data_8R4K # _model_server_result.job_id BJZ_iScWhDuJi_Wixw5IzQ _model_server_result.datetime_utc '2024-10-24 22:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 8R4K # _exptl.entry_id 8R4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.3 _cell.angle_gamma 90 _cell.entry_id 8R4K _cell.length_a 218.058 _cell.length_b 134.907 _cell.length_c 123.105 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1,3 B,F 2 1 C,G 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 2.792924 0 -123.073314 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 761 A MET 761 1_555 A N LLP 762 A LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C LLP 762 A LLP 762 1_555 A N PHE 763 A PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C MET 761 B MET 761 1_555 B N LLP 762 B LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 B C LLP 762 B LLP 762 1_555 B N PHE 763 B PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 C C MET 761 C MET 761 1_555 C N LLP 762 C LLP 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 C C LLP 762 C LLP 762 1_555 C N PHE 763 C PHE 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8R4K _atom_sites.fract_transf_matrix[1][1] 0.004586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000104 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 1001 1 GOL GOL . E 3 HOH A 1 1101 53 HOH HOH . E 3 HOH A 2 1102 19 HOH HOH . E 3 HOH A 3 1103 14 HOH HOH . E 3 HOH A 4 1104 9 HOH HOH . E 3 HOH A 5 1105 1 HOH HOH . E 3 HOH A 6 1106 23 HOH HOH . E 3 HOH A 7 1107 33 HOH HOH . E 3 HOH A 8 1108 7 HOH HOH . E 3 HOH A 9 1109 62 HOH HOH . E 3 HOH A 10 1110 31 HOH HOH . E 3 HOH A 11 1111 35 HOH HOH . E 3 HOH A 12 1112 32 HOH HOH . E 3 HOH A 13 1113 8 HOH HOH . E 3 HOH A 14 1114 18 HOH HOH . E 3 HOH A 15 1115 64 HOH HOH . E 3 HOH A 16 1116 27 HOH HOH . E 3 HOH A 17 1117 24 HOH HOH . E 3 HOH A 18 1118 29 HOH HOH . E 3 HOH A 19 1119 52 HOH HOH . E 3 HOH A 20 1120 20 HOH HOH . E 3 HOH A 21 1121 28 HOH HOH . E 3 HOH A 22 1122 16 HOH HOH . E 3 HOH A 23 1123 54 HOH HOH . E 3 HOH A 24 1124 4 HOH HOH . E 3 HOH A 25 1125 15 HOH HOH . E 3 HOH A 26 1126 57 HOH HOH . E 3 HOH A 27 1127 21 HOH HOH . E 3 HOH A 28 1128 3 HOH HOH . E 3 HOH A 29 1129 11 HOH HOH . E 3 HOH A 30 1130 26 HOH HOH . E 3 HOH A 31 1131 25 HOH HOH . E 3 HOH A 32 1132 5 HOH HOH . E 3 HOH A 33 1133 43 HOH HOH . E 3 HOH A 34 1134 10 HOH HOH . E 3 HOH A 35 1135 22 HOH HOH . F 3 HOH B 1 1101 38 HOH HOH . F 3 HOH B 2 1102 37 HOH HOH . F 3 HOH B 3 1103 51 HOH HOH . F 3 HOH B 4 1104 17 HOH HOH . F 3 HOH B 5 1105 45 HOH HOH . F 3 HOH B 6 1106 58 HOH HOH . F 3 HOH B 7 1107 39 HOH HOH . F 3 HOH B 8 1108 6 HOH HOH . F 3 HOH B 9 1109 40 HOH HOH . F 3 HOH B 10 1110 34 HOH HOH . F 3 HOH B 11 1111 41 HOH HOH . F 3 HOH B 12 1112 36 HOH HOH . F 3 HOH B 13 1113 44 HOH HOH . F 3 HOH B 14 1114 63 HOH HOH . F 3 HOH B 15 1115 42 HOH HOH . F 3 HOH B 16 1116 60 HOH HOH . F 3 HOH B 17 1117 12 HOH HOH . F 3 HOH B 18 1118 46 HOH HOH . F 3 HOH B 19 1119 59 HOH HOH . G 3 HOH C 1 1101 61 HOH HOH . G 3 HOH C 2 1102 56 HOH HOH . G 3 HOH C 3 1103 55 HOH HOH . G 3 HOH C 4 1104 48 HOH HOH . G 3 HOH C 5 1105 50 HOH HOH . G 3 HOH C 6 1106 2 HOH HOH . G 3 HOH C 7 1107 13 HOH HOH . G 3 HOH C 8 1108 49 HOH HOH . G 3 HOH C 9 1109 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 0.397 90.376 1.877 1 20 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . D 2 0.933 91.005 3.045 1 20 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . D 2 -0.364 89.101 2.204 1 20 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . D 2 -1.262 89.263 3.312 1 20 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . D 2 -1.062 88.467 1.018 1 20 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . D 2 -1.953 87.43 1.44 1 20 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #