data_8R5N # _model_server_result.job_id 3klDFOBNL_cCUoGpBQa-4Q _model_server_result.datetime_utc '2025-01-11 08:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8R5N # _exptl.entry_id 8R5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.08 _cell.angle_gamma 90 _cell.entry_id 8R5N _cell.length_a 67.876 _cell.length_b 33.861 _cell.length_c 84.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8R5N _atom_sites.fract_transf_matrix[1][1] 0.014733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 201 1 ATP ATP . D 2 ATP B 1 201 2 ATP ATP . E 3 HOH A 1 301 48 HOH HOH . E 3 HOH A 2 302 225 HOH HOH . E 3 HOH A 3 303 114 HOH HOH . E 3 HOH A 4 304 75 HOH HOH . E 3 HOH A 5 305 50 HOH HOH . E 3 HOH A 6 306 90 HOH HOH . E 3 HOH A 7 307 21 HOH HOH . E 3 HOH A 8 308 58 HOH HOH . E 3 HOH A 9 309 62 HOH HOH . E 3 HOH A 10 310 180 HOH HOH . E 3 HOH A 11 311 17 HOH HOH . E 3 HOH A 12 312 18 HOH HOH . E 3 HOH A 13 313 223 HOH HOH . E 3 HOH A 14 314 14 HOH HOH . E 3 HOH A 15 315 167 HOH HOH . E 3 HOH A 16 316 1 HOH HOH . E 3 HOH A 17 317 84 HOH HOH . E 3 HOH A 18 318 34 HOH HOH . E 3 HOH A 19 319 96 HOH HOH . E 3 HOH A 20 320 40 HOH HOH . E 3 HOH A 21 321 123 HOH HOH . E 3 HOH A 22 322 133 HOH HOH . E 3 HOH A 23 323 72 HOH HOH . E 3 HOH A 24 324 66 HOH HOH . E 3 HOH A 25 325 41 HOH HOH . E 3 HOH A 26 326 190 HOH HOH . E 3 HOH A 27 327 10 HOH HOH . E 3 HOH A 28 328 172 HOH HOH . E 3 HOH A 29 329 226 HOH HOH . E 3 HOH A 30 330 125 HOH HOH . E 3 HOH A 31 331 247 HOH HOH . E 3 HOH A 32 332 6 HOH HOH . E 3 HOH A 33 333 26 HOH HOH . E 3 HOH A 34 334 25 HOH HOH . E 3 HOH A 35 335 52 HOH HOH . E 3 HOH A 36 336 242 HOH HOH . E 3 HOH A 37 337 186 HOH HOH . E 3 HOH A 38 338 228 HOH HOH . E 3 HOH A 39 339 245 HOH HOH . E 3 HOH A 40 340 49 HOH HOH . E 3 HOH A 41 341 151 HOH HOH . E 3 HOH A 42 342 98 HOH HOH . E 3 HOH A 43 343 55 HOH HOH . E 3 HOH A 44 344 13 HOH HOH . E 3 HOH A 45 345 28 HOH HOH . E 3 HOH A 46 346 7 HOH HOH . E 3 HOH A 47 347 54 HOH HOH . E 3 HOH A 48 348 112 HOH HOH . E 3 HOH A 49 349 83 HOH HOH . E 3 HOH A 50 350 53 HOH HOH . E 3 HOH A 51 351 30 HOH HOH . E 3 HOH A 52 352 251 HOH HOH . E 3 HOH A 53 353 61 HOH HOH . E 3 HOH A 54 354 181 HOH HOH . E 3 HOH A 55 355 219 HOH HOH . E 3 HOH A 56 356 234 HOH HOH . E 3 HOH A 57 357 152 HOH HOH . E 3 HOH A 58 358 70 HOH HOH . E 3 HOH A 59 359 113 HOH HOH . E 3 HOH A 60 360 168 HOH HOH . E 3 HOH A 61 361 244 HOH HOH . E 3 HOH A 62 362 171 HOH HOH . E 3 HOH A 63 363 175 HOH HOH . E 3 HOH A 64 364 145 HOH HOH . E 3 HOH A 65 365 250 HOH HOH . E 3 HOH A 66 366 246 HOH HOH . E 3 HOH A 67 367 137 HOH HOH . E 3 HOH A 68 368 188 HOH HOH . E 3 HOH A 69 369 241 HOH HOH . E 3 HOH A 70 370 143 HOH HOH . E 3 HOH A 71 371 196 HOH HOH . E 3 HOH A 72 372 199 HOH HOH . E 3 HOH A 73 373 153 HOH HOH . E 3 HOH A 74 374 248 HOH HOH . E 3 HOH A 75 375 166 HOH HOH . E 3 HOH A 76 376 221 HOH HOH . E 3 HOH A 77 377 117 HOH HOH . E 3 HOH A 78 378 195 HOH HOH . F 3 HOH B 1 301 44 HOH HOH . F 3 HOH B 2 302 229 HOH HOH . F 3 HOH B 3 303 76 HOH HOH . F 3 HOH B 4 304 115 HOH HOH . F 3 HOH B 5 305 222 HOH HOH . F 3 HOH B 6 306 19 HOH HOH . F 3 HOH B 7 307 121 HOH HOH . F 3 HOH B 8 308 20 HOH HOH . F 3 HOH B 9 309 140 HOH HOH . F 3 HOH B 10 310 51 HOH HOH . F 3 HOH B 11 311 46 HOH HOH . F 3 HOH B 12 312 81 HOH HOH . F 3 HOH B 13 313 5 HOH HOH . F 3 HOH B 14 314 105 HOH HOH . F 3 HOH B 15 315 107 HOH HOH . F 3 HOH B 16 316 146 HOH HOH . F 3 HOH B 17 317 230 HOH HOH . F 3 HOH B 18 318 106 HOH HOH . F 3 HOH B 19 319 201 HOH HOH . F 3 HOH B 20 320 47 HOH HOH . F 3 HOH B 21 321 64 HOH HOH . F 3 HOH B 22 322 27 HOH HOH . F 3 HOH B 23 323 31 HOH HOH . F 3 HOH B 24 324 2 HOH HOH . F 3 HOH B 25 325 170 HOH HOH . F 3 HOH B 26 326 227 HOH HOH . F 3 HOH B 27 327 148 HOH HOH . F 3 HOH B 28 328 12 HOH HOH . F 3 HOH B 29 329 235 HOH HOH . F 3 HOH B 30 330 231 HOH HOH . F 3 HOH B 31 331 102 HOH HOH . F 3 HOH B 32 332 33 HOH HOH . F 3 HOH B 33 333 22 HOH HOH . F 3 HOH B 34 334 155 HOH HOH . F 3 HOH B 35 335 56 HOH HOH . F 3 HOH B 36 336 232 HOH HOH . F 3 HOH B 37 337 42 HOH HOH . F 3 HOH B 38 338 37 HOH HOH . F 3 HOH B 39 339 45 HOH HOH . F 3 HOH B 40 340 214 HOH HOH . F 3 HOH B 41 341 216 HOH HOH . F 3 HOH B 42 342 9 HOH HOH . F 3 HOH B 43 343 130 HOH HOH . F 3 HOH B 44 344 132 HOH HOH . F 3 HOH B 45 345 57 HOH HOH . F 3 HOH B 46 346 243 HOH HOH . F 3 HOH B 47 347 71 HOH HOH . F 3 HOH B 48 348 82 HOH HOH . F 3 HOH B 49 349 192 HOH HOH . F 3 HOH B 50 350 109 HOH HOH . F 3 HOH B 51 351 60 HOH HOH . F 3 HOH B 52 352 65 HOH HOH . F 3 HOH B 53 353 233 HOH HOH . F 3 HOH B 54 354 178 HOH HOH . F 3 HOH B 55 355 29 HOH HOH . F 3 HOH B 56 356 15 HOH HOH . F 3 HOH B 57 357 59 HOH HOH . F 3 HOH B 58 358 99 HOH HOH . F 3 HOH B 59 359 237 HOH HOH . F 3 HOH B 60 360 120 HOH HOH . F 3 HOH B 61 361 240 HOH HOH . F 3 HOH B 62 362 80 HOH HOH . F 3 HOH B 63 363 39 HOH HOH . F 3 HOH B 64 364 63 HOH HOH . F 3 HOH B 65 365 118 HOH HOH . F 3 HOH B 66 366 164 HOH HOH . F 3 HOH B 67 367 238 HOH HOH . F 3 HOH B 68 368 239 HOH HOH . F 3 HOH B 69 369 198 HOH HOH . F 3 HOH B 70 370 177 HOH HOH . F 3 HOH B 71 371 95 HOH HOH . F 3 HOH B 72 372 135 HOH HOH . F 3 HOH B 73 373 236 HOH HOH . F 3 HOH B 74 374 249 HOH HOH . F 3 HOH B 75 375 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 16.714 5.219 21.538 1 61.67 ? PG ATP 201 A 1 HETATM 2 O O1G ATP . . . C 2 16.35 6.684 21.635 1 60.15 ? O1G ATP 201 A 1 HETATM 3 O O2G ATP . . . C 2 16.984 4.581 22.887 1 66.05 -1 O2G ATP 201 A 1 HETATM 4 O O3G ATP . . . C 2 17.809 4.942 20.527 1 64.92 -1 O3G ATP 201 A 1 HETATM 5 P PB ATP . . . C 2 13.996 4.953 20.474 1 60.86 ? PB ATP 201 A 1 HETATM 6 O O1B ATP . . . C 2 13.213 5.458 21.626 1 61.03 ? O1B ATP 201 A 1 HETATM 7 O O2B ATP . . . C 2 14.207 5.813 19.284 1 62.28 -1 O2B ATP 201 A 1 HETATM 8 O O3B ATP . . . C 2 15.43 4.465 20.972 1 62.38 ? O3B ATP 201 A 1 HETATM 9 P PA ATP . . . C 2 13.261 2.707 18.668 1 50.04 ? PA ATP 201 A 1 HETATM 10 O O1A ATP . . . C 2 12.256 3.335 17.777 1 48.05 ? O1A ATP 201 A 1 HETATM 11 O O2A ATP . . . C 2 13.119 1.276 19.037 1 47.04 -1 O2A ATP 201 A 1 HETATM 12 O O3A ATP . . . C 2 13.353 3.56 20.017 1 55.82 ? O3A ATP 201 A 1 HETATM 13 O O5' ATP . . . C 2 14.675 2.898 17.972 1 48.71 ? O5' ATP 201 A 1 HETATM 14 C C5' ATP . . . C 2 15.815 2.082 18.335 1 49.63 ? C5' ATP 201 A 1 HETATM 15 C C4' ATP . . . C 2 16.3 1.324 17.123 1 47.01 ? C4' ATP 201 A 1 HETATM 16 O O4' ATP . . . C 2 15.266 0.415 16.67 1 45.37 ? O4' ATP 201 A 1 HETATM 17 C C3' ATP . . . C 2 16.663 2.199 15.913 1 46.47 ? C3' ATP 201 A 1 HETATM 18 O O3' ATP . . . C 2 17.883 1.811 15.288 1 49 ? O3' ATP 201 A 1 HETATM 19 C C2' ATP . . . C 2 15.453 2.021 14.987 1 44.03 ? C2' ATP 201 A 1 HETATM 20 O O2' ATP . . . C 2 15.774 2.249 13.621 1 45.35 ? O2' ATP 201 A 1 HETATM 21 C C1' ATP . . . C 2 15.085 0.565 15.274 1 43.4 ? C1' ATP 201 A 1 HETATM 22 N N9 ATP . . . C 2 13.707 0.186 14.93 1 39.71 ? N9 ATP 201 A 1 HETATM 23 C C8 ATP . . . C 2 12.569 0.888 15.234 1 39.9 ? C8 ATP 201 A 1 HETATM 24 N N7 ATP . . . C 2 11.461 0.32 14.823 1 37.1 ? N7 ATP 201 A 1 HETATM 25 C C5 ATP . . . C 2 11.898 -0.839 14.198 1 38.02 ? C5 ATP 201 A 1 HETATM 26 C C6 ATP . . . C 2 11.215 -1.841 13.482 1 38.59 ? C6 ATP 201 A 1 HETATM 27 N N6 ATP . . . C 2 9.891 -1.828 13.272 1 38.21 ? N6 ATP 201 A 1 HETATM 28 N N1 ATP . . . C 2 11.952 -2.829 12.922 1 38.39 ? N1 ATP 201 A 1 HETATM 29 C C2 ATP . . . C 2 13.285 -2.8 13.07 1 38.65 ? C2 ATP 201 A 1 HETATM 30 N N3 ATP . . . C 2 14.036 -1.901 13.714 1 37.45 ? N3 ATP 201 A 1 HETATM 31 C C4 ATP . . . C 2 13.281 -0.938 14.258 1 38.44 ? C4 ATP 201 A 1 HETATM 32 H "H5'1" ATP . . . C 2 15.628 1.429 19.192 1 49.63 ? "H5'1" ATP 201 A 1 HETATM 33 H "H5'2" ATP . . . C 2 16.589 2.783 18.66 1 49.63 ? "H5'2" ATP 201 A 1 HETATM 34 H H4' ATP . . . C 2 17.118 0.672 17.45 1 47 ? H4' ATP 201 A 1 HETATM 35 H H3' ATP . . . C 2 16.755 3.258 16.185 1 46.47 ? H3' ATP 201 A 1 HETATM 36 H HO3' ATP . . . C 2 18.075 2.466 14.594 1 49 ? HO3' ATP 201 A 1 HETATM 37 H H2' ATP . . . C 2 14.669 2.739 15.255 1 44.03 ? H2' ATP 201 A 1 HETATM 38 H HO2' ATP . . . C 2 14.936 2.152 13.139 1 45.35 ? HO2' ATP 201 A 1 HETATM 39 H H1' ATP . . . C 2 15.751 -0.14 14.77 1 43.4 ? H1' ATP 201 A 1 HETATM 40 H H8 ATP . . . C 2 12.599 1.828 15.766 1 39.9 ? H8 ATP 201 A 1 HETATM 41 H HN61 ATP . . . C 2 9.35 -1.05 13.645 1 38.2 ? HN61 ATP 201 A 1 HETATM 42 H HN62 ATP . . . C 2 9.477 -2.598 12.75 1 38.21 ? HN62 ATP 201 A 1 HETATM 43 H H2 ATP . . . C 2 13.833 -3.616 12.614 1 38.65 ? H2 ATP 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #