data_8R5E
#
_model_server_result.job_id            3KwXlbEoaANAi-MU--_7Nw 
_model_server_result.datetime_utc      '2025-02-26 19:25:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r5e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    8R5E 
#
_exptl.entry_id    8R5E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8R5E 
_cell.length_a            65.341 
_cell.length_b            75.249 
_cell.length_c            82.869 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R5E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 165 A CYS 163 1_555 D C3 Y6K . A Y6K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
metalc ? metalc1 A OD1 ASN 158 A ASN 156 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc2 B MG MG . A MG 401 1_555 C O2A ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc3 B MG MG . A MG 401 1_555 C O1G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc4 B MG MG . A MG 401 1_555 F O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8R5E 
_atom_sites.fract_transf_matrix[1][1]    0.015304 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 405 MG MG . 
C 3 ANP A 1 402 407 ANP ANP . 
D 4 Y6K A 1 403 408 Y6K R77 . 
E 5 GOL A 1 404 409 GOL GOL . 
F 6 HOH A 1 501 72 HOH HOH . 
F 6 HOH A 2 502 71 HOH HOH . 
F 6 HOH A 3 503 73 HOH HOH . 
F 6 HOH A 4 504 89 HOH HOH . 
F 6 HOH A 5 505 53 HOH HOH . 
F 6 HOH A 6 506 47 HOH HOH . 
F 6 HOH A 7 507 110 HOH HOH . 
F 6 HOH A 8 508 75 HOH HOH . 
F 6 HOH A 9 509 97 HOH HOH . 
F 6 HOH A 10 510 66 HOH HOH . 
F 6 HOH A 11 511 105 HOH HOH . 
F 6 HOH A 12 512 90 HOH HOH . 
F 6 HOH A 13 513 82 HOH HOH . 
F 6 HOH A 14 514 77 HOH HOH . 
F 6 HOH A 15 515 126 HOH HOH . 
F 6 HOH A 16 516 79 HOH HOH . 
F 6 HOH A 17 517 85 HOH HOH . 
F 6 HOH A 18 518 27 HOH HOH . 
F 6 HOH A 19 519 95 HOH HOH . 
F 6 HOH A 20 520 128 HOH HOH . 
F 6 HOH A 21 521 112 HOH HOH . 
F 6 HOH A 22 522 40 HOH HOH . 
F 6 HOH A 23 523 50 HOH HOH . 
F 6 HOH A 24 524 33 HOH HOH . 
F 6 HOH A 25 525 86 HOH HOH . 
F 6 HOH A 26 526 31 HOH HOH . 
F 6 HOH A 27 527 39 HOH HOH . 
F 6 HOH A 28 528 102 HOH HOH . 
F 6 HOH A 29 529 4 HOH HOH . 
F 6 HOH A 30 530 117 HOH HOH . 
F 6 HOH A 31 531 123 HOH HOH . 
F 6 HOH A 32 532 92 HOH HOH . 
F 6 HOH A 33 533 6 HOH HOH . 
F 6 HOH A 34 534 113 HOH HOH . 
F 6 HOH A 35 535 51 HOH HOH . 
F 6 HOH A 36 536 23 HOH HOH . 
F 6 HOH A 37 537 30 HOH HOH . 
F 6 HOH A 38 538 119 HOH HOH . 
F 6 HOH A 39 539 70 HOH HOH . 
F 6 HOH A 40 540 36 HOH HOH . 
F 6 HOH A 41 541 84 HOH HOH . 
F 6 HOH A 42 542 131 HOH HOH . 
F 6 HOH A 43 543 120 HOH HOH . 
F 6 HOH A 44 544 58 HOH HOH . 
F 6 HOH A 45 545 15 HOH HOH . 
F 6 HOH A 46 546 122 HOH HOH . 
F 6 HOH A 47 547 65 HOH HOH . 
F 6 HOH A 48 548 68 HOH HOH . 
F 6 HOH A 49 549 60 HOH HOH . 
F 6 HOH A 50 550 20 HOH HOH . 
F 6 HOH A 51 551 9 HOH HOH . 
F 6 HOH A 52 552 7 HOH HOH . 
F 6 HOH A 53 553 18 HOH HOH . 
F 6 HOH A 54 554 55 HOH HOH . 
F 6 HOH A 55 555 67 HOH HOH . 
F 6 HOH A 56 556 28 HOH HOH . 
F 6 HOH A 57 557 106 HOH HOH . 
F 6 HOH A 58 558 29 HOH HOH . 
F 6 HOH A 59 559 21 HOH HOH . 
F 6 HOH A 60 560 35 HOH HOH . 
F 6 HOH A 61 561 5 HOH HOH . 
F 6 HOH A 62 562 49 HOH HOH . 
F 6 HOH A 63 563 12 HOH HOH . 
F 6 HOH A 64 564 11 HOH HOH . 
F 6 HOH A 65 565 17 HOH HOH . 
F 6 HOH A 66 566 37 HOH HOH . 
F 6 HOH A 67 567 62 HOH HOH . 
F 6 HOH A 68 568 109 HOH HOH . 
F 6 HOH A 69 569 1 HOH HOH . 
F 6 HOH A 70 570 8 HOH HOH . 
F 6 HOH A 71 571 103 HOH HOH . 
F 6 HOH A 72 572 45 HOH HOH . 
F 6 HOH A 73 573 16 HOH HOH . 
F 6 HOH A 74 574 125 HOH HOH . 
F 6 HOH A 75 575 42 HOH HOH . 
F 6 HOH A 76 576 26 HOH HOH . 
F 6 HOH A 77 577 116 HOH HOH . 
F 6 HOH A 78 578 38 HOH HOH . 
F 6 HOH A 79 579 44 HOH HOH . 
F 6 HOH A 80 580 80 HOH HOH . 
F 6 HOH A 81 581 124 HOH HOH . 
F 6 HOH A 82 582 10 HOH HOH . 
F 6 HOH A 83 583 87 HOH HOH . 
F 6 HOH A 84 584 64 HOH HOH . 
F 6 HOH A 85 585 3 HOH HOH . 
F 6 HOH A 86 586 13 HOH HOH . 
F 6 HOH A 87 587 2 HOH HOH . 
F 6 HOH A 88 588 115 HOH HOH . 
F 6 HOH A 89 589 88 HOH HOH . 
F 6 HOH A 90 590 25 HOH HOH . 
F 6 HOH A 91 591 94 HOH HOH . 
F 6 HOH A 92 592 81 HOH HOH . 
F 6 HOH A 93 593 54 HOH HOH . 
F 6 HOH A 94 594 63 HOH HOH . 
F 6 HOH A 95 595 41 HOH HOH . 
F 6 HOH A 96 596 101 HOH HOH . 
F 6 HOH A 97 597 14 HOH HOH . 
F 6 HOH A 98 598 76 HOH HOH . 
F 6 HOH A 99 599 111 HOH HOH . 
F 6 HOH A 100 600 59 HOH HOH . 
F 6 HOH A 101 601 24 HOH HOH . 
F 6 HOH A 102 602 46 HOH HOH . 
F 6 HOH A 103 603 132 HOH HOH . 
F 6 HOH A 104 604 61 HOH HOH . 
F 6 HOH A 105 605 34 HOH HOH . 
F 6 HOH A 106 606 121 HOH HOH . 
F 6 HOH A 107 607 107 HOH HOH . 
F 6 HOH A 108 608 19 HOH HOH . 
F 6 HOH A 109 609 129 HOH HOH . 
F 6 HOH A 110 610 52 HOH HOH . 
F 6 HOH A 111 611 57 HOH HOH . 
F 6 HOH A 112 612 56 HOH HOH . 
F 6 HOH A 113 613 69 HOH HOH . 
F 6 HOH A 114 614 32 HOH HOH . 
F 6 HOH A 115 615 22 HOH HOH . 
F 6 HOH A 116 616 104 HOH HOH . 
F 6 HOH A 117 617 91 HOH HOH . 
F 6 HOH A 118 618 99 HOH HOH . 
F 6 HOH A 119 619 43 HOH HOH . 
F 6 HOH A 120 620 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 8.842 8.744 11.052 1 91.91 ? PG ANP 402 A 1 
HETATM 2 O O1G ANP . . . C 3 7.796 7.706 11.375 1 83.07 ? O1G ANP 402 A 1 
HETATM 3 O O2G ANP . . . C 3 8.247 10.115 11.186 1 92.3 ? O2G ANP 402 A 1 
HETATM 4 O O3G ANP . . . C 3 9.241 8.483 9.618 1 82.32 ? O3G ANP 402 A 1 
HETATM 5 P PB ANP . . . C 3 11.326 7.629 11.922 1 102.8 ? PB ANP 402 A 1 
HETATM 6 O O1B ANP . . . C 3 11.584 7.366 10.465 1 110.58 ? O1B ANP 402 A 1 
HETATM 7 O O2B ANP . . . C 3 12.502 7.939 12.81 1 107.77 ? O2B ANP 402 A 1 
HETATM 8 N N3B ANP . . . C 3 10.089 8.674 12.11 1 93.39 ? N3B ANP 402 A 1 
HETATM 9 P PA ANP . . . C 3 10.079 4.94 11.797 1 79.1 ? PA ANP 402 A 1 
HETATM 10 O O1A ANP . . . C 3 10.27 3.817 12.767 1 87.59 ? O1A ANP 402 A 1 
HETATM 11 O O2A ANP . . . C 3 8.673 5.312 11.438 1 78.66 ? O2A ANP 402 A 1 
HETATM 12 O O3A ANP . . . C 3 10.765 6.237 12.463 1 90.31 ? O3A ANP 402 A 1 
HETATM 13 O O5' ANP . . . C 3 10.926 4.638 10.45 1 70.74 ? O5' ANP 402 A 1 
HETATM 14 C C5' ANP . . . C 3 10.293 4.616 9.126 1 63.53 ? C5' ANP 402 A 1 
HETATM 15 C C4' ANP . . . C 3 10.437 3.264 8.467 1 59.75 ? C4' ANP 402 A 1 
HETATM 16 O O4' ANP . . . C 3 11.363 2.419 9.203 1 56.87 ? O4' ANP 402 A 1 
HETATM 17 C C3' ANP . . . C 3 9.154 2.43 8.385 1 57.63 ? C3' ANP 402 A 1 
HETATM 18 O O3' ANP . . . C 3 8.352 2.753 7.252 1 52.68 ? O3' ANP 402 A 1 
HETATM 19 C C2' ANP . . . C 3 9.704 1.009 8.244 1 54.49 ? C2' ANP 402 A 1 
HETATM 20 O O2' ANP . . . C 3 9.913 0.683 6.89 1 55.19 ? O2' ANP 402 A 1 
HETATM 21 C C1' ANP . . . C 3 11.013 1.058 9.034 1 53.31 ? C1' ANP 402 A 1 
HETATM 22 N N9 ANP . . . C 3 10.894 0.404 10.362 1 50.77 ? N9 ANP 402 A 1 
HETATM 23 C C8 ANP . . . C 3 10.898 1.008 11.59 1 45.13 ? C8 ANP 402 A 1 
HETATM 24 N N7 ANP . . . C 3 10.753 0.161 12.584 1 41.59 ? N7 ANP 402 A 1 
HETATM 25 C C5 ANP . . . C 3 10.646 -1.079 11.976 1 43.38 ? C5 ANP 402 A 1 
HETATM 26 C C6 ANP . . . C 3 10.484 -2.38 12.495 1 40.33 ? C6 ANP 402 A 1 
HETATM 27 N N6 ANP . . . C 3 10.407 -2.637 13.793 1 36.87 ? N6 ANP 402 A 1 
HETATM 28 N N1 ANP . . . C 3 10.409 -3.41 11.612 1 41.01 ? N1 ANP 402 A 1 
HETATM 29 C C2 ANP . . . C 3 10.507 -3.122 10.301 1 44.9 ? C2 ANP 402 A 1 
HETATM 30 N N3 ANP . . . C 3 10.658 -1.938 9.7 1 42.94 ? N3 ANP 402 A 1 
HETATM 31 C C4 ANP . . . C 3 10.726 -0.943 10.602 1 47.08 ? C4 ANP 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#