 ? C2 EDO 405 A 1 
HETATM 4 O O2 EDO . . . I 4 -20.882 -2.557 35.844 1 61.04 ? O2 EDO 405 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#