data_8R5E
#
_model_server_result.job_id            MZ7EvrpG8WfvDHBFkC3iBw 
_model_server_result.datetime_utc      '2025-02-26 18:45:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r5e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    8R5E 
#
_exptl.entry_id    8R5E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              294.343 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{R},5~{R})-6-methylidene-4-oxidanylidene-bicyclo[3.2.1]octane-1,3-dicarboxylate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8R5E 
_cell.length_a            65.341 
_cell.length_b            75.249 
_cell.length_c            82.869 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R5E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 165 A CYS 163 1_555 D C3 Y6K . A Y6K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
metalc ? metalc1 A OD1 ASN 158 A ASN 156 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc2 B MG MG . A MG 401 1_555 C O2A ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc3 B MG MG . A MG 401 1_555 C O1G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc4 B MG MG . A MG 401 1_555 F O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
#
_chem_comp.formula           'C16 H22 O5' 
_chem_comp.formula_weight    294.343 
_chem_comp.id                Y6K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{R},5~{R})-6-methylidene-4-oxidanylidene-bicyclo[3.2.1]octane-1,3-dicarboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 Y6K sing 439 n n 
C20 C17 Y6K sing 440 n n 
C17 O3 Y6K sing 441 n n 
C17 C19 Y6K sing 442 n n 
O3 C16 Y6K sing 443 n n 
C16 O2 Y6K doub 444 n n 
C16 C2 Y6K sing 445 n n 
C7 C8 Y6K sing 446 n n 
C7 C4 Y6K sing 447 n n 
C9 C8 Y6K doub 448 n n 
C8 C6 Y6K sing 449 n n 
O1 C14 Y6K doub 450 n n 
C2 C3 Y6K sing 451 n n 
C2 C1 Y6K sing 452 n n 
C3 C4 Y6K sing 453 n n 
C4 C14 Y6K sing 454 n n 
C4 C5 Y6K sing 455 n n 
O4 C1 Y6K doub 456 n n 
C1 C6 Y6K sing 457 n n 
C14 O Y6K sing 458 n n 
C6 C5 Y6K sing 459 n n 
O C15 Y6K sing 460 n n 
C2 H1 Y6K sing 461 n n 
C3 H2 Y6K sing 462 n n 
C3 H3 Y6K sing 463 n n 
C15 H4 Y6K sing 464 n n 
C15 H5 Y6K sing 465 n n 
C15 H6 Y6K sing 466 n n 
C19 H7 Y6K sing 467 n n 
C19 H8 Y6K sing 468 n n 
C19 H9 Y6K sing 469 n n 
C20 H10 Y6K sing 470 n n 
C20 H11 Y6K sing 471 n n 
C20 H12 Y6K sing 472 n n 
C18 H13 Y6K sing 473 n n 
C18 H14 Y6K sing 474 n n 
C18 H15 Y6K sing 475 n n 
C7 H16 Y6K sing 476 n n 
C7 H17 Y6K sing 477 n n 
C5 H18 Y6K sing 478 n n 
C5 H19 Y6K sing 479 n n 
C6 H20 Y6K sing 480 n n 
C9 H21 Y6K sing 481 n n 
C9 H22 Y6K sing 482 n n 
#
_atom_sites.entry_id                     8R5E 
_atom_sites.fract_transf_matrix[1][1]    0.015304 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 405 MG MG . 
C 3 ANP A 1 402 407 ANP ANP . 
D 4 Y6K A 1 403 408 Y6K R77 . 
E 5 GOL A 1 404 409 GOL GOL . 
F 6 HOH A 1 501 72 HOH HOH . 
F 6 HOH A 2 502 71 HOH HOH . 
F 6 HOH A 3 503 73 HOH HOH . 
F 6 HOH A 4 504 89 HOH HOH . 
F 6 HOH A 5 505 53 HOH HOH . 
F 6 HOH A 6 506 47 HOH HOH . 
F 6 HOH A 7 507 110 HOH HOH . 
F 6 HOH A 8 508 75 HOH HOH . 
F 6 HOH A 9 509 97 HOH HOH . 
F 6 HOH A 10 510 66 HOH HOH . 
F 6 HOH A 11 511 105 HOH HOH . 
F 6 HOH A 12 512 90 HOH HOH . 
F 6 HOH A 13 513 82 HOH HOH . 
F 6 HOH A 14 514 77 HOH HOH . 
F 6 HOH A 15 515 126 HOH HOH . 
F 6 HOH A 16 516 79 HOH HOH . 
F 6 HOH A 17 517 85 HOH HOH . 
F 6 HOH A 18 518 27 HOH HOH . 
F 6 HOH A 19 519 95 HOH HOH . 
F 6 HOH A 20 520 128 HOH HOH . 
F 6 HOH A 21 521 112 HOH HOH . 
F 6 HOH A 22 522 40 HOH HOH . 
F 6 HOH A 23 523 50 HOH HOH . 
F 6 HOH A 24 524 33 HOH HOH . 
F 6 HOH A 25 525 86 HOH HOH . 
F 6 HOH A 26 526 31 HOH HOH . 
F 6 HOH A 27 527 39 HOH HOH . 
F 6 HOH A 28 528 102 HOH HOH . 
F 6 HOH A 29 529 4 HOH HOH . 
F 6 HOH A 30 530 117 HOH HOH . 
F 6 HOH A 31 531 123 HOH HOH . 
F 6 HOH A 32 532 92 HOH HOH . 
F 6 HOH A 33 533 6 HOH HOH . 
F 6 HOH A 34 534 113 HOH HOH . 
F 6 HOH A 35 535 51 HOH HOH . 
F 6 HOH A 36 536 23 HOH HOH . 
F 6 HOH A 37 537 30 HOH HOH . 
F 6 HOH A 38 538 119 HOH HOH . 
F 6 HOH A 39 539 70 HOH HOH . 
F 6 HOH A 40 540 36 HOH HOH . 
F 6 HOH A 41 541 84 HOH HOH . 
F 6 HOH A 42 542 131 HOH HOH . 
F 6 HOH A 43 543 120 HOH HOH . 
F 6 HOH A 44 544 58 HOH HOH . 
F 6 HOH A 45 545 15 HOH HOH . 
F 6 HOH A 46 546 122 HOH HOH . 
F 6 HOH A 47 547 65 HOH HOH . 
F 6 HOH A 48 548 68 HOH HOH . 
F 6 HOH A 49 549 60 HOH HOH . 
F 6 HOH A 50 550 20 HOH HOH . 
F 6 HOH A 51 551 9 HOH HOH . 
F 6 HOH A 52 552 7 HOH HOH . 
F 6 HOH A 53 553 18 HOH HOH . 
F 6 HOH A 54 554 55 HOH HOH . 
F 6 HOH A 55 555 67 HOH HOH . 
F 6 HOH A 56 556 28 HOH HOH . 
F 6 HOH A 57 557 106 HOH HOH . 
F 6 HOH A 58 558 29 HOH HOH . 
F 6 HOH A 59 559 21 HOH HOH . 
F 6 HOH A 60 560 35 HOH HOH . 
F 6 HOH A 61 561 5 HOH HOH . 
F 6 HOH A 62 562 49 HOH HOH . 
F 6 HOH A 63 563 12 HOH HOH . 
F 6 HOH A 64 564 11 HOH HOH . 
F 6 HOH A 65 565 17 HOH HOH . 
F 6 HOH A 66 566 37 HOH HOH . 
F 6 HOH A 67 567 62 HOH HOH . 
F 6 HOH A 68 568 109 HOH HOH . 
F 6 HOH A 69 569 1 HOH HOH . 
F 6 HOH A 70 570 8 HOH HOH . 
F 6 HOH A 71 571 103 HOH HOH . 
F 6 HOH A 72 572 45 HOH HOH . 
F 6 HOH A 73 573 16 HOH HOH . 
F 6 HOH A 74 574 125 HOH HOH . 
F 6 HOH A 75 575 42 HOH HOH . 
F 6 HOH A 76 576 26 HOH HOH . 
F 6 HOH A 77 577 116 HOH HOH . 
F 6 HOH A 78 578 38 HOH HOH . 
F 6 HOH A 79 579 44 HOH HOH . 
F 6 HOH A 80 580 80 HOH HOH . 
F 6 HOH A 81 581 124 HOH HOH . 
F 6 HOH A 82 582 10 HOH HOH . 
F 6 HOH A 83 583 87 HOH HOH . 
F 6 HOH A 84 584 64 HOH HOH . 
F 6 HOH A 85 585 3 HOH HOH . 
F 6 HOH A 86 586 13 HOH HOH . 
F 6 HOH A 87 587 2 HOH HOH . 
F 6 HOH A 88 588 115 HOH HOH . 
F 6 HOH A 89 589 88 HOH HOH . 
F 6 HOH A 90 590 25 HOH HOH . 
F 6 HOH A 91 591 94 HOH HOH . 
F 6 HOH A 92 592 81 HOH HOH . 
F 6 HOH A 93 593 54 HOH HOH . 
F 6 HOH A 94 594 63 HOH HOH . 
F 6 HOH A 95 595 41 HOH HOH . 
F 6 HOH A 96 596 101 HOH HOH . 
F 6 HOH A 97 597 14 HOH HOH . 
F 6 HOH A 98 598 76 HOH HOH . 
F 6 HOH A 99 599 111 HOH HOH . 
F 6 HOH A 100 600 59 HOH HOH . 
F 6 HOH A 101 601 24 HOH HOH . 
F 6 HOH A 102 602 46 HOH HOH . 
F 6 HOH A 103 603 132 HOH HOH . 
F 6 HOH A 104 604 61 HOH HOH . 
F 6 HOH A 105 605 34 HOH HOH . 
F 6 HOH A 106 606 121 HOH HOH . 
F 6 HOH A 107 607 107 HOH HOH . 
F 6 HOH A 108 608 19 HOH HOH . 
F 6 HOH A 109 609 129 HOH HOH . 
F 6 HOH A 110 610 52 HOH HOH . 
F 6 HOH A 111 611 57 HOH HOH . 
F 6 HOH A 112 612 56 HOH HOH . 
F 6 HOH A 113 613 69 HOH HOH . 
F 6 HOH A 114 614 32 HOH HOH . 
F 6 HOH A 115 615 22 HOH HOH . 
F 6 HOH A 116 616 104 HOH HOH . 
F 6 HOH A 117 617 91 HOH HOH . 
F 6 HOH A 118 618 99 HOH HOH . 
F 6 HOH A 119 619 43 HOH HOH . 
F 6 HOH A 120 620 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 Y6K . . . D 4 -4.145 -11.833 5.612 1 27.36 ? C1 Y6K 403 A 1 
HETATM 2 C C2 Y6K . . . D 4 -2.689 -12.059 5.231 1 27.27 ? C2 Y6K 403 A 1 
HETATM 3 C C3 Y6K . . . D 4 -2.176 -13.482 5.273 1 26.61 ? C3 Y6K 403 A 1 
HETATM 4 C C8 Y6K . . . D 4 -5.399 -13.812 4.924 1 30.46 ? C8 Y6K 403 A 1 
HETATM 5 C C14 Y6K . . . D 4 -2.391 -15.867 5.743 1 32.53 ? C14 Y6K 403 A 1 
HETATM 6 C C15 Y6K . . . D 4 -1.742 -17.477 7.295 1 47.48 ? C15 Y6K 403 A 1 
HETATM 7 C C16 Y6K . . . D 4 -2.136 -10.96 4.366 1 29.29 ? C16 Y6K 403 A 1 
HETATM 8 C C17 Y6K . . . D 4 -0.018 -10.396 3.14 1 34.34 ? C17 Y6K 403 A 1 
HETATM 9 C C19 Y6K . . . D 4 0.445 -9.363 4.132 1 33.52 ? C19 Y6K 403 A 1 
HETATM 10 C C20 Y6K . . . D 4 1.175 -11.21 2.687 1 34.82 ? C20 Y6K 403 A 1 
HETATM 11 C C18 Y6K . . . D 4 -0.757 -9.752 1.972 1 35 ? C18 Y6K 403 A 1 
HETATM 12 C C7 Y6K . . . D 4 -4.269 -14.684 4.418 1 33.58 ? C7 Y6K 403 A 1 
HETATM 13 C C5 Y6K . . . D 4 -3.92 -14.047 6.74 1 29.1 ? C5 Y6K 403 A 1 
HETATM 14 C C6 Y6K . . . D 4 -4.906 -13.043 6.13 1 29.05 ? C6 Y6K 403 A 1 
HETATM 15 C C9 Y6K . . . D 4 -6.618 -13.727 4.432 1 30.52 ? C9 Y6K 403 A 1 
HETATM 16 C C4 Y6K . . . D 4 -3.164 -14.585 5.492 1 30.01 ? C4 Y6K 403 A 1 
HETATM 17 O O4 Y6K . . . D 4 -4.642 -10.715 5.591 1 29.44 ? O4 Y6K 403 A 1 
HETATM 18 O O3 Y6K . . . D 4 -0.964 -11.323 3.827 1 33.71 ? O3 Y6K 403 A 1 
HETATM 19 O O2 Y6K . . . D 4 -2.616 -9.863 4.398 1 31.6 ? O2 Y6K 403 A 1 
HETATM 20 O O Y6K . . . D 4 -2.498 -16.279 6.991 1 37.86 ? O Y6K 403 A 1 
HETATM 21 O O1 Y6K . . . D 4 -1.675 -16.395 4.947 1 33.14 ? O1 Y6K 403 A 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#