data_8R5H # _model_server_result.job_id LSoGjqCHfplA-i-B_RDxvw _model_server_result.datetime_utc '2024-10-19 03:52:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1101}' # _entry.id 8R5H # _exptl.entry_id 8R5H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 101.147 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanylpentan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R5H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG CYS 93 C CYS 93 1_555 L C3 SY8 . C SY8 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? covale ? covale2 C CB SER 138 C SER 138 1_555 L C SY8 . C SY8 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 L N SY8 . C SY8 1101 1_555 D C GLY 75 U GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 L C SY8 . C SY8 1101 1_555 F SG CYS 23 F CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? metalc ? metalc1 B SG CYS 38 R CYS 42 1_555 I ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 B SG CYS 41 R CYS 45 1_555 I ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 B SG CYS 49 R CYS 53 1_555 K ZN ZN . R ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 B SG CYS 52 R CYS 56 1_555 K ZN ZN . R ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 B SG CYS 64 R CYS 68 1_555 K ZN ZN . R ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 B SG CYS 71 R CYS 75 1_555 J ZN ZN . R ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 B ND1 HIS 73 R HIS 77 1_555 J ZN ZN . R ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc8 B ND1 HIS 76 R HIS 80 1_555 I ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 B ND1 HIS 78 R HIS 82 1_555 K ZN ZN . R ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 B SG CYS 79 R CYS 83 1_555 I ZN ZN . R ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc11 B SG CYS 90 R CYS 94 1_555 J ZN ZN . R ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 B OD2 ASP 93 R ASP 97 1_555 J ZN ZN . R ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? # _chem_comp.formula 'C5 H11 N O' _chem_comp.formula_weight 101.147 _chem_comp.id SY8 _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanylpentan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 SY8 sing 425 n n C3 C2 SY8 sing 426 n n C4 N SY8 sing 427 n n C2 C1 SY8 sing 428 n n C C1 SY8 sing 429 n n C1 O SY8 doub 430 n n N H1 SY8 sing 431 n n N H2 SY8 sing 432 n n C H4 SY8 sing 433 n n C H5 SY8 sing 434 n n C H6 SY8 sing 435 n n C2 H7 SY8 sing 436 n n C2 H8 SY8 sing 437 n n C3 H9 SY8 sing 438 n n C3 H10 SY8 sing 439 n n C4 H11 SY8 sing 440 n n C4 H12 SY8 sing 441 n n # _atom_sites.entry_id 8R5H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 ZN R 1 201 201 ZN ZN . J 9 ZN R 1 202 202 ZN ZN . K 9 ZN R 1 203 203 ZN ZN . L 10 SY8 C 1 1101 201 SY8 SY8 . M 11 759 H 1 301 301 759 759 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SY8 . . . L 10 171.892 184.682 133.952 1 112.2 ? N SY8 1101 C 1 HETATM 2 C C SY8 . . . L 10 172.799 189.839 136.064 1 112.2 ? C SY8 1101 C 1 HETATM 3 O O SY8 . . . L 10 171.381 188.692 134.537 1 112.2 ? O SY8 1101 C 1 HETATM 4 C C1 SY8 . . . L 10 171.951 188.68 135.616 1 112.2 ? C1 SY8 1101 C 1 HETATM 5 C C2 SY8 . . . L 10 171.79 187.478 136.525 1 112.2 ? C2 SY8 1101 C 1 HETATM 6 C C3 SY8 . . . L 10 171.326 186.251 135.74 1 112.2 ? C3 SY8 1101 C 1 HETATM 7 C C4 SY8 . . . L 10 172.436 185.725 134.837 1 112.2 ? C4 SY8 1101 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #