data_8R42 # _model_server_result.job_id yyVeXXyDqmElS4l7kXGFVg _model_server_result.datetime_utc '2024-11-22 09:08:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":401}' # _entry.id 8R42 # _exptl.entry_id 8R42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-[(2~{R})-2-[(4-chlorophenyl)methyl]pyrrolidin-1-yl]piperidin-1-yl]pyridine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R42 _cell.length_a 109.48 _cell.length_b 121.89 _cell.length_c 136.69 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 X 1 NAG X 1 NAG 2 n C NAG 2 X 2 NAG X 2 NAG 2 n D NAG 1 Y 1 NAG Y 1 NAG 2 n D NAG 2 Y 2 NAG Y 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 300 A CYS 300 1_555 A SG CYS 364 A CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 26 B CYS 26 1_555 B SG CYS 51 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 300 B CYS 300 1_555 B SG CYS 364 B CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 60 A ASN 60 1_555 C C1 NAG . X NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B ND2 ASN 60 B ASN 60 1_555 D C1 NAG . Y NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 C O4 NAG . X NAG 1 1_555 C C1 NAG . X NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 D O4 NAG . Y NAG 1 1_555 D C1 NAG . Y NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C21 H26 Cl N3' _chem_comp.formula_weight 355.904 _chem_comp.id XUC _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[(2~{R})-2-[(4-chlorophenyl)methyl]pyrrolidin-1-yl]piperidin-1-yl]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL01 C02 XUC sing 419 n n C07 C02 XUC doub 420 n y C07 C06 XUC sing 421 n y C22 C21 XUC doub 422 n y C22 C23 XUC sing 423 n y C21 C20 XUC sing 424 n y C02 C03 XUC sing 425 n y C06 C05 XUC doub 426 n y C23 C24 XUC doub 427 n y C16 C15 XUC sing 428 n n C16 N17 XUC sing 429 n n C15 C14 XUC sing 430 n n C20 N17 XUC sing 431 n n C20 N25 XUC doub 432 n y N17 C18 XUC sing 433 n n C05 C04 XUC sing 434 n y C05 C08 XUC sing 435 n n C24 N25 XUC sing 436 n y C03 C04 XUC doub 437 n y C14 N13 XUC sing 438 n n C14 C19 XUC sing 439 n n C09 C10 XUC sing 440 n n C09 C08 XUC sing 441 n n C09 N13 XUC sing 442 n n C10 C11 XUC sing 443 n n N13 C12 XUC sing 444 n n C18 C19 XUC sing 445 n n C12 C11 XUC sing 446 n n C18 H1 XUC sing 447 n n C18 H2 XUC sing 448 n n C16 H3 XUC sing 449 n n C16 H4 XUC sing 450 n n C15 H5 XUC sing 451 n n C15 H6 XUC sing 452 n n C14 H7 XUC sing 453 n n C12 H8 XUC sing 454 n n C12 H9 XUC sing 455 n n C11 H10 XUC sing 456 n n C11 H11 XUC sing 457 n n C10 H12 XUC sing 458 n n C10 H13 XUC sing 459 n n C03 H14 XUC sing 460 n n C04 H15 XUC sing 461 n n C06 H16 XUC sing 462 n n C07 H17 XUC sing 463 n n C08 H18 XUC sing 464 n n C08 H19 XUC sing 465 n n C09 H20 XUC sing 466 n n C19 H21 XUC sing 467 n n C19 H22 XUC sing 468 n n C21 H23 XUC sing 469 n n C22 H24 XUC sing 470 n n C23 H25 XUC sing 471 n n C24 H26 XUC sing 472 n n # _atom_sites.entry_id 8R42 _atom_sites.fract_transf_matrix[1][1] 0.009134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 XUC A 1 401 1 XUC 179 . F 4 EDO A 1 402 2 EDO EDO . G 4 EDO A 1 403 4 EDO EDO . H 4 EDO A 1 404 6 EDO EDO . I 4 EDO A 1 405 7 EDO EDO . J 4 EDO A 1 406 8 EDO EDO . K 4 EDO A 1 407 9 EDO EDO . L 4 EDO A 1 408 10 EDO EDO . M 4 EDO A 1 409 14 EDO EDO . N 4 EDO A 1 410 15 EDO EDO . O 5 SO4 A 1 411 1 SO4 SO4 . P 6 CL A 1 412 1 CL CL . Q 3 XUC B 1 401 2 XUC 179 . R 4 EDO B 1 402 3 EDO EDO . S 7 HOH A 1 501 227 HOH HOH . S 7 HOH A 2 502 152 HOH HOH . S 7 HOH A 3 503 229 HOH HOH . S 7 HOH A 4 504 21 HOH HOH . S 7 HOH A 5 505 221 HOH HOH . S 7 HOH A 6 506 64 HOH HOH . S 7 HOH A 7 507 100 HOH HOH . S 7 HOH A 8 508 4 HOH HOH . S 7 HOH A 9 509 15 HOH HOH . S 7 HOH A 10 510 29 HOH HOH . S 7 HOH A 11 511 5 HOH HOH . S 7 HOH A 12 512 126 HOH HOH . S 7 HOH A 13 513 231 HOH HOH . S 7 HOH A 14 514 220 HOH HOH . S 7 HOH A 15 515 88 HOH HOH . S 7 HOH A 16 516 114 HOH HOH . S 7 HOH A 17 517 17 HOH HOH . S 7 HOH A 18 518 97 HOH HOH . S 7 HOH A 19 519 67 HOH HOH . S 7 HOH A 20 520 209 HOH HOH . S 7 HOH A 21 521 131 HOH HOH . S 7 HOH A 22 522 6 HOH HOH . S 7 HOH A 23 523 9 HOH HOH . S 7 HOH A 24 524 228 HOH HOH . S 7 HOH A 25 525 53 HOH HOH . S 7 HOH A 26 526 117 HOH HOH . S 7 HOH A 27 527 19 HOH HOH . S 7 HOH A 28 528 3 HOH HOH . S 7 HOH A 29 529 230 HOH HOH . S 7 HOH A 30 530 28 HOH HOH . S 7 HOH A 31 531 121 HOH HOH . S 7 HOH A 32 532 77 HOH HOH . S 7 HOH A 33 533 106 HOH HOH . S 7 HOH A 34 534 75 HOH HOH . S 7 HOH A 35 535 31 HOH HOH . S 7 HOH A 36 536 42 HOH HOH . S 7 HOH A 37 537 36 HOH HOH . S 7 HOH A 38 538 39 HOH HOH . S 7 HOH A 39 539 218 HOH HOH . S 7 HOH A 40 540 86 HOH HOH . S 7 HOH A 41 541 183 HOH HOH . S 7 HOH A 42 542 10 HOH HOH . S 7 HOH A 43 543 22 HOH HOH . S 7 HOH A 44 544 71 HOH HOH . S 7 HOH A 45 545 60 HOH HOH . S 7 HOH A 46 546 225 HOH HOH . S 7 HOH A 47 547 94 HOH HOH . S 7 HOH A 48 548 33 HOH HOH . S 7 HOH A 49 549 178 HOH HOH . S 7 HOH A 50 550 176 HOH HOH . S 7 HOH A 51 551 68 HOH HOH . S 7 HOH A 52 552 65 HOH HOH . S 7 HOH A 53 553 158 HOH HOH . S 7 HOH A 54 554 74 HOH HOH . S 7 HOH A 55 555 118 HOH HOH . S 7 HOH A 56 556 164 HOH HOH . S 7 HOH A 57 557 232 HOH HOH . S 7 HOH A 58 558 73 HOH HOH . S 7 HOH A 59 559 98 HOH HOH . S 7 HOH A 60 560 177 HOH HOH . S 7 HOH A 61 561 63 HOH HOH . S 7 HOH A 62 562 219 HOH HOH . S 7 HOH A 63 563 85 HOH HOH . S 7 HOH A 64 564 110 HOH HOH . T 7 HOH B 1 501 217 HOH HOH . T 7 HOH B 2 502 215 HOH HOH . T 7 HOH B 3 503 202 HOH HOH . T 7 HOH B 4 504 226 HOH HOH . T 7 HOH B 5 505 96 HOH HOH . T 7 HOH B 6 506 2 HOH HOH . T 7 HOH B 7 507 12 HOH HOH . T 7 HOH B 8 508 223 HOH HOH . T 7 HOH B 9 509 83 HOH HOH . T 7 HOH B 10 510 18 HOH HOH . T 7 HOH B 11 511 200 HOH HOH . T 7 HOH B 12 512 7 HOH HOH . T 7 HOH B 13 513 1 HOH HOH . T 7 HOH B 14 514 11 HOH HOH . T 7 HOH B 15 515 34 HOH HOH . T 7 HOH B 16 516 45 HOH HOH . T 7 HOH B 17 517 139 HOH HOH . T 7 HOH B 18 518 211 HOH HOH . T 7 HOH B 19 519 224 HOH HOH . T 7 HOH B 20 520 81 HOH HOH . T 7 HOH B 21 521 13 HOH HOH . T 7 HOH B 22 522 16 HOH HOH . T 7 HOH B 23 523 82 HOH HOH . T 7 HOH B 24 524 168 HOH HOH . T 7 HOH B 25 525 199 HOH HOH . T 7 HOH B 26 526 180 HOH HOH . T 7 HOH B 27 527 55 HOH HOH . T 7 HOH B 28 528 58 HOH HOH . T 7 HOH B 29 529 61 HOH HOH . T 7 HOH B 30 530 154 HOH HOH . T 7 HOH B 31 531 90 HOH HOH . T 7 HOH B 32 532 93 HOH HOH . T 7 HOH B 33 533 179 HOH HOH . T 7 HOH B 34 534 191 HOH HOH . T 7 HOH B 35 535 62 HOH HOH . T 7 HOH B 36 536 192 HOH HOH . T 7 HOH B 37 537 92 HOH HOH . T 7 HOH B 38 538 80 HOH HOH . T 7 HOH B 39 539 196 HOH HOH . T 7 HOH B 40 540 163 HOH HOH . T 7 HOH B 41 541 79 HOH HOH . T 7 HOH B 42 542 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 XUC . . . Q 3 -54.2 -7.532 60.354 1 72.78 ? C18 XUC 401 B 1 HETATM 2 C C16 XUC . . . Q 3 -53.896 -5.242 61.198 1 72.2 ? C16 XUC 401 B 1 HETATM 3 C C15 XUC . . . Q 3 -52.819 -5.647 62.206 1 79.76 ? C15 XUC 401 B 1 HETATM 4 C C14 XUC . . . Q 3 -51.857 -6.647 61.494 1 75.83 ? C14 XUC 401 B 1 HETATM 5 C C12 XUC . . . Q 3 -50.395 -8.324 61.871 1 69.99 ? C12 XUC 401 B 1 HETATM 6 C C11 XUC . . . Q 3 -49.026 -8.255 62.591 1 69.25 ? C11 XUC 401 B 1 HETATM 7 C C10 XUC . . . Q 3 -48.952 -6.882 62.986 1 64.98 ? C10 XUC 401 B 1 HETATM 8 C C02 XUC . . . Q 3 -48.803 -4.835 67.877 1 65.12 ? C02 XUC 401 B 1 HETATM 9 C C03 XUC . . . Q 3 -48.889 -6.343 67.898 1 68.59 ? C03 XUC 401 B 1 HETATM 10 C C04 XUC . . . Q 3 -49.511 -6.991 66.88 1 73.4 ? C04 XUC 401 B 1 HETATM 11 C C05 XUC . . . Q 3 -50.112 -6.203 65.741 1 68.81 ? C05 XUC 401 B 1 HETATM 12 C C06 XUC . . . Q 3 -50.045 -4.854 65.717 1 69.01 ? C06 XUC 401 B 1 HETATM 13 C C07 XUC . . . Q 3 -49.34 -4.131 66.859 1 71.83 ? C07 XUC 401 B 1 HETATM 14 C C08 XUC . . . Q 3 -50.823 -6.98 64.624 1 79.25 ? C08 XUC 401 B 1 HETATM 15 C C09 XUC . . . Q 3 -50.381 -6.534 63.178 1 71.49 ? C09 XUC 401 B 1 HETATM 16 C C19 XUC . . . Q 3 -52.682 -7.638 60.601 1 73.71 ? C19 XUC 401 B 1 HETATM 17 C C20 XUC . . . Q 3 -55.994 -5.874 60.113 1 71.5 ? C20 XUC 401 B 1 HETATM 18 C C21 XUC . . . Q 3 -56.507 -4.517 59.974 1 66.72 ? C21 XUC 401 B 1 HETATM 19 C C22 XUC . . . Q 3 -57.761 -4.252 59.717 1 75.05 ? C22 XUC 401 B 1 HETATM 20 C C23 XUC . . . Q 3 -58.609 -5.121 59.586 1 76.06 ? C23 XUC 401 B 1 HETATM 21 C C24 XUC . . . Q 3 -58.359 -6.396 59.678 1 72.32 ? C24 XUC 401 B 1 HETATM 22 N N13 XUC . . . Q 3 -51.129 -7.311 62.373 1 80.91 ? N13 XUC 401 B 1 HETATM 23 N N17 XUC . . . Q 3 -54.626 -6.176 60.399 1 71.73 ? N17 XUC 401 B 1 HETATM 24 N N25 XUC . . . Q 3 -57.079 -6.918 59.95 1 76.92 ? N25 XUC 401 B 1 HETATM 25 CL CL01 XUC . . . Q 3 -47.99 -4.01 69.178 0.5 52.06 ? CL01 XUC 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #