data_8R64 # _model_server_result.job_id rPEFzKz8YRzDJcmwm3rD3A _model_server_result.datetime_utc '2024-11-20 07:16:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":702}' # _entry.id 8R64 # _exptl.entry_id 8R64 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R64 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 181 B THR 448 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 H MG MG . B MG 701 1_555 I O1G ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 H MG MG . B MG 701 1_555 I O2B ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 B OG1 THR 181 C THR 448 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 J MG MG . C MG 701 1_555 K O2B ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc6 J MG MG . C MG 701 1_555 K O1G ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 C OG1 THR 181 D THR 448 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc8 L MG MG . D MG 701 1_555 M O2B ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc9 L MG MG . D MG 701 1_555 M O2G ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc10 D OG1 THR 181 E THR 448 1_555 N MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc11 N MG MG . E MG 701 1_555 O O1G ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc12 N MG MG . E MG 701 1_555 O O2B ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc13 N MG MG . E MG 701 1_555 E OD2 ASP 262 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc14 P MG MG . F MG 701 1_555 Q O1A ADP . F ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc15 F OG1 THR 181 A THR 448 1_555 R MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc16 R MG MG . A MG 701 1_555 S O3G ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc17 R MG MG . A MG 701 1_555 S O2B ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8R64 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 MG B 1 701 702 MG MG . I 4 ATP B 1 702 801 ATP ATP . J 3 MG C 1 701 702 MG MG . K 4 ATP C 1 702 801 ATP ATP . L 3 MG D 1 701 702 MG MG . M 4 ATP D 1 702 801 ATP ATP . N 3 MG E 1 701 702 MG MG . O 4 ATP E 1 702 801 ATP ATP . P 3 MG F 1 701 702 MG MG . Q 5 ADP F 1 702 801 ADP ADP . R 3 MG A 1 701 702 MG MG . S 4 ATP A 1 702 801 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 4 111.271 131.933 119.312 1 51.57 ? PG ATP 702 E 1 HETATM 2 O O1G ATP . . . O 4 110.309 130.854 119.674 1 61.77 ? O1G ATP 702 E 1 HETATM 3 O O2G ATP . . . O 4 112.733 131.48 119.31 1 47.82 ? O2G ATP 702 E 1 HETATM 4 O O3G ATP . . . O 4 110.957 132.608 117.976 1 48.29 ? O3G ATP 702 E 1 HETATM 5 P PB ATP . . . O 4 110.16 134.019 121.151 1 39.08 ? PB ATP 702 E 1 HETATM 6 O O1B ATP . . . O 4 109.659 135.12 120.304 1 47 ? O1B ATP 702 E 1 HETATM 7 O O2B ATP . . . O 4 109.097 133.077 121.712 1 46.36 ? O2B ATP 702 E 1 HETATM 8 O O3B ATP . . . O 4 111.221 133.119 120.384 1 37.68 ? O3B ATP 702 E 1 HETATM 9 P PA ATP . . . O 4 111.049 134.297 123.956 1 57.04 ? PA ATP 702 E 1 HETATM 10 O O1A ATP . . . O 4 111.33 132.881 124.269 1 51.06 ? O1A ATP 702 E 1 HETATM 11 O O2A ATP . . . O 4 109.734 134.83 124.524 1 55.49 ? O2A ATP 702 E 1 HETATM 12 O O3A ATP . . . O 4 111.013 134.545 122.388 1 53.69 ? O3A ATP 702 E 1 HETATM 13 O O5' ATP . . . O 4 112.224 135.224 124.46 1 51.78 ? O5' ATP 702 E 1 HETATM 14 C C5' ATP . . . O 4 112.719 135.13 125.812 1 53.13 ? C5' ATP 702 E 1 HETATM 15 C C4' ATP . . . O 4 113.788 136.164 126.038 1 46.47 ? C4' ATP 702 E 1 HETATM 16 O O4' ATP . . . O 4 113.428 137.32 125.248 1 44.26 ? O4' ATP 702 E 1 HETATM 17 C C3' ATP . . . O 4 113.754 136.656 127.483 1 54.74 ? C3' ATP 702 E 1 HETATM 18 O O3' ATP . . . O 4 115.022 137.249 127.729 1 62.64 ? O3' ATP 702 E 1 HETATM 19 C C2' ATP . . . O 4 112.766 137.816 127.408 1 52.54 ? C2' ATP 702 E 1 HETATM 20 O O2' ATP . . . O 4 113.188 138.749 128.391 1 53.27 ? O2' ATP 702 E 1 HETATM 21 C C1' ATP . . . O 4 113.206 138.432 126.088 1 46.81 ? C1' ATP 702 E 1 HETATM 22 N N9 ATP . . . O 4 112.143 139.217 125.475 1 39.8 ? N9 ATP 702 E 1 HETATM 23 C C8 ATP . . . O 4 111.625 139.066 124.216 1 50.53 ? C8 ATP 702 E 1 HETATM 24 N N7 ATP . . . O 4 110.676 139.922 123.922 1 47.22 ? N7 ATP 702 E 1 HETATM 25 C C5 ATP . . . O 4 110.563 140.694 125.068 1 41.57 ? C5 ATP 702 E 1 HETATM 26 C C6 ATP . . . O 4 109.733 141.78 125.405 1 40.9 ? C6 ATP 702 E 1 HETATM 27 N N6 ATP . . . O 4 108.816 142.298 124.581 1 39.81 ? N6 ATP 702 E 1 HETATM 28 N N1 ATP . . . O 4 109.875 142.323 126.633 1 46.56 ? N1 ATP 702 E 1 HETATM 29 C C2 ATP . . . O 4 110.788 141.809 127.462 1 49.19 ? C2 ATP 702 E 1 HETATM 30 N N3 ATP . . . O 4 111.625 140.79 127.256 1 49.3 ? N3 ATP 702 E 1 HETATM 31 C C4 ATP . . . O 4 111.463 140.272 126.034 1 41.06 ? C4 ATP 702 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 149 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #