data_8R4J # _model_server_result.job_id ib-1Lj5zc8vDjKPF7eF-Cg _model_server_result.datetime_utc '2024-10-16 16:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1002}' # _entry.id 8R4J # _exptl.entry_id 8R4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.191 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAFFEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.55 _cell.angle_gamma 90 _cell.entry_id 8R4J _cell.length_a 218.828 _cell.length_b 136.093 _cell.length_c 123.193 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1,2 B,C,F,G,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 761 A MET 761 1_555 A N LLP 762 A LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C LLP 762 A LLP 762 1_555 A N PHE 763 A PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 B C MET 761 B MET 761 1_555 B N LLP 762 B LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C LLP 762 B LLP 762 1_555 B N PHE 763 B PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 C C MET 761 C MET 761 1_555 C N LLP 762 C LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 C C LLP 762 C LLP 762 1_555 C N PHE 763 C PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id CFF _chem_comp.mon_nstd_flag . _chem_comp.name CAFFEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CFF sing 70 n y N1 C10 CFF sing 71 n n N1 C6 CFF sing 72 n y C2 N3 CFF sing 73 n y C2 O11 CFF doub 74 n n C10 H101 CFF sing 75 n n C10 H102 CFF sing 76 n n C10 H103 CFF sing 77 n n C6 C5 CFF sing 78 n y C6 O13 CFF doub 79 n n N3 C12 CFF sing 80 n n N3 C4 CFF sing 81 n y C12 H121 CFF sing 82 n n C12 H122 CFF sing 83 n n C12 H123 CFF sing 84 n n C4 C5 CFF doub 85 n y C4 N9 CFF sing 86 n y C5 N7 CFF sing 87 n y N9 C8 CFF doub 88 n y N7 C8 CFF sing 89 n y N7 C14 CFF sing 90 n n C8 H81 CFF sing 91 n n C14 H141 CFF sing 92 n n C14 H142 CFF sing 93 n n C14 H143 CFF sing 94 n n # _atom_sites.entry_id 8R4J _atom_sites.fract_transf_matrix[1][1] 0.00457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 1101 1101 GOL GOL . E 2 GOL A 1 1102 1201 GOL GOL . F 2 GOL C 1 1001 1101 GOL GOL . G 3 CFF C 1 1002 802 CFF CFF . H 4 HOH A 1 1201 2 HOH HOH . H 4 HOH A 2 1202 1 HOH HOH . H 4 HOH A 3 1203 17 HOH HOH . H 4 HOH A 4 1204 5 HOH HOH . H 4 HOH A 5 1205 18 HOH HOH . H 4 HOH A 6 1206 4 HOH HOH . H 4 HOH A 7 1207 3 HOH HOH . I 4 HOH C 1 1101 12 HOH HOH . I 4 HOH C 2 1102 9 HOH HOH . I 4 HOH C 3 1103 14 HOH HOH . I 4 HOH C 4 1104 13 HOH HOH . I 4 HOH C 5 1105 16 HOH HOH . I 4 HOH C 6 1106 6 HOH HOH . I 4 HOH C 7 1107 15 HOH HOH . I 4 HOH C 8 1108 10 HOH HOH . I 4 HOH C 9 1109 11 HOH HOH . I 4 HOH C 10 1110 8 HOH HOH . I 4 HOH C 11 1111 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CFF . . . G 3 -76.979 -97.71 -62.828 1 47.7 ? N1 CFF 1002 C 1 HETATM 2 C C2 CFF . . . G 3 -76.108 -98.468 -63.637 1 47.7 ? C2 CFF 1002 C 1 HETATM 3 C C10 CFF . . . G 3 -77.327 -96.358 -63.304 1 47.7 ? C10 CFF 1002 C 1 HETATM 4 C C6 CFF . . . G 3 -77.546 -98.116 -61.603 1 47.7 ? C6 CFF 1002 C 1 HETATM 5 N N3 CFF . . . G 3 -75.766 -99.738 -63.202 1 47.7 ? N3 CFF 1002 C 1 HETATM 6 O O11 CFF . . . G 3 -75.666 -98.016 -64.687 1 47.7 ? O11 CFF 1002 C 1 HETATM 7 C C12 CFF . . . G 3 -74.856 -100.562 -64.01 1 47.7 ? C12 CFF 1002 C 1 HETATM 8 C C4 CFF . . . G 3 -76.283 -100.211 -62.01 1 47.7 ? C4 CFF 1002 C 1 HETATM 9 C C5 CFF . . . G 3 -77.137 -99.44 -61.236 1 47.7 ? C5 CFF 1002 C 1 HETATM 10 N N9 CFF . . . G 3 -76.046 -101.431 -61.453 1 47.7 ? N9 CFF 1002 C 1 HETATM 11 O O13 CFF . . . G 3 -78.298 -97.364 -60.983 1 47.7 ? O13 CFF 1002 C 1 HETATM 12 N N7 CFF . . . G 3 -77.442 -100.241 -60.135 1 47.7 ? N7 CFF 1002 C 1 HETATM 13 C C8 CFF . . . G 3 -76.766 -101.411 -60.325 1 47.7 ? C8 CFF 1002 C 1 HETATM 14 C C14 CFF . . . G 3 -78.299 -99.882 -59.011 1 47.7 ? C14 CFF 1002 C 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #