data_8R5L # _model_server_result.job_id rfoNK1ThxfDjZld2p9WhZA _model_server_result.datetime_utc '2024-12-27 17:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 8R5L # _exptl.entry_id 8R5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.11 _cell.angle_gamma 90 _cell.entry_id 8R5L _cell.length_a 93.1 _cell.length_b 72.81 _cell.length_c 52.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 90 A CYS 90 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 122 A CYS 122 1_555 A SG CYS 133 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 127 A CYS 127 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 A SG CYS 144 A CYS 144 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 159 A CYS 159 1_555 A SG CYS 203 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 A SG CYS 172 A CYS 172 1_555 A SG CYS 185 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf8 A SG CYS 189 A CYS 189 1_555 A SG CYS 216 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf9 A SG CYS 221 A CYS 221 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 A SG CYS 234 A CYS 234 1_555 A SG CYS 247 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf11 A SG CYS 251 A CYS 251 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 4 A ASN 4 1_555 F C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 124 A ASN 124 1_555 G C1 NAG . A NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 A ND2 ASN 139 A ASN 139 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 A ND2 ASN 158 A ASN 158 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale5 A ND2 ASN 178 A ASN 178 1_555 E C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale6 A ND2 ASN 182 A ASN 182 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale7 A ND2 ASN 244 A ASN 244 1_555 H C1 NAG . A NAG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OE1 GLU 80 A GLU 80 1_555 I CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc2 A OD1 ASN 82 A ASN 82 1_555 I CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc3 A OE1 GLU 88 A GLU 88 1_555 I CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 A OD1 ASN 105 A ASN 105 1_555 I CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 A O ASP 106 A ASP 106 1_555 I CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc6 A OD1 ASP 106 A ASP 106 1_555 I CA CA . A CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc7 I CA CA . A CA 308 1_555 J O3 Y6T . A Y6T 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 I CA CA . A CA 308 1_555 J O4 Y6T . A Y6T 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.145 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8R5L _atom_sites.fract_transf_matrix[1][1] 0.010741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000772 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 281 NAG NAG . C 2 NAG A 1 302 282 NAG NAG . D 2 NAG A 1 303 283 NAG NAG . E 2 NAG A 1 304 284 NAG NAG . F 2 NAG A 1 305 285 NAG NAG . G 2 NAG A 1 306 286 NAG NAG . H 2 NAG A 1 307 287 NAG NAG . I 3 CA A 1 308 302 CA CA . J 4 Y6T A 1 309 900 Y6T DRG . K 5 HOH A 1 401 25 HOH HOH . K 5 HOH A 2 402 34 HOH HOH . K 5 HOH A 3 403 1 HOH HOH . K 5 HOH A 4 404 31 HOH HOH . K 5 HOH A 5 405 3 HOH HOH . K 5 HOH A 6 406 2 HOH HOH . K 5 HOH A 7 407 39 HOH HOH . K 5 HOH A 8 408 15 HOH HOH . K 5 HOH A 9 409 27 HOH HOH . K 5 HOH A 10 410 35 HOH HOH . K 5 HOH A 11 411 22 HOH HOH . K 5 HOH A 12 412 21 HOH HOH . K 5 HOH A 13 413 4 HOH HOH . K 5 HOH A 14 414 28 HOH HOH . K 5 HOH A 15 415 14 HOH HOH . K 5 HOH A 16 416 56 HOH HOH . K 5 HOH A 17 417 17 HOH HOH . K 5 HOH A 18 418 53 HOH HOH . K 5 HOH A 19 419 9 HOH HOH . K 5 HOH A 20 420 40 HOH HOH . K 5 HOH A 21 421 12 HOH HOH . K 5 HOH A 22 422 44 HOH HOH . K 5 HOH A 23 423 41 HOH HOH . K 5 HOH A 24 424 11 HOH HOH . K 5 HOH A 25 425 7 HOH HOH . K 5 HOH A 26 426 10 HOH HOH . K 5 HOH A 27 427 20 HOH HOH . K 5 HOH A 28 428 19 HOH HOH . K 5 HOH A 29 429 29 HOH HOH . K 5 HOH A 30 430 48 HOH HOH . K 5 HOH A 31 431 57 HOH HOH . K 5 HOH A 32 432 16 HOH HOH . K 5 HOH A 33 433 38 HOH HOH . K 5 HOH A 34 434 42 HOH HOH . K 5 HOH A 35 435 5 HOH HOH . K 5 HOH A 36 436 36 HOH HOH . K 5 HOH A 37 437 49 HOH HOH . K 5 HOH A 38 438 24 HOH HOH . K 5 HOH A 39 439 26 HOH HOH . K 5 HOH A 40 440 55 HOH HOH . K 5 HOH A 41 441 18 HOH HOH . K 5 HOH A 42 442 54 HOH HOH . K 5 HOH A 43 443 58 HOH HOH . K 5 HOH A 44 444 37 HOH HOH . K 5 HOH A 45 445 6 HOH HOH . K 5 HOH A 46 446 47 HOH HOH . K 5 HOH A 47 447 30 HOH HOH . K 5 HOH A 48 448 45 HOH HOH . K 5 HOH A 49 449 50 HOH HOH . K 5 HOH A 50 450 13 HOH HOH . K 5 HOH A 51 451 23 HOH HOH . K 5 HOH A 52 452 32 HOH HOH . K 5 HOH A 53 453 51 HOH HOH . K 5 HOH A 54 454 52 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.191 _atom_site.Cartn_y -35.32 _atom_site.Cartn_z 43.951 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.86 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 308 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #