data_8R49
#
_model_server_result.job_id            sl5oQ_vNUbWySmDXLXUoXw 
_model_server_result.datetime_utc      '2024-11-28 01:11:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r49 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1001}' 
#
_entry.id    8R49 
#
_exptl.entry_id    8R49 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.47 
_cell.angle_gamma         90 
_cell.entry_id            8R49 
_cell.length_a            218.63 
_cell.length_b            136.728 
_cell.length_c            123.155 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R49 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,I,O 1 1,2 
B,C,E,F,J,K,L,M,N,P,Q 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 1 7 GLC GLC C1 O1 . O4 HO4 . sing 
2 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 
3 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 
4 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing 
5 ? 2 5 4 GLC GLC C1 O1 . O4 HO4 . sing 
6 ? 2 6 5 GLC GLC C1 O1 . O4 HO4 . sing 
7 ? 2 7 6 GLC GLC C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n D GLC 1 D 7 GLC A 1001 GLC 
2 n D GLC 2 D 1 GLC A 1007 GLC 
2 n D GLC 3 D 2 GLC A 1006 GLC 
2 n D GLC 4 D 3 GLC A 1005 GLC 
2 n D GLC 5 D 4 GLC A 1004 GLC 
2 n D GLC 6 D 5 GLC A 1003 GLC 
2 n D GLC 7 D 6 GLC A 1002 GLC 
2 n E GLC 1 E 7 GLC B 1001 GLC 
2 n E GLC 2 E 1 GLC B 1007 GLC 
2 n E GLC 3 E 2 GLC B 1006 GLC 
2 n E GLC 4 E 3 GLC B 1005 GLC 
2 n E GLC 5 E 4 GLC B 1004 GLC 
2 n E GLC 6 E 5 GLC B 1003 GLC 
2 n E GLC 7 E 6 GLC B 1002 GLC 
2 n F GLC 1 F 7 GLC C 1001 GLC 
2 n F GLC 2 F 1 GLC C 1007 GLC 
2 n F GLC 3 F 2 GLC C 1006 GLC 
2 n F GLC 4 F 3 GLC C 1005 GLC 
2 n F GLC 5 F 4 GLC C 1004 GLC 
2 n F GLC 6 F 5 GLC C 1003 GLC 
2 n F GLC 7 F 6 GLC C 1002 GLC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 761 A MET 761 1_555 A N LLP 762 A LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? 
covale ? covale2 A C LLP 762 A LLP 762 1_555 A N PHE 763 A PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale3 B C MET 761 B MET 761 1_555 B N LLP 762 B LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale4 B C LLP 762 B LLP 762 1_555 B N PHE 763 B PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? 
covale ? covale5 C C MET 761 C MET 761 1_555 C N LLP 762 C LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? 
covale ? covale6 C C LLP 762 C LLP 762 1_555 C N PHE 763 C PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale7 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale8 D C1 GLC . D GLC 1 1_555 D O4 GLC . D GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? 
covale ? covale9 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? 
covale ? covale10 D O4 GLC . D GLC 3 1_555 D C1 GLC . D GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? 
covale ? covale11 D O4 GLC . D GLC 4 1_555 D C1 GLC . D GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale12 D O4 GLC . D GLC 5 1_555 D C1 GLC . D GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale13 D O4 GLC . D GLC 6 1_555 D C1 GLC . D GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale14 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale15 E C1 GLC . E GLC 1 1_555 E O4 GLC . E GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale16 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale17 E O4 GLC . E GLC 3 1_555 E C1 GLC . E GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale18 E O4 GLC . E GLC 4 1_555 E C1 GLC . E GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale19 E O4 GLC . E GLC 5 1_555 E C1 GLC . E GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale20 E O4 GLC . E GLC 6 1_555 E C1 GLC . E GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale21 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale22 F C1 GLC . F GLC 1 1_555 F O4 GLC . F GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
covale ? covale23 F O4 GLC . F GLC 2 1_555 F C1 GLC . F GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? 
covale ? covale24 F O4 GLC . F GLC 3 1_555 F C1 GLC . F GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale25 F O4 GLC . F GLC 4 1_555 F C1 GLC . F GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale26 F O4 GLC . F GLC 5 1_555 F C1 GLC . F GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale27 F O4 GLC . F GLC 6 1_555 F C1 GLC . F GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8R49 
_atom_sites.fract_transf_matrix[1][1]    0.004574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000117 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008123 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 DMS A 1 1001 5 DMS DMS . 
H 3 DMS A 1 1002 6 DMS DMS . 
I 3 DMS A 1 1003 8 DMS DMS . 
J 3 DMS B 1 1001 1 DMS DMS . 
K 3 DMS B 1 1002 2 DMS DMS . 
L 3 DMS B 1 1003 3 DMS DMS . 
M 3 DMS B 1 1004 4 DMS DMS . 
N 3 DMS C 1 1001 7 DMS DMS . 
O 4 HOH A 1 1101 3 HOH HOH . 
O 4 HOH A 2 1102 30 HOH HOH . 
O 4 HOH A 3 1103 97 HOH HOH . 
O 4 HOH A 4 1104 62 HOH HOH . 
O 4 HOH A 5 1105 60 HOH HOH . 
O 4 HOH A 6 1106 22 HOH HOH . 
O 4 HOH A 7 1107 66 HOH HOH . 
O 4 HOH A 8 1108 70 HOH HOH . 
O 4 HOH A 9 1109 20 HOH HOH . 
O 4 HOH A 10 1110 31 HOH HOH . 
O 4 HOH A 11 1111 72 HOH HOH . 
O 4 HOH A 12 1112 5 HOH HOH . 
O 4 HOH A 13 1113 24 HOH HOH . 
O 4 HOH A 14 1114 8 HOH HOH . 
O 4 HOH A 15 1115 73 HOH HOH . 
O 4 HOH A 16 1116 17 HOH HOH . 
O 4 HOH A 17 1117 6 HOH HOH . 
O 4 HOH A 18 1118 9 HOH HOH . 
O 4 HOH A 19 1119 64 HOH HOH . 
O 4 HOH A 20 1120 19 HOH HOH . 
O 4 HOH A 21 1121 4 HOH HOH . 
O 4 HOH A 22 1122 2 HOH HOH . 
O 4 HOH A 23 1123 26 HOH HOH . 
O 4 HOH A 24 1124 65 HOH HOH . 
O 4 HOH A 25 1125 63 HOH HOH . 
O 4 HOH A 26 1126 29 HOH HOH . 
O 4 HOH A 27 1127 18 HOH HOH . 
O 4 HOH A 28 1128 23 HOH HOH . 
O 4 HOH A 29 1129 14 HOH HOH . 
O 4 HOH A 30 1130 16 HOH HOH . 
O 4 HOH A 31 1131 76 HOH HOH . 
O 4 HOH A 32 1132 12 HOH HOH . 
O 4 HOH A 33 1133 69 HOH HOH . 
O 4 HOH A 34 1134 7 HOH HOH . 
O 4 HOH A 35 1135 10 HOH HOH . 
O 4 HOH A 36 1136 32 HOH HOH . 
O 4 HOH A 37 1137 61 HOH HOH . 
O 4 HOH A 38 1138 75 HOH HOH . 
O 4 HOH A 39 1139 74 HOH HOH . 
O 4 HOH A 40 1140 25 HOH HOH . 
O 4 HOH A 41 1141 68 HOH HOH . 
O 4 HOH A 42 1142 21 HOH HOH . 
O 4 HOH A 43 1143 13 HOH HOH . 
O 4 HOH A 44 1144 98 HOH HOH . 
O 4 HOH A 45 1145 27 HOH HOH . 
O 4 HOH A 46 1146 15 HOH HOH . 
O 4 HOH A 47 1147 28 HOH HOH . 
O 4 HOH A 48 1148 99 HOH HOH . 
P 4 HOH B 1 1101 46 HOH HOH . 
P 4 HOH B 2 1102 85 HOH HOH . 
P 4 HOH B 3 1103 41 HOH HOH . 
P 4 HOH B 4 1104 11 HOH HOH . 
P 4 HOH B 5 1105 1 HOH HOH . 
P 4 HOH B 6 1106 80 HOH HOH . 
P 4 HOH B 7 1107 37 HOH HOH . 
P 4 HOH B 8 1108 90 HOH HOH . 
P 4 HOH B 9 1109 71 HOH HOH . 
P 4 HOH B 10 1110 89 HOH HOH . 
P 4 HOH B 11 1111 84 HOH HOH . 
P 4 HOH B 12 1112 53 HOH HOH . 
P 4 HOH B 13 1113 50 HOH HOH . 
P 4 HOH B 14 1114 88 HOH HOH . 
P 4 HOH B 15 1115 49 HOH HOH . 
P 4 HOH B 16 1116 38 HOH HOH . 
P 4 HOH B 17 1117 44 HOH HOH . 
P 4 HOH B 18 1118 35 HOH HOH . 
P 4 HOH B 19 1119 77 HOH HOH . 
P 4 HOH B 20 1120 39 HOH HOH . 
P 4 HOH B 21 1121 42 HOH HOH . 
P 4 HOH B 22 1122 43 HOH HOH . 
P 4 HOH B 23 1123 47 HOH HOH . 
P 4 HOH B 24 1124 34 HOH HOH . 
P 4 HOH B 25 1125 87 HOH HOH . 
P 4 HOH B 26 1126 40 HOH HOH . 
P 4 HOH B 27 1127 45 HOH HOH . 
P 4 HOH B 28 1128 86 HOH HOH . 
P 4 HOH B 29 1129 100 HOH HOH . 
P 4 HOH B 30 1130 101 HOH HOH . 
P 4 HOH B 31 1131 48 HOH HOH . 
P 4 HOH B 32 1132 79 HOH HOH . 
P 4 HOH B 33 1133 33 HOH HOH . 
Q 4 HOH C 1 1101 93 HOH HOH . 
Q 4 HOH C 2 1102 92 HOH HOH . 
Q 4 HOH C 3 1103 83 HOH HOH . 
Q 4 HOH C 4 1104 95 HOH HOH . 
Q 4 HOH C 5 1105 82 HOH HOH . 
Q 4 HOH C 6 1106 67 HOH HOH . 
Q 4 HOH C 7 1107 54 HOH HOH . 
Q 4 HOH C 8 1108 55 HOH HOH . 
Q 4 HOH C 9 1109 57 HOH HOH . 
Q 4 HOH C 10 1110 59 HOH HOH . 
Q 4 HOH C 11 1111 52 HOH HOH . 
Q 4 HOH C 12 1112 81 HOH HOH . 
Q 4 HOH C 13 1113 58 HOH HOH . 
Q 4 HOH C 14 1114 94 HOH HOH . 
Q 4 HOH C 15 1115 56 HOH HOH . 
Q 4 HOH C 16 1116 96 HOH HOH . 
Q 4 HOH C 17 1117 78 HOH HOH . 
Q 4 HOH C 18 1118 36 HOH HOH . 
Q 4 HOH C 19 1119 91 HOH HOH . 
Q 4 HOH C 20 1120 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . N 3 -66.296 -110.609 -49.35 1 109.48 0 S DMS 1001 C 1 
HETATM 2 O O DMS . . . N 3 -65.147 -111.446 -49.869 1 97.32 0 O DMS 1001 C 1 
HETATM 3 C C1 DMS . . . N 3 -65.727 -108.924 -49.299 1 107.06 0 C1 DMS 1001 C 1 
HETATM 4 C C2 DMS . . . N 3 -66.402 -110.9 -47.601 1 106.3 0 C2 DMS 1001 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#