data_8R4G
#
_model_server_result.job_id            McFF2O4wx4AJQtt4eFP1WA 
_model_server_result.datetime_utc      '2024-11-23 03:32:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r4g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1004}' 
#
_entry.id    8R4G 
#
_exptl.entry_id    8R4G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.05 
_cell.angle_gamma         90 
_cell.entry_id            8R4G 
_cell.length_a            218.233 
_cell.length_b            125.913 
_cell.length_c            117.075 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R4G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,P,Q 1 1 
C,K,L,M,N,O,R 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0.102167 0 -117.074955 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 761 A MET 761 1_555 A N LLP 762 A LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C LLP 762 A LLP 762 1_555 A N PHE 763 A PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale3 B C MET 761 B MET 761 1_555 B N LLP 762 B LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B C LLP 762 B LLP 762 1_555 B N PHE 763 B PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 C C MET 761 C MET 761 1_555 C N LLP 762 C LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 C C LLP 762 C LLP 762 1_555 C N PHE 763 C PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     8R4G 
_atom_sites.fract_transf_matrix[1][1]    0.004582 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000004 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007942 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008542 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GLC A 1 1001 1 GLC GLC . 
E 3 GOL A 1 1002 2 GOL GOL . 
F 3 GOL A 1 1003 4 GOL GOL . 
G 3 GOL A 1 1004 14 GOL GOL . 
H 2 GLC B 1 1001 2 GLC GLC . 
I 3 GOL B 1 1002 3 GOL GOL . 
J 3 GOL B 1 1003 9 GOL GOL . 
K 2 GLC C 1 1001 3 GLC GLC . 
L 3 GOL C 1 1002 5 GOL GOL . 
M 3 GOL C 1 1003 6 GOL GOL . 
N 3 GOL C 1 1004 7 GOL GOL . 
O 3 GOL C 1 1005 13 GOL GOL . 
P 4 HOH A 1 1101 38 HOH HOH . 
P 4 HOH A 2 1102 54 HOH HOH . 
P 4 HOH A 3 1103 44 HOH HOH . 
P 4 HOH A 4 1104 50 HOH HOH . 
P 4 HOH A 5 1105 22 HOH HOH . 
P 4 HOH A 6 1106 52 HOH HOH . 
P 4 HOH A 7 1107 8 HOH HOH . 
P 4 HOH A 8 1108 33 HOH HOH . 
P 4 HOH A 9 1109 5 HOH HOH . 
P 4 HOH A 10 1110 23 HOH HOH . 
P 4 HOH A 11 1111 16 HOH HOH . 
P 4 HOH A 12 1112 56 HOH HOH . 
P 4 HOH A 13 1113 17 HOH HOH . 
P 4 HOH A 14 1114 26 HOH HOH . 
P 4 HOH A 15 1115 51 HOH HOH . 
P 4 HOH A 16 1116 123 HOH HOH . 
P 4 HOH A 17 1117 18 HOH HOH . 
P 4 HOH A 18 1118 55 HOH HOH . 
P 4 HOH A 19 1119 1 HOH HOH . 
P 4 HOH A 20 1120 35 HOH HOH . 
P 4 HOH A 21 1121 12 HOH HOH . 
P 4 HOH A 22 1122 7 HOH HOH . 
P 4 HOH A 23 1123 20 HOH HOH . 
P 4 HOH A 24 1124 24 HOH HOH . 
P 4 HOH A 25 1125 32 HOH HOH . 
P 4 HOH A 26 1126 9 HOH HOH . 
P 4 HOH A 27 1127 40 HOH HOH . 
P 4 HOH A 28 1128 29 HOH HOH . 
P 4 HOH A 29 1129 107 HOH HOH . 
P 4 HOH A 30 1130 25 HOH HOH . 
P 4 HOH A 31 1131 45 HOH HOH . 
P 4 HOH A 32 1132 47 HOH HOH . 
P 4 HOH A 33 1133 46 HOH HOH . 
P 4 HOH A 34 1134 130 HOH HOH . 
P 4 HOH A 35 1135 124 HOH HOH . 
P 4 HOH A 36 1136 31 HOH HOH . 
P 4 HOH A 37 1137 37 HOH HOH . 
P 4 HOH A 38 1138 48 HOH HOH . 
P 4 HOH A 39 1139 30 HOH HOH . 
P 4 HOH A 40 1140 11 HOH HOH . 
P 4 HOH A 41 1141 41 HOH HOH . 
P 4 HOH A 42 1142 53 HOH HOH . 
P 4 HOH A 43 1143 122 HOH HOH . 
P 4 HOH A 44 1144 21 HOH HOH . 
P 4 HOH A 45 1145 15 HOH HOH . 
P 4 HOH A 46 1146 10 HOH HOH . 
P 4 HOH A 47 1147 28 HOH HOH . 
P 4 HOH A 48 1148 34 HOH HOH . 
P 4 HOH A 49 1149 42 HOH HOH . 
P 4 HOH A 50 1150 6 HOH HOH . 
P 4 HOH A 51 1151 27 HOH HOH . 
P 4 HOH A 52 1152 36 HOH HOH . 
P 4 HOH A 53 1153 114 HOH HOH . 
Q 4 HOH B 1 1101 112 HOH HOH . 
Q 4 HOH B 2 1102 63 HOH HOH . 
Q 4 HOH B 3 1103 58 HOH HOH . 
Q 4 HOH B 4 1104 80 HOH HOH . 
Q 4 HOH B 5 1105 60 HOH HOH . 
Q 4 HOH B 6 1106 19 HOH HOH . 
Q 4 HOH B 7 1107 65 HOH HOH . 
Q 4 HOH B 8 1108 59 HOH HOH . 
Q 4 HOH B 9 1109 4 HOH HOH . 
Q 4 HOH B 10 1110 61 HOH HOH . 
Q 4 HOH B 11 1111 71 HOH HOH . 
Q 4 HOH B 12 1112 13 HOH HOH . 
Q 4 HOH B 13 1113 72 HOH HOH . 
Q 4 HOH B 14 1114 120 HOH HOH . 
Q 4 HOH B 15 1115 75 HOH HOH . 
Q 4 HOH B 16 1116 79 HOH HOH . 
Q 4 HOH B 17 1117 106 HOH HOH . 
Q 4 HOH B 18 1118 119 HOH HOH . 
Q 4 HOH B 19 1119 77 HOH HOH . 
Q 4 HOH B 20 1120 68 HOH HOH . 
Q 4 HOH B 21 1121 39 HOH HOH . 
Q 4 HOH B 22 1122 73 HOH HOH . 
Q 4 HOH B 23 1123 62 HOH HOH . 
Q 4 HOH B 24 1124 67 HOH HOH . 
Q 4 HOH B 25 1125 126 HOH HOH . 
Q 4 HOH B 26 1126 108 HOH HOH . 
Q 4 HOH B 27 1127 49 HOH HOH . 
Q 4 HOH B 28 1128 70 HOH HOH . 
Q 4 HOH B 29 1129 74 HOH HOH . 
Q 4 HOH B 30 1130 109 HOH HOH . 
Q 4 HOH B 31 1131 78 HOH HOH . 
Q 4 HOH B 32 1132 64 HOH HOH . 
Q 4 HOH B 33 1133 110 HOH HOH . 
Q 4 HOH B 34 1134 113 HOH HOH . 
Q 4 HOH B 35 1135 76 HOH HOH . 
Q 4 HOH B 36 1136 125 HOH HOH . 
R 4 HOH C 1 1101 89 HOH HOH . 
R 4 HOH C 2 1102 102 HOH HOH . 
R 4 HOH C 3 1103 94 HOH HOH . 
R 4 HOH C 4 1104 84 HOH HOH . 
R 4 HOH C 5 1105 99 HOH HOH . 
R 4 HOH C 6 1106 101 HOH HOH . 
R 4 HOH C 7 1107 117 HOH HOH . 
R 4 HOH C 8 1108 100 HOH HOH . 
R 4 HOH C 9 1109 91 HOH HOH . 
R 4 HOH C 10 1110 98 HOH HOH . 
R 4 HOH C 11 1111 85 HOH HOH . 
R 4 HOH C 12 1112 115 HOH HOH . 
R 4 HOH C 13 1113 57 HOH HOH . 
R 4 HOH C 14 1114 121 HOH HOH . 
R 4 HOH C 15 1115 88 HOH HOH . 
R 4 HOH C 16 1116 95 HOH HOH . 
R 4 HOH C 17 1117 127 HOH HOH . 
R 4 HOH C 18 1118 81 HOH HOH . 
R 4 HOH C 19 1119 96 HOH HOH . 
R 4 HOH C 20 1120 86 HOH HOH . 
R 4 HOH C 21 1121 2 HOH HOH . 
R 4 HOH C 22 1122 103 HOH HOH . 
R 4 HOH C 23 1123 43 HOH HOH . 
R 4 HOH C 24 1124 66 HOH HOH . 
R 4 HOH C 25 1125 118 HOH HOH . 
R 4 HOH C 26 1126 129 HOH HOH . 
R 4 HOH C 27 1127 87 HOH HOH . 
R 4 HOH C 28 1128 90 HOH HOH . 
R 4 HOH C 29 1129 82 HOH HOH . 
R 4 HOH C 30 1130 92 HOH HOH . 
R 4 HOH C 31 1131 93 HOH HOH . 
R 4 HOH C 32 1132 69 HOH HOH . 
R 4 HOH C 33 1133 104 HOH HOH . 
R 4 HOH C 34 1134 83 HOH HOH . 
R 4 HOH C 35 1135 128 HOH HOH . 
R 4 HOH C 36 1136 14 HOH HOH . 
R 4 HOH C 37 1137 3 HOH HOH . 
R 4 HOH C 38 1138 97 HOH HOH . 
R 4 HOH C 39 1139 111 HOH HOH . 
R 4 HOH C 40 1140 105 HOH HOH . 
R 4 HOH C 41 1141 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 3 -28.332 52.859 -35.764 1 50.79 ? C1 GOL 1004 C 1 
HETATM 2 O O1 GOL . . . N 3 -29.495 52.875 -36.578 1 50.79 ? O1 GOL 1004 C 1 
HETATM 3 C C2 GOL . . . N 3 -27.49 51.663 -36.109 1 50.79 ? C2 GOL 1004 C 1 
HETATM 4 O O2 GOL . . . N 3 -26.915 51.881 -37.391 1 50.79 ? O2 GOL 1004 C 1 
HETATM 5 C C3 GOL . . . N 3 -26.415 51.4 -35.086 1 50.79 ? C3 GOL 1004 C 1 
HETATM 6 O O3 GOL . . . N 3 -25.719 52.592 -34.753 1 50.79 ? O3 GOL 1004 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#