data_8R4J # _model_server_result.job_id 7iTFNrZNfQXPqzRpD5f5zg _model_server_result.datetime_utc '2024-11-26 23:13:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1101}' # _entry.id 8R4J # _exptl.entry_id 8R4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.55 _cell.angle_gamma 90 _cell.entry_id 8R4J _cell.length_a 218.828 _cell.length_b 136.093 _cell.length_c 123.193 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1,2 B,C,F,G,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 761 A MET 761 1_555 A N LLP 762 A LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C LLP 762 A LLP 762 1_555 A N PHE 763 A PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 B C MET 761 B MET 761 1_555 B N LLP 762 B LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C LLP 762 B LLP 762 1_555 B N PHE 763 B PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 C C MET 761 C MET 761 1_555 C N LLP 762 C LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 C C LLP 762 C LLP 762 1_555 C N PHE 763 C PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 154 n n C1 C2 GOL sing 155 n n C1 H11 GOL sing 156 n n C1 H12 GOL sing 157 n n O1 HO1 GOL sing 158 n n C2 O2 GOL sing 159 n n C2 C3 GOL sing 160 n n C2 H2 GOL sing 161 n n O2 HO2 GOL sing 162 n n C3 O3 GOL sing 163 n n C3 H31 GOL sing 164 n n C3 H32 GOL sing 165 n n O3 HO3 GOL sing 166 n n # _atom_sites.entry_id 8R4J _atom_sites.fract_transf_matrix[1][1] 0.00457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 1101 1101 GOL GOL . E 2 GOL A 1 1102 1201 GOL GOL . F 2 GOL C 1 1001 1101 GOL GOL . G 3 CFF C 1 1002 802 CFF CFF . H 4 HOH A 1 1201 2 HOH HOH . H 4 HOH A 2 1202 1 HOH HOH . H 4 HOH A 3 1203 17 HOH HOH . H 4 HOH A 4 1204 5 HOH HOH . H 4 HOH A 5 1205 18 HOH HOH . H 4 HOH A 6 1206 4 HOH HOH . H 4 HOH A 7 1207 3 HOH HOH . I 4 HOH C 1 1101 12 HOH HOH . I 4 HOH C 2 1102 9 HOH HOH . I 4 HOH C 3 1103 14 HOH HOH . I 4 HOH C 4 1104 13 HOH HOH . I 4 HOH C 5 1105 16 HOH HOH . I 4 HOH C 6 1106 6 HOH HOH . I 4 HOH C 7 1107 15 HOH HOH . I 4 HOH C 8 1108 10 HOH HOH . I 4 HOH C 9 1109 11 HOH HOH . I 4 HOH C 10 1110 8 HOH HOH . I 4 HOH C 11 1111 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 5.929 -61.55 42.479 1 47.7 ? C1 GOL 1101 A 1 HETATM 2 O O1 GOL . . . D 2 5.292 -60.478 43.16 1 47.7 ? O1 GOL 1101 A 1 HETATM 3 C C2 GOL . . . D 2 5.137 -62.825 42.622 1 47.7 ? C2 GOL 1101 A 1 HETATM 4 O O2 GOL . . . D 2 5.868 -63.894 42.038 1 47.7 ? O2 GOL 1101 A 1 HETATM 5 C C3 GOL . . . D 2 4.821 -63.171 44.057 1 47.7 ? C3 GOL 1101 A 1 HETATM 6 O O3 GOL . . . D 2 4.647 -64.574 44.221 1 47.7 ? O3 GOL 1101 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #