data_8R58 # _model_server_result.job_id adIzEWGXDXXioYBYYMDDCQ _model_server_result.datetime_utc '2025-07-01 10:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8R58 # _exptl.entry_id 8R58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.377 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R58 _cell.length_a 82.309 _cell.length_b 88.256 _cell.length_c 39.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 O11' _chem_comp.formula_weight 448.377 _chem_comp.id QCT _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms quercitrin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C22 QCT sing 290 n n O10 C23 QCT sing 291 n n C22 C23 QCT sing 292 n n C22 C21 QCT sing 293 n n C23 C24 QCT sing 294 n n C24 O11 QCT sing 295 n n C24 C25 QCT sing 296 n n C21 O8 QCT sing 297 n n C21 O7 QCT sing 298 n n O8 C25 QCT sing 299 n n O7 C3 QCT sing 300 n n C25 C26 QCT sing 301 n n O2 C4 QCT doub 302 n n O5 C13 QCT sing 303 n n C4 C3 QCT sing 304 n n C4 C10 QCT sing 305 n n C3 C2 QCT doub 306 n n O3 C5 QCT sing 307 n n C12 C13 QCT doub 308 n y C12 C11 QCT sing 309 n y C13 C14 QCT sing 310 n y C2 C11 QCT sing 311 n n C2 O1 QCT sing 312 n n C10 C5 QCT doub 313 n y C10 C9 QCT sing 314 n y C11 C16 QCT doub 315 n y C5 C6 QCT sing 316 n y C14 O6 QCT sing 317 n n C14 C15 QCT doub 318 n y O1 C9 QCT sing 319 n n C9 C8 QCT doub 320 n y C16 C15 QCT sing 321 n y C6 C7 QCT doub 322 n y C8 C7 QCT sing 323 n y C7 O4 QCT sing 324 n n O10 H101 QCT sing 325 n n C23 H23 QCT sing 326 n n C22 H22 QCT sing 327 n n O9 HO91 QCT sing 328 n n C24 H24 QCT sing 329 n n O11 HO11 QCT sing 330 n n C25 H25 QCT sing 331 n n C26 H262 QCT sing 332 n n C26 H263 QCT sing 333 n n C26 H261 QCT sing 334 n n C21 H21 QCT sing 335 n n C12 H12 QCT sing 336 n n O5 HO51 QCT sing 337 n n O6 HO61 QCT sing 338 n n C15 H15 QCT sing 339 n n C16 H16 QCT sing 340 n n C8 H8 QCT sing 341 n n O4 HO4 QCT sing 342 n n C6 H6 QCT sing 343 n n O3 HO3 QCT sing 344 n n # _atom_sites.entry_id 8R58 _atom_sites.fract_transf_matrix[1][1] 0.012149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 QCT A 1 401 401 QCT QCT . D 4 GOL A 1 402 402 GOL GOL . E 5 HOH A 1 501 5 HOH HOH . E 5 HOH A 2 502 8 HOH HOH . E 5 HOH A 3 503 7 HOH HOH . E 5 HOH A 4 504 1 HOH HOH . E 5 HOH A 5 505 6 HOH HOH . E 5 HOH A 6 506 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 QCT . . . C 3 -29.537 13.653 -6.092 1 51.92 ? O10 QCT 401 A 1 HETATM 2 C C23 QCT . . . C 3 -28.856 12.404 -6.05 1 45.46 ? C23 QCT 401 A 1 HETATM 3 C C22 QCT . . . C 3 -29.835 11.316 -5.638 1 49.08 ? C22 QCT 401 A 1 HETATM 4 O O9 QCT . . . C 3 -31.014 11.362 -6.434 1 55.44 ? O9 QCT 401 A 1 HETATM 5 C C24 QCT . . . C 3 -28.245 12.114 -7.404 1 39.35 ? C24 QCT 401 A 1 HETATM 6 O O11 QCT . . . C 3 -27.277 13.102 -7.714 1 52.53 ? O11 QCT 401 A 1 HETATM 7 C C25 QCT . . . C 3 -27.584 10.746 -7.366 1 42.12 ? C25 QCT 401 A 1 HETATM 8 C C26 QCT . . . C 3 -27 10.327 -8.692 1 29.94 ? C26 QCT 401 A 1 HETATM 9 O O8 QCT . . . C 3 -28.578 9.763 -7.016 1 39.22 ? O8 QCT 401 A 1 HETATM 10 C C21 QCT . . . C 3 -29.182 9.946 -5.752 1 42.27 ? C21 QCT 401 A 1 HETATM 11 O O7 QCT . . . C 3 -28.216 9.856 -4.723 1 52.32 ? O7 QCT 401 A 1 HETATM 12 C C3 QCT . . . C 3 -27.4 8.743 -4.66 1 48.2 ? C3 QCT 401 A 1 HETATM 13 C C4 QCT . . . C 3 -27.911 7.449 -4.736 1 42.8 ? C4 QCT 401 A 1 HETATM 14 O O2 QCT . . . C 3 -29.144 7.252 -4.857 1 48.4 ? O2 QCT 401 A 1 HETATM 15 C C2 QCT . . . C 3 -26.034 8.938 -4.519 1 40.13 ? C2 QCT 401 A 1 HETATM 16 C C11 QCT . . . C 3 -25.334 10.222 -4.409 1 37.16 ? C11 QCT 401 A 1 HETATM 17 C C12 QCT . . . C 3 -25.998 11.401 -4.048 1 38.15 ? C12 QCT 401 A 1 HETATM 18 C C13 QCT . . . C 3 -25.308 12.591 -3.931 1 50.72 ? C13 QCT 401 A 1 HETATM 19 O O5 QCT . . . C 3 -25.956 13.749 -3.593 1 43.85 ? O5 QCT 401 A 1 HETATM 20 C C14 QCT . . . C 3 -23.932 12.622 -4.154 1 50.78 ? C14 QCT 401 A 1 HETATM 21 O O6 QCT . . . C 3 -23.247 13.8 -4.031 1 48.65 ? O6 QCT 401 A 1 HETATM 22 C C15 QCT . . . C 3 -23.263 11.468 -4.492 1 36.23 ? C15 QCT 401 A 1 HETATM 23 C C16 QCT . . . C 3 -23.958 10.277 -4.611 1 27.63 ? C16 QCT 401 A 1 HETATM 24 O O1 QCT . . . C 3 -25.187 7.866 -4.459 1 29.43 ? O1 QCT 401 A 1 HETATM 25 C C9 QCT . . . C 3 -25.64 6.585 -4.524 1 37.86 ? C9 QCT 401 A 1 HETATM 26 C C8 QCT . . . C 3 -24.681 5.597 -4.453 1 30.44 ? C8 QCT 401 A 1 HETATM 27 C C7 QCT . . . C 3 -25.116 4.285 -4.525 1 28.74 ? C7 QCT 401 A 1 HETATM 28 O O4 QCT . . . C 3 -24.191 3.282 -4.455 1 40.21 ? O4 QCT 401 A 1 HETATM 29 C C6 QCT . . . C 3 -26.472 3.967 -4.664 1 37.59 ? C6 QCT 401 A 1 HETATM 30 C C5 QCT . . . C 3 -27.401 4.974 -4.736 1 46.43 ? C5 QCT 401 A 1 HETATM 31 C C10 QCT . . . C 3 -26.999 6.327 -4.666 1 37.43 ? C10 QCT 401 A 1 HETATM 32 O O3 QCT . . . C 3 -28.735 4.703 -4.875 1 47.4 ? O3 QCT 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #